Wall clock time and date at job start Sun Mar 29 2020 22:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47055 * 2 1 4 4 C 1.53000 * 109.46979 * 184.20317 * 3 2 1 5 5 C 1.52998 * 110.88737 * 64.97969 * 4 3 2 6 6 O 1.42897 * 109.47280 * 55.20635 * 5 4 3 7 7 C 1.55155 * 111.00580 * 301.09809 * 4 3 2 8 8 C 1.54323 * 102.94199 * 206.38554 * 7 4 3 9 9 N 1.47028 * 107.27192 * 22.19225 * 8 7 4 10 10 C 1.36933 * 125.64690 * 181.02433 * 9 8 7 11 11 H 1.08005 * 119.99849 * 185.40828 * 10 9 8 12 12 C 1.38816 * 120.00562 * 5.39899 * 10 9 8 13 13 N 1.31617 * 119.99380 * 353.31661 * 12 10 9 14 14 Si 1.86798 * 120.00138 * 173.31356 * 12 10 9 15 15 H 1.48498 * 109.47158 * 275.01767 * 14 12 10 16 16 H 1.48500 * 109.47073 * 35.01897 * 14 12 10 17 17 H 1.48501 * 109.46852 * 155.02010 * 14 12 10 18 18 C 1.47422 * 108.70038 * 1.28811 * 9 8 7 19 19 H 1.08998 * 109.47012 * 59.99961 * 1 2 3 20 20 H 1.09003 * 109.47057 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47097 * 299.99971 * 1 2 3 22 22 H 1.09001 * 109.46942 * 240.00129 * 2 1 3 23 23 H 1.08992 * 109.47143 * 120.00463 * 2 1 3 24 24 H 1.09003 * 109.46689 * 64.20716 * 3 2 1 25 25 H 1.08997 * 109.47587 * 304.20359 * 3 2 1 26 26 H 1.09001 * 109.47676 * 175.20953 * 5 4 3 27 27 H 1.09008 * 109.46741 * 295.20871 * 5 4 3 28 28 H 0.96695 * 114.00050 * 180.02562 * 6 5 4 29 29 H 1.08996 * 110.72442 * 88.02538 * 7 4 3 30 30 H 1.09008 * 110.87181 * 324.81705 * 7 4 3 31 31 H 1.09000 * 109.88620 * 262.77551 * 8 7 4 32 32 H 1.09008 * 110.01271 * 141.68163 * 8 7 4 33 33 H 0.97002 * 120.00075 * 179.97438 * 13 12 10 34 34 H 1.09002 * 110.36636 * 94.48089 * 18 9 8 35 35 H 1.08999 * 110.36430 * 216.80780 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5664 1.4437 -0.1057 5 6 4.0205 0.8715 -1.4500 6 8 3.3967 1.5965 -2.5116 7 6 4.2063 0.6660 1.0745 8 6 5.5996 1.3170 1.2024 9 7 5.5161 2.6509 0.5897 10 6 6.5476 3.5449 0.4803 11 1 6.3646 4.5356 0.0911 12 6 7.8285 3.1779 0.8697 13 7 8.0292 2.0213 1.4650 14 14 9.2671 4.3255 0.5489 15 1 9.7767 4.1072 -0.8287 16 1 8.8186 5.7337 0.6935 17 1 10.3495 4.0477 1.5269 18 6 4.1364 2.8690 0.1183 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.7395 1.9340 0.9253 25 1 1.6165 1.9776 -0.8499 26 1 5.1034 0.9612 -1.5360 27 1 3.7370 -0.1793 -1.5119 28 1 3.6391 1.2869 -3.3950 29 1 4.2963 -0.3934 0.8346 30 1 3.6301 0.8053 1.9893 31 1 6.3403 0.7137 0.6776 32 1 5.8736 1.4084 2.2536 33 1 8.9243 1.7646 1.7369 34 1 3.5562 3.3976 0.8747 35 1 4.1392 3.4274 -0.8178 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308491436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:11 Heat of formation + Delta-G solvation = -65.647315 kcal Electronic energy + Delta-G solvation = -15145.929850 eV Core-core repulsion = 12757.051581 eV Total energy + Delta-G solvation = -2388.878269 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34052 -37.16843 -35.84959 -34.03147 -31.53857 -30.09586 -27.37195 -26.92146 -25.12687 -22.70264 -21.66644 -19.79740 -18.70154 -18.06046 -16.86254 -16.42803 -16.31546 -15.63338 -15.04204 -14.45833 -14.17274 -13.92082 -13.77848 -13.75407 -13.14601 -13.00161 -12.78153 -12.51332 -12.25757 -12.14190 -12.01164 -11.83757 -11.61503 -11.32074 -11.14771 -11.11411 -10.72626 -10.60979 -8.88121 -7.86607 -5.20434 1.43794 1.46521 1.54648 2.48899 3.27981 3.38242 3.67316 3.84676 3.96860 4.09512 4.33919 4.43297 4.45534 4.58358 4.66719 4.68124 4.81832 4.92114 5.00855 5.01917 5.09019 5.17376 5.23667 5.28165 5.43421 5.50577 5.53732 5.59661 5.68976 5.78025 6.20050 6.96710 7.10653 7.77999 8.43978 9.24271 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052559 B = 0.008026 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.605576 B = 3487.839991 C = 3685.383819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.061 4.061 5 C 0.106 3.894 6 O -0.579 6.579 7 C -0.117 4.117 8 C 0.184 3.816 9 N -0.626 5.626 10 C -0.244 4.244 11 H 0.076 0.924 12 C -0.065 4.065 13 N -0.950 5.950 14 Si 0.978 3.022 15 H -0.284 1.284 16 H -0.271 1.271 17 H -0.292 1.292 18 C 0.143 3.857 19 H 0.053 0.947 20 H 0.063 0.937 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.019 0.981 27 H 0.066 0.934 28 H 0.391 0.609 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.014 0.986 32 H 0.001 0.999 33 H 0.247 0.753 34 H 0.016 0.984 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.283 -5.371 -4.922 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.126 4.126 4 C -0.062 4.062 5 C 0.028 3.972 6 O -0.387 6.387 7 C -0.155 4.155 8 C 0.059 3.941 9 N -0.352 5.352 10 C -0.374 4.374 11 H 0.094 0.906 12 C -0.258 4.258 13 N -0.599 5.599 14 Si 0.806 3.194 15 H -0.211 1.211 16 H -0.196 1.196 17 H -0.218 1.218 18 C 0.018 3.982 19 H 0.072 0.928 20 H 0.082 0.918 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.240 0.760 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.032 0.968 32 H 0.019 0.981 33 H 0.057 0.943 34 H 0.034 0.966 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.337 -5.024 -4.373 14.020 hybrid contribution 1.576 0.398 -0.337 1.660 sum -10.761 -4.627 -4.710 12.625 Atomic orbital electron populations 1.21736 0.94917 1.01996 1.01783 1.21519 0.96459 0.95637 1.02054 1.21370 0.91599 0.98121 1.01559 1.21698 0.96192 0.94866 0.93449 1.21862 0.94577 0.94379 0.86397 1.86395 1.71922 1.62368 1.17971 1.22790 0.95705 0.99387 0.97634 1.20936 0.93192 0.85255 0.94753 1.44789 1.06154 1.15542 1.68689 1.19422 0.87450 0.94369 1.36115 0.90607 1.25653 0.99861 0.99160 1.01095 1.70197 1.20611 1.23421 1.45675 0.85106 0.78788 0.78327 0.77199 1.21070 1.19620 1.21848 1.21747 0.84937 0.95725 0.95817 0.92812 0.91841 0.92748 0.91953 0.91838 0.92385 0.91698 0.96307 0.91641 0.76040 0.89824 0.90701 0.96809 0.98120 0.94346 0.96595 0.94872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.91 71.98 0.71 -2.04 16 2 C -0.12 -2.71 5.48 30.60 0.17 -2.54 16 3 C -0.09 -2.51 4.23 30.59 0.13 -2.38 16 4 C -0.06 -2.15 0.45 -50.71 -0.02 -2.18 16 5 C 0.11 3.49 5.58 71.98 0.40 3.89 16 6 O -0.58 -17.42 12.47 -148.98 -1.86 -19.28 16 7 C -0.12 -4.35 4.80 31.78 0.15 -4.20 16 8 C 0.18 9.38 5.08 86.73 0.44 9.82 16 9 N -0.63 -33.92 3.37 -691.52 -2.33 -36.25 16 10 C -0.24 -14.42 10.27 84.04 0.86 -13.56 16 11 H 0.08 4.34 7.84 -2.91 -0.02 4.31 16 12 C -0.06 -3.81 5.48 84.86 0.47 -3.35 16 13 N -0.95 -58.65 10.35 21.65 0.22 -58.42 16 14 Si 0.98 47.09 29.56 68.60 2.03 49.12 16 15 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 18 C 0.14 6.39 6.15 86.93 0.53 6.92 16 19 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 20 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.06 1.39 6.60 -2.39 -0.02 1.37 16 23 H 0.06 1.42 7.42 -2.39 -0.02 1.40 16 24 H 0.06 1.64 8.05 -2.39 -0.02 1.62 16 25 H 0.06 1.89 7.51 -2.39 -0.02 1.87 16 26 H 0.02 0.76 7.91 -2.39 -0.02 0.74 16 27 H 0.07 1.79 6.84 -2.38 -0.02 1.77 16 28 H 0.39 7.97 9.12 -74.06 -0.68 7.29 16 29 H 0.08 2.69 8.04 -2.39 -0.02 2.67 16 30 H 0.07 2.59 8.04 -2.38 -0.02 2.57 16 31 H 0.01 0.78 7.27 -2.39 -0.02 0.76 16 32 H 0.00 0.03 7.62 -2.38 -0.02 0.01 16 33 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.02 0.72 7.97 -2.39 -0.02 0.70 16 35 H 0.03 1.53 7.78 -2.39 -0.02 1.52 16 Total: -1.00 -68.89 275.25 2.29 -66.60 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.38 Total: 7.84 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 3.84 Total: -9.60 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -2.10 Total: -94.68 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -1.86 Total: -19.28 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -68.89 2.29 -66.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308491436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.956 kcal (2) G-P(sol) polarization free energy of solvation -68.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds