Wall clock time and date at job start Sun Mar 29 2020 22:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47055 * 2 1 4 4 C 1.53000 * 109.46979 * 184.20317 * 3 2 1 5 5 C 1.52998 * 110.88737 * 64.97969 * 4 3 2 6 6 O 1.42897 * 109.47280 * 55.20635 * 5 4 3 7 7 C 1.55155 * 111.00580 * 301.09809 * 4 3 2 8 8 C 1.54323 * 102.94199 * 206.38554 * 7 4 3 9 9 N 1.47028 * 107.27192 * 22.19225 * 8 7 4 10 10 C 1.36933 * 125.64690 * 181.02433 * 9 8 7 11 11 H 1.08005 * 119.99849 * 185.40828 * 10 9 8 12 12 C 1.38816 * 120.00562 * 5.39899 * 10 9 8 13 13 N 1.31617 * 119.99380 * 353.31661 * 12 10 9 14 14 Si 1.86798 * 120.00138 * 173.31356 * 12 10 9 15 15 H 1.48498 * 109.47158 * 275.01767 * 14 12 10 16 16 H 1.48500 * 109.47073 * 35.01897 * 14 12 10 17 17 H 1.48501 * 109.46852 * 155.02010 * 14 12 10 18 18 C 1.47422 * 108.70038 * 1.28811 * 9 8 7 19 19 H 1.08998 * 109.47012 * 59.99961 * 1 2 3 20 20 H 1.09003 * 109.47057 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47097 * 299.99971 * 1 2 3 22 22 H 1.09001 * 109.46942 * 240.00129 * 2 1 3 23 23 H 1.08992 * 109.47143 * 120.00463 * 2 1 3 24 24 H 1.09003 * 109.46689 * 64.20716 * 3 2 1 25 25 H 1.08997 * 109.47587 * 304.20359 * 3 2 1 26 26 H 1.09001 * 109.47676 * 175.20953 * 5 4 3 27 27 H 1.09008 * 109.46741 * 295.20871 * 5 4 3 28 28 H 0.96695 * 114.00050 * 180.02562 * 6 5 4 29 29 H 1.08996 * 110.72442 * 88.02538 * 7 4 3 30 30 H 1.09008 * 110.87181 * 324.81705 * 7 4 3 31 31 H 1.09000 * 109.88620 * 262.77551 * 8 7 4 32 32 H 1.09008 * 110.01271 * 141.68163 * 8 7 4 33 33 H 0.97002 * 120.00075 * 179.97438 * 13 12 10 34 34 H 1.09002 * 110.36636 * 94.48089 * 18 9 8 35 35 H 1.08999 * 110.36430 * 216.80780 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5664 1.4437 -0.1057 5 6 4.0205 0.8715 -1.4500 6 8 3.3967 1.5965 -2.5116 7 6 4.2063 0.6660 1.0745 8 6 5.5996 1.3170 1.2024 9 7 5.5161 2.6509 0.5897 10 6 6.5476 3.5449 0.4803 11 1 6.3646 4.5356 0.0911 12 6 7.8285 3.1779 0.8697 13 7 8.0292 2.0213 1.4650 14 14 9.2671 4.3255 0.5489 15 1 9.7767 4.1072 -0.8287 16 1 8.8186 5.7337 0.6935 17 1 10.3495 4.0477 1.5269 18 6 4.1364 2.8690 0.1183 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.7395 1.9340 0.9253 25 1 1.6165 1.9776 -0.8499 26 1 5.1034 0.9612 -1.5360 27 1 3.7370 -0.1793 -1.5119 28 1 3.6391 1.2869 -3.3950 29 1 4.2963 -0.3934 0.8346 30 1 3.6301 0.8053 1.9893 31 1 6.3403 0.7137 0.6776 32 1 5.8736 1.4084 2.2536 33 1 8.9243 1.7646 1.7369 34 1 3.5562 3.3976 0.8747 35 1 4.1392 3.4274 -0.8178 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308491436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:11 Heat of formation + Delta-G solvation = -43.879304 kcal Electronic energy + Delta-G solvation = -15144.985918 eV Core-core repulsion = 12757.051581 eV Total energy + Delta-G solvation = -2387.934337 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.76950 -35.64855 -34.47155 -32.23056 -29.76529 -28.37521 -25.72844 -25.44779 -23.35427 -21.40789 -19.85341 -18.23451 -16.97494 -16.46695 -15.16926 -15.01052 -14.49265 -14.00121 -13.57889 -13.05404 -12.65886 -12.52078 -12.36119 -11.88204 -11.73545 -11.30672 -11.08353 -10.97877 -10.77745 -10.58752 -10.32539 -10.05933 -9.90841 -9.69937 -9.64303 -9.58154 -9.24855 -8.50984 -6.73738 -5.66073 -2.97186 3.43798 3.48701 3.50384 4.55202 4.65347 5.14700 5.20930 5.24715 5.47008 5.51222 5.59339 5.76289 5.80600 5.93143 6.00513 6.01349 6.14482 6.21696 6.26662 6.28943 6.41889 6.58640 6.60166 6.70681 6.79102 6.98377 7.02946 7.62669 7.69452 7.88190 8.03733 8.33321 9.29334 9.90164 10.58076 11.46218 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052559 B = 0.008026 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.605576 B = 3487.839991 C = 3685.383819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.097 4.097 4 C -0.070 4.070 5 C 0.098 3.902 6 O -0.571 6.571 7 C -0.133 4.133 8 C 0.175 3.825 9 N -0.606 5.606 10 C -0.223 4.223 11 H 0.076 0.924 12 C -0.010 4.010 13 N -0.923 5.923 14 Si 0.909 3.091 15 H -0.289 1.289 16 H -0.282 1.282 17 H -0.292 1.292 18 C 0.148 3.852 19 H 0.051 0.949 20 H 0.047 0.953 21 H 0.051 0.949 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.369 0.631 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.251 0.749 34 H 0.016 0.984 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.851 -4.878 -4.216 12.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.135 4.135 4 C -0.071 4.071 5 C 0.020 3.980 6 O -0.375 6.375 7 C -0.171 4.171 8 C 0.051 3.949 9 N -0.332 5.332 10 C -0.352 4.352 11 H 0.094 0.906 12 C -0.206 4.206 13 N -0.571 5.571 14 Si 0.740 3.260 15 H -0.216 1.216 16 H -0.208 1.208 17 H -0.218 1.218 18 C 0.021 3.979 19 H 0.070 0.930 20 H 0.066 0.934 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.215 0.785 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.873 -4.535 -3.639 12.330 hybrid contribution 1.149 0.206 -0.529 1.281 sum -9.724 -4.329 -4.168 11.431 Atomic orbital electron populations 1.21768 0.96556 1.00873 1.01522 1.21546 0.95025 0.97717 1.01726 1.21432 0.94379 0.96119 1.01580 1.21726 0.94193 0.98101 0.93095 1.22044 0.96761 0.92739 0.86430 1.86448 1.72255 1.61989 1.16811 1.22924 0.99350 0.98412 0.96433 1.21157 0.90354 0.85680 0.97745 1.44498 1.04961 1.15375 1.68374 1.19062 0.86208 0.93701 1.36227 0.90568 1.24802 0.97333 0.97355 1.01100 1.69979 1.20489 1.21742 1.44879 0.86170 0.82470 0.79867 0.77509 1.21644 1.20792 1.21784 1.21595 0.86601 0.92955 0.96701 0.92978 0.93359 0.93025 0.92305 0.92160 0.92472 0.91509 0.92612 0.94699 0.78528 0.92404 0.92062 0.93614 0.94386 0.93870 0.96647 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.61 5.48 -26.73 -0.15 -1.76 16 3 C -0.10 -1.51 4.23 -26.73 -0.11 -1.62 16 4 C -0.07 -1.29 0.45 -152.24 -0.07 -1.35 16 5 C 0.10 1.69 5.58 37.16 0.21 1.90 16 6 O -0.57 -9.16 12.47 -35.23 -0.44 -9.60 16 7 C -0.13 -2.55 4.80 -24.90 -0.12 -2.67 16 8 C 0.18 4.36 5.08 -3.06 -0.02 4.35 16 9 N -0.61 -16.03 3.37 -169.92 -0.57 -16.61 16 10 C -0.22 -6.44 10.27 -15.06 -0.15 -6.59 16 11 H 0.08 2.14 7.84 -52.48 -0.41 1.73 16 12 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16 13 N -0.92 -27.64 10.35 55.49 0.57 -27.07 16 14 Si 0.91 22.58 29.56 -169.99 -5.02 17.55 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 C 0.15 3.29 6.15 -2.41 -0.01 3.28 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.77 6.60 -51.93 -0.34 0.43 16 23 H 0.06 0.79 7.42 -51.93 -0.39 0.41 16 24 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 25 H 0.07 1.06 7.51 -51.93 -0.39 0.67 16 26 H 0.06 1.12 7.91 -51.93 -0.41 0.71 16 27 H 0.03 0.53 6.84 -51.92 -0.36 0.18 16 28 H 0.37 4.19 9.12 45.56 0.42 4.61 16 29 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 30 H 0.06 1.12 8.04 -51.92 -0.42 0.70 16 31 H 0.05 1.24 7.27 -51.93 -0.38 0.87 16 32 H 0.04 1.05 7.62 -51.92 -0.40 0.65 16 33 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.02 0.35 7.97 -51.93 -0.41 -0.06 16 35 H 0.04 1.02 7.78 -51.93 -0.40 0.62 16 LS Contribution 275.25 15.07 4.15 4.15 Total: -1.00 -31.37 275.25 -6.59 -37.96 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.13 Total: -0.22 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -0.15 Total: -6.16 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.00 Total: -43.68 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.44 Total: -9.60 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.37 -6.59 -37.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308491436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.918 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds