Wall clock time and date at job start Sun Mar 29 2020 22:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99681 * 2 1 4 4 C 1.53004 * 109.46867 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46862 * 179.97438 * 4 3 2 6 6 O 1.21290 * 120.00084 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99984 * 179.97438 * 5 4 3 8 8 C 1.37097 * 120.00373 * 180.02562 * 7 5 4 9 9 H 1.07997 * 119.99852 * 224.29560 * 8 7 5 10 10 C 1.38949 * 119.99918 * 44.28910 * 8 7 5 11 11 N 1.31413 * 119.99917 * 18.21196 * 10 8 7 12 12 Si 1.86800 * 120.00189 * 198.21142 * 10 8 7 13 13 H 1.48500 * 109.46908 * 90.00326 * 12 10 8 14 14 H 1.48498 * 109.47192 * 210.00185 * 12 10 8 15 15 H 1.48497 * 109.46872 * 330.00379 * 12 10 8 16 16 C 1.46504 * 119.99876 * 0.02562 * 7 5 4 17 17 C 1.52995 * 117.49718 * 183.22163 * 16 7 5 18 18 C 1.52994 * 117.50128 * 114.59933 * 16 7 5 19 19 H 1.08998 * 109.46758 * 60.00657 * 1 2 3 20 20 H 1.09003 * 109.47018 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47075 * 299.99976 * 1 2 3 22 22 H 1.09000 * 109.47625 * 59.99878 * 3 2 1 23 23 H 1.08995 * 109.47017 * 299.99443 * 3 2 1 24 24 H 1.08995 * 109.47008 * 299.99645 * 4 3 2 25 25 H 1.09002 * 109.46895 * 60.00202 * 4 3 2 26 26 H 0.97001 * 120.00005 * 174.93555 * 11 10 8 27 27 H 1.09006 * 115.54901 * 328.91915 * 16 7 5 28 28 H 1.08999 * 117.50473 * 359.97438 * 17 16 7 29 29 H 1.09002 * 117.50133 * 145.01673 * 17 16 7 30 30 H 1.09004 * 117.49750 * 214.97913 * 18 16 7 31 31 H 1.08996 * 117.49782 * 359.96796 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1483 2.5614 0.0000 6 8 3.4353 3.5427 -0.0004 7 7 5.4887 2.7024 0.0009 8 6 6.0463 3.9548 0.0009 9 1 6.8780 4.1756 -0.6517 10 6 5.5414 4.9402 0.8404 11 7 4.7948 4.6074 1.8694 12 14 5.9238 6.7378 0.5065 13 1 4.8801 7.3091 -0.3820 14 1 5.9456 7.4858 1.7892 15 1 7.2497 6.8475 -0.1531 16 6 6.3499 1.5172 0.0020 17 6 7.8612 1.7422 0.0793 18 6 7.2231 1.2772 -1.2312 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.6885 1.8465 0.8899 23 1 1.6886 1.8463 -0.8900 24 1 3.8567 0.6440 0.8909 25 1 3.8574 0.6436 -0.8891 26 1 4.5032 5.2870 2.4971 27 1 5.9444 0.6419 0.5097 28 1 8.2149 2.7720 0.1289 29 1 8.4504 1.0150 0.6380 30 1 7.3924 0.2441 -1.5347 31 1 7.1564 2.0009 -2.0435 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308488907.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:17 Heat of formation + Delta-G solvation = -68.029592 kcal Electronic energy + Delta-G solvation = -14585.578281 eV Core-core repulsion = 12060.763614 eV Total energy + Delta-G solvation = -2524.814667 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.50039 -38.78165 -37.71597 -34.85530 -33.10423 -32.15942 -27.88140 -26.79329 -24.35704 -23.07511 -22.72978 -20.91317 -18.51316 -17.85916 -17.23078 -16.98401 -16.56955 -16.11013 -15.65740 -15.46540 -15.07424 -14.40591 -13.94881 -13.70121 -12.96099 -12.87943 -12.78968 -12.62134 -12.27893 -12.16603 -12.09009 -12.00495 -11.64983 -11.20613 -10.74118 -10.65648 -10.00136 -8.98625 -8.20887 -5.99654 1.35685 1.44124 1.49086 2.21039 2.38537 2.63322 3.12328 3.29815 3.38694 4.02985 4.10417 4.14485 4.21657 4.31955 4.48119 4.52798 4.55842 4.67257 4.81531 4.85637 4.91672 4.95287 5.08799 5.31118 5.47145 5.50973 6.16986 6.20042 7.02358 7.17671 7.68245 8.33033 8.88065 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026734 B = 0.010713 C = 0.008101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.093868 B = 2613.124162 C = 3455.342190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.093 3.907 4 C -0.116 4.116 5 C 0.469 3.531 6 O -0.590 6.590 7 N -0.443 5.443 8 C -0.357 4.357 9 H 0.079 0.921 10 C 0.020 3.980 11 N -0.873 5.873 12 Si 0.972 3.028 13 H -0.291 1.291 14 H -0.280 1.280 15 H -0.253 1.253 16 C 0.041 3.959 17 C -0.171 4.171 18 C -0.179 4.179 19 H 0.047 0.953 20 H 0.111 0.889 21 H 0.042 0.958 22 H 0.035 0.965 23 H 0.046 0.954 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.260 0.740 27 H 0.126 0.874 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.449 -9.240 -3.447 9.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.016 3.984 4 C -0.156 4.156 5 C 0.259 3.741 6 O -0.472 6.472 7 N -0.163 5.163 8 C -0.485 4.485 9 H 0.097 0.903 10 C -0.186 4.186 11 N -0.508 5.508 12 Si 0.797 3.203 13 H -0.218 1.218 14 H -0.206 1.206 15 H -0.177 1.177 16 C -0.064 4.064 17 C -0.208 4.208 18 C -0.217 4.217 19 H 0.065 0.935 20 H 0.129 0.871 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.111 0.889 25 H 0.124 0.876 26 H 0.069 0.931 27 H 0.143 0.857 28 H 0.099 0.901 29 H 0.136 0.864 30 H 0.144 0.856 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.836 -8.830 -3.315 9.469 hybrid contribution -0.187 1.416 0.199 1.442 sum -1.023 -7.414 -3.117 8.108 Atomic orbital electron populations 1.22963 0.79377 1.04196 1.00563 1.87750 1.21675 1.27714 1.95579 1.21913 0.92846 0.83670 0.99989 1.21302 0.94334 0.95151 1.04860 1.20501 0.82964 0.90461 0.80221 1.90478 1.61028 1.42584 1.53098 1.42989 1.03405 1.04395 1.65510 1.19129 1.18979 0.87504 1.22841 0.90314 1.26096 0.95268 1.03678 0.93586 1.69941 1.34255 1.35030 1.11594 0.85290 0.78618 0.78887 0.77534 1.21783 1.20595 1.17668 1.22052 0.90150 0.91015 1.03155 1.23121 0.94239 1.02601 1.00848 1.23326 1.04137 1.02757 0.91523 0.93461 0.87081 0.93969 0.94705 0.93619 0.88949 0.87603 0.93130 0.85651 0.90061 0.86407 0.85643 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 11.01 113.37 1.25 1.85 16 2 O -0.41 -13.41 10.70 -148.98 -1.59 -15.00 16 3 C 0.09 3.57 5.23 71.98 0.38 3.95 16 4 C -0.12 -4.62 4.69 29.85 0.14 -4.48 16 5 C 0.47 24.46 6.97 87.66 0.61 25.07 16 6 O -0.59 -36.06 13.74 -3.06 -0.04 -36.10 16 7 N -0.44 -22.50 2.83 -613.14 -1.74 -24.24 16 8 C -0.36 -19.89 7.92 84.04 0.67 -19.23 16 9 H 0.08 4.23 7.26 -2.91 -0.02 4.21 16 10 C 0.02 1.14 4.39 84.93 0.37 1.51 16 11 N -0.87 -53.69 11.74 21.66 0.25 -53.43 16 12 Si 0.97 46.12 29.59 68.60 2.03 48.15 16 13 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 15 H -0.25 -10.99 7.11 99.48 0.71 -10.28 16 16 C 0.04 1.59 5.87 44.99 0.26 1.86 16 17 C -0.17 -5.83 9.80 30.59 0.30 -5.53 16 18 C -0.18 -5.63 10.36 30.59 0.32 -5.32 16 19 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 20 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.03 1.47 8.10 -2.39 -0.02 1.45 16 23 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 24 H 0.09 3.45 7.56 -2.39 -0.02 3.43 16 25 H 0.11 3.65 8.11 -2.39 -0.02 3.63 16 26 H 0.26 15.36 8.32 -92.71 -0.77 14.59 16 27 H 0.13 4.25 6.96 -2.38 -0.02 4.24 16 28 H 0.08 3.21 6.72 -2.39 -0.02 3.19 16 29 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.13 2.97 8.14 -2.38 -0.02 2.95 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -72.06 266.14 4.31 -67.75 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 1.10 Total: 13.19 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 4.29 Total: -0.32 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -1.48 Total: -77.67 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: -1.64 Total: -51.10 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -72.06 4.31 -67.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308488907.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.275 kcal (2) G-P(sol) polarization free energy of solvation -72.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds