Wall clock time and date at job start Sun Mar 29 2020 22:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34239 * 116.99525 * 2 1 4 4 O 1.20825 * 120.00074 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99542 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46887 * 174.47359 * 5 3 2 7 7 N 1.46503 * 112.84671 * 301.29843 * 6 5 3 8 8 C 1.36936 * 120.00128 * 294.74286 * 7 6 5 9 9 H 1.07997 * 120.00310 * 354.36143 * 8 7 6 10 10 C 1.38811 * 119.99809 * 174.35731 * 8 7 6 11 11 N 1.31622 * 119.99864 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00337 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47252 * 89.99756 * 12 10 8 14 14 H 1.48500 * 109.47599 * 210.00343 * 12 10 8 15 15 H 1.48500 * 109.47104 * 330.00215 * 12 10 8 16 16 C 1.53773 * 113.61499 * 170.10101 * 6 5 3 17 17 C 1.53951 * 87.02132 * 220.04895 * 16 6 5 18 18 C 1.53776 * 87.11265 * 25.36310 * 17 16 6 19 19 H 1.09000 * 109.47425 * 60.00489 * 1 2 3 20 20 H 1.09005 * 109.46724 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47720 * 300.00013 * 1 2 3 22 22 H 1.08999 * 109.47566 * 294.47412 * 5 3 2 23 23 H 1.08999 * 109.47417 * 54.48050 * 5 3 2 24 24 H 0.97003 * 119.99636 * 114.74769 * 7 6 5 25 25 H 0.97004 * 119.99928 * 179.97438 * 11 10 8 26 26 H 1.08997 * 113.61909 * 334.56873 * 16 6 5 27 27 H 1.09010 * 113.61329 * 105.47147 * 16 6 5 28 28 H 1.09005 * 113.53901 * 270.81296 * 17 16 6 29 29 H 1.09000 * 113.67114 * 139.93468 * 17 16 6 30 30 H 1.08995 * 113.61974 * 220.09551 * 18 17 16 31 31 H 1.08999 * 113.61725 * 89.18559 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.0004 2.7356 -0.1385 7 7 3.4955 3.3651 -1.3612 8 6 3.9202 2.9217 -2.5852 9 1 4.6941 2.1711 -2.6490 10 6 3.3558 3.4369 -3.7441 11 7 3.7636 3.0103 -4.9206 12 14 2.0177 4.7355 -3.6339 13 1 2.6368 6.0853 -3.6318 14 1 1.1084 4.6098 -4.8013 15 1 1.2439 4.5440 -2.3810 16 6 5.5048 2.9556 0.0918 17 6 5.1192 4.2385 0.8505 18 6 3.7614 3.5726 1.1293 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 3.9510 0.8691 0.9361 23 1 3.9607 0.6976 -0.8356 24 1 2.8605 4.0961 -1.3037 25 1 3.3690 3.3700 -5.7304 26 1 5.9655 2.1964 0.7238 27 1 6.0643 3.1409 -0.8252 28 1 5.0508 5.1186 0.2109 29 1 5.7132 4.4114 1.7479 30 1 2.9155 4.2552 1.0487 31 1 3.7445 2.9823 2.0454 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308477419.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:01 Heat of formation + Delta-G solvation = -73.224409 kcal Electronic energy + Delta-G solvation = -14938.671100 eV Core-core repulsion = 12413.631170 eV Total energy + Delta-G solvation = -2525.039931 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.50509 -39.92750 -37.21724 -35.24421 -32.67894 -31.42396 -28.32242 -26.58350 -25.73636 -23.80353 -21.69638 -19.84480 -19.52436 -18.40273 -17.49572 -17.33895 -16.44000 -16.18755 -15.74498 -14.87910 -14.70058 -14.52675 -14.33468 -13.44682 -13.13978 -13.04980 -12.97181 -12.83884 -12.39297 -12.22525 -11.82722 -11.71910 -11.59866 -11.54331 -11.33170 -10.86037 -10.79693 -9.26566 -8.02449 -5.32312 1.31974 1.35409 1.41645 1.44724 1.95813 2.46872 3.27747 3.52430 3.79793 3.91092 4.00512 4.12368 4.31424 4.33895 4.40674 4.59764 4.70248 4.73872 4.86310 4.93304 5.02128 5.17578 5.37686 5.41240 5.53353 5.71781 5.84456 6.24241 6.95397 7.10220 7.90025 8.07142 9.18890 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.021513 B = 0.014597 C = 0.010650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.231285 B = 1917.693325 C = 2628.559701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.465 3.535 4 O -0.527 6.527 5 C -0.113 4.113 6 C 0.175 3.825 7 N -0.727 5.727 8 C -0.209 4.209 9 H 0.070 0.930 10 C -0.059 4.059 11 N -0.981 5.981 12 Si 0.936 3.064 13 H -0.278 1.278 14 H -0.299 1.299 15 H -0.267 1.267 16 C -0.142 4.142 17 C -0.125 4.125 18 C -0.128 4.128 19 H 0.042 0.958 20 H 0.132 0.868 21 H 0.066 0.934 22 H 0.140 0.860 23 H 0.091 0.909 24 H 0.362 0.638 25 H 0.255 0.745 26 H 0.109 0.891 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 -3.991 15.409 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.291 6.291 3 C 0.309 3.691 4 O -0.416 6.416 5 C -0.152 4.152 6 C 0.084 3.916 7 N -0.368 5.368 8 C -0.340 4.340 9 H 0.087 0.913 10 C -0.251 4.251 11 N -0.632 5.632 12 Si 0.765 3.235 13 H -0.204 1.204 14 H -0.226 1.226 15 H -0.192 1.192 16 C -0.181 4.181 17 C -0.162 4.162 18 C -0.165 4.165 19 H 0.061 0.939 20 H 0.150 0.850 21 H 0.084 0.916 22 H 0.158 0.842 23 H 0.109 0.891 24 H 0.195 0.805 25 H 0.064 0.936 26 H 0.128 0.872 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.922 -3.810 15.257 15.843 hybrid contribution -1.218 0.912 -0.941 1.790 sum -3.141 -2.898 14.316 14.940 Atomic orbital electron populations 1.23419 0.75765 1.05289 1.01808 1.86500 1.24426 1.33720 1.84415 1.24187 0.92927 0.80867 0.71077 1.90594 1.67819 1.37238 1.45911 1.22027 0.86225 1.01124 1.05833 1.20788 0.94574 0.89433 0.86793 1.42449 1.52613 1.40537 1.01201 1.18970 1.14354 1.17469 0.83214 0.91253 1.25271 1.02070 1.02613 0.95106 1.69844 1.47735 1.48350 0.97273 0.85669 0.80578 0.80438 0.76812 1.20402 1.22647 1.19205 1.23368 0.95766 0.98803 1.00152 1.22655 0.96759 0.96616 1.00189 1.23142 0.97477 0.98939 0.96989 0.93890 0.84966 0.91551 0.84194 0.89118 0.80488 0.93620 0.87229 0.93473 0.92395 0.88984 0.93185 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.98 16 2 O -0.37 -12.13 10.57 -51.51 -0.54 -12.68 16 3 C 0.47 17.16 7.71 71.24 0.55 17.71 16 4 O -0.53 -22.50 14.63 21.97 0.32 -22.18 16 5 C -0.11 -3.68 5.14 29.85 0.15 -3.53 16 6 C 0.17 6.36 0.50 4.13 0.00 6.37 16 7 N -0.73 -34.63 4.03 -300.96 -1.21 -35.84 16 8 C -0.21 -11.79 9.67 84.03 0.81 -10.97 16 9 H 0.07 4.16 8.06 -2.91 -0.02 4.14 16 10 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 11 N -0.98 -63.58 13.97 21.65 0.30 -63.27 16 12 Si 0.94 48.55 27.68 68.60 1.90 50.45 16 13 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 14 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 15 H -0.27 -13.58 6.60 99.48 0.66 -12.92 16 16 C -0.14 -4.43 7.30 31.18 0.23 -4.20 16 17 C -0.12 -3.54 8.00 31.18 0.25 -3.29 16 18 C -0.13 -3.82 6.61 31.12 0.21 -3.61 16 19 H 0.04 1.25 8.13 -2.39 -0.02 1.23 16 20 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 21 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 22 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 23 H 0.09 3.26 8.02 -2.39 -0.02 3.24 16 24 H 0.36 17.93 5.79 -92.71 -0.54 17.40 16 25 H 0.25 15.91 8.31 -92.71 -0.77 15.14 16 26 H 0.11 2.58 8.10 -2.39 -0.02 2.56 16 27 H 0.05 1.77 7.86 -2.38 -0.02 1.75 16 28 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.68 8.09 -2.39 -0.02 1.66 16 31 H 0.11 2.54 8.10 -2.39 -0.02 2.52 16 Total: -1.00 -71.99 263.85 5.16 -66.83 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.53 Total: 19.34 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 3.86 Total: -2.65 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -0.91 Total: -99.11 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.22 Total: -34.86 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 1.90 Total: 50.45 kcal Total: -71.99 5.16 -66.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308477419.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.395 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds