Wall clock time and date at job start Sun Mar 29 2020 22:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34239 * 116.99525 * 2 1 4 4 O 1.20825 * 120.00074 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99542 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46887 * 174.47359 * 5 3 2 7 7 N 1.46503 * 112.84671 * 301.29843 * 6 5 3 8 8 C 1.36936 * 120.00128 * 294.74286 * 7 6 5 9 9 H 1.07997 * 120.00310 * 354.36143 * 8 7 6 10 10 C 1.38811 * 119.99809 * 174.35731 * 8 7 6 11 11 N 1.31622 * 119.99864 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00337 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47252 * 89.99756 * 12 10 8 14 14 H 1.48500 * 109.47599 * 210.00343 * 12 10 8 15 15 H 1.48500 * 109.47104 * 330.00215 * 12 10 8 16 16 C 1.53773 * 113.61499 * 170.10101 * 6 5 3 17 17 C 1.53951 * 87.02132 * 220.04895 * 16 6 5 18 18 C 1.53776 * 87.11265 * 25.36310 * 17 16 6 19 19 H 1.09000 * 109.47425 * 60.00489 * 1 2 3 20 20 H 1.09005 * 109.46724 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47720 * 300.00013 * 1 2 3 22 22 H 1.08999 * 109.47566 * 294.47412 * 5 3 2 23 23 H 1.08999 * 109.47417 * 54.48050 * 5 3 2 24 24 H 0.97003 * 119.99636 * 114.74769 * 7 6 5 25 25 H 0.97004 * 119.99928 * 179.97438 * 11 10 8 26 26 H 1.08997 * 113.61909 * 334.56873 * 16 6 5 27 27 H 1.09010 * 113.61329 * 105.47147 * 16 6 5 28 28 H 1.09005 * 113.53901 * 270.81296 * 17 16 6 29 29 H 1.09000 * 113.67114 * 139.93468 * 17 16 6 30 30 H 1.08995 * 113.61974 * 220.09551 * 18 17 16 31 31 H 1.08999 * 113.61725 * 89.18559 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.0004 2.7356 -0.1385 7 7 3.4955 3.3651 -1.3612 8 6 3.9202 2.9217 -2.5852 9 1 4.6941 2.1711 -2.6490 10 6 3.3558 3.4369 -3.7441 11 7 3.7636 3.0103 -4.9206 12 14 2.0177 4.7355 -3.6339 13 1 2.6368 6.0853 -3.6318 14 1 1.1084 4.6098 -4.8013 15 1 1.2439 4.5440 -2.3810 16 6 5.5048 2.9556 0.0918 17 6 5.1192 4.2385 0.8505 18 6 3.7614 3.5726 1.1293 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 3.9510 0.8691 0.9361 23 1 3.9607 0.6976 -0.8356 24 1 2.8605 4.0961 -1.3037 25 1 3.3690 3.3700 -5.7304 26 1 5.9655 2.1964 0.7238 27 1 6.0643 3.1409 -0.8252 28 1 5.0508 5.1186 0.2109 29 1 5.7132 4.4114 1.7479 30 1 2.9155 4.2552 1.0487 31 1 3.7445 2.9823 2.0454 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308477419.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:01 Heat of formation + Delta-G solvation = -51.391998 kcal Electronic energy + Delta-G solvation = -14937.724376 eV Core-core repulsion = 12413.631170 eV Total energy + Delta-G solvation = -2524.093207 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.05141 -38.49576 -35.76734 -33.21550 -30.81117 -29.80579 -27.10953 -25.19087 -23.90036 -22.21017 -20.31476 -18.11206 -17.59736 -16.94320 -16.06983 -15.94195 -14.87787 -14.36976 -14.15893 -13.34674 -13.08404 -13.01192 -12.58716 -11.93382 -11.76703 -11.58786 -11.31692 -11.05997 -10.79837 -10.36943 -10.34454 -10.16650 -10.06874 -9.78994 -9.60029 -9.36873 -8.83237 -7.23599 -5.75764 -3.10684 2.89455 3.25594 3.42151 3.49715 3.54731 4.64344 5.12634 5.14885 5.21926 5.34785 5.35908 5.41609 5.47480 5.57040 5.72975 5.79912 5.96914 6.13615 6.17213 6.22897 6.32556 6.46593 6.76149 6.84700 6.91803 7.06149 8.02866 8.39918 8.45092 9.24583 9.97803 10.18846 11.42021 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.021513 B = 0.014597 C = 0.010650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.231285 B = 1917.693325 C = 2628.559701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.371 6.371 3 C 0.470 3.530 4 O -0.495 6.495 5 C -0.115 4.115 6 C 0.204 3.796 7 N -0.719 5.719 8 C -0.243 4.243 9 H 0.091 0.909 10 C 0.009 3.991 11 N -0.933 5.933 12 Si 0.874 3.126 13 H -0.285 1.285 14 H -0.293 1.293 15 H -0.268 1.268 16 C -0.149 4.149 17 C -0.132 4.132 18 C -0.140 4.140 19 H 0.060 0.940 20 H 0.093 0.907 21 H 0.055 0.945 22 H 0.092 0.908 23 H 0.105 0.895 24 H 0.368 0.632 25 H 0.259 0.741 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.763 -3.572 12.738 13.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.289 6.289 3 C 0.312 3.688 4 O -0.380 6.380 5 C -0.155 4.155 6 C 0.111 3.889 7 N -0.361 5.361 8 C -0.372 4.372 9 H 0.109 0.891 10 C -0.187 4.187 11 N -0.580 5.580 12 Si 0.704 3.296 13 H -0.211 1.211 14 H -0.219 1.219 15 H -0.194 1.194 16 C -0.189 4.189 17 C -0.170 4.170 18 C -0.178 4.178 19 H 0.079 0.921 20 H 0.111 0.889 21 H 0.074 0.926 22 H 0.110 0.890 23 H 0.123 0.877 24 H 0.202 0.798 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.913 -3.372 12.519 13.105 hybrid contribution -1.246 0.891 -0.221 1.547 sum -3.159 -2.481 12.298 12.937 Atomic orbital electron populations 1.23104 0.77650 1.02756 1.02160 1.86516 1.22545 1.34813 1.84981 1.23825 0.92220 0.80805 0.71911 1.90607 1.67019 1.36176 1.44233 1.22013 0.87033 1.02510 1.03950 1.20260 0.92899 0.88296 0.87484 1.42387 1.52691 1.40272 1.00726 1.18981 1.16611 1.19925 0.81701 0.89090 1.24629 0.99190 0.99744 0.95134 1.69703 1.45599 1.46027 0.96674 0.86663 0.83108 0.82416 0.77422 1.21124 1.21915 1.19382 1.23370 0.97955 0.96964 1.00603 1.22705 0.96777 0.98081 0.99407 1.23144 0.97839 0.99528 0.97283 0.92123 0.88873 0.92575 0.89010 0.87661 0.79783 0.93121 0.91105 0.90289 0.90239 0.92557 0.91461 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.40 10.57 -39.28 -0.42 -6.81 16 3 C 0.47 9.07 7.71 36.01 0.28 9.35 16 4 O -0.49 -10.84 14.63 -18.75 -0.27 -11.11 16 5 C -0.11 -2.02 5.14 -27.88 -0.14 -2.16 16 6 C 0.20 3.91 0.50 -131.00 -0.07 3.84 16 7 N -0.72 -17.26 4.03 -46.48 -0.19 -17.45 16 8 C -0.24 -6.74 9.67 -15.06 -0.15 -6.89 16 9 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 10 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 11 N -0.93 -29.38 13.97 55.49 0.78 -28.60 16 12 Si 0.87 22.92 27.68 -169.99 -4.71 18.21 16 13 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 15 H -0.27 -6.98 6.60 56.52 0.37 -6.61 16 16 C -0.15 -2.53 7.30 -25.83 -0.19 -2.72 16 17 C -0.13 -2.08 8.00 -25.83 -0.21 -2.29 16 18 C -0.14 -2.32 6.61 -25.92 -0.17 -2.49 16 19 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 20 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 21 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 22 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.11 1.96 8.02 -51.93 -0.42 1.54 16 24 H 0.37 9.18 5.79 -40.82 -0.24 8.94 16 25 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 26 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 27 H 0.08 1.52 7.86 -51.92 -0.41 1.11 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 31 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 263.85 15.07 3.98 3.98 Total: -1.00 -32.61 263.85 -4.95 -37.56 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.44 Total: 5.83 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 0.33 Total: -1.60 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.59 Total: -46.05 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.69 Total: -17.92 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.71 Total: 18.21 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.61 -4.95 -37.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308477419.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.830 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds