Wall clock time and date at job start Sun Mar 29 2020 22:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47315 * 2 1 4 4 C 1.52992 * 109.47236 * 179.76824 * 3 2 1 5 5 C 1.53006 * 110.88715 * 301.09679 * 4 3 2 6 6 O 1.42893 * 109.47025 * 304.97306 * 5 4 3 7 7 C 1.55157 * 111.00275 * 64.97941 * 4 3 2 8 8 C 1.54322 * 102.94254 * 82.57217 * 7 4 3 9 9 N 1.47018 * 107.27226 * 22.19236 * 8 7 4 10 10 C 1.36932 * 125.64915 * 181.01812 * 9 8 7 11 11 H 1.07999 * 120.00218 * 180.02562 * 10 9 8 12 12 C 1.38810 * 119.99809 * 359.75526 * 10 9 8 13 13 N 1.31612 * 120.00219 * 0.27076 * 12 10 9 14 14 Si 1.86802 * 119.99925 * 180.27136 * 12 10 9 15 15 H 1.48507 * 109.47369 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47277 * 119.99969 * 14 12 10 17 17 H 1.48501 * 109.47191 * 239.99949 * 14 12 10 18 18 C 1.47426 * 108.70265 * 1.28836 * 9 8 7 19 19 H 1.09002 * 109.47265 * 299.99786 * 1 2 3 20 20 H 1.09004 * 109.47060 * 59.99412 * 1 2 3 21 21 H 1.08997 * 109.47517 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46644 * 240.00646 * 2 1 3 23 23 H 1.08994 * 109.47160 * 120.00590 * 2 1 3 24 24 H 1.09004 * 109.46424 * 59.76980 * 3 2 1 25 25 H 1.08995 * 109.47651 * 299.77353 * 3 2 1 26 26 H 1.09000 * 109.46687 * 64.97528 * 5 4 3 27 27 H 1.08998 * 109.47165 * 184.97541 * 5 4 3 28 28 H 0.96703 * 114.00115 * 179.97438 * 6 5 4 29 29 H 1.08997 * 110.71720 * 324.20644 * 7 4 3 30 30 H 1.09007 * 110.86911 * 201.00898 * 7 4 3 31 31 H 1.08995 * 109.88376 * 262.77198 * 8 7 4 32 32 H 1.09007 * 109.88099 * 141.61296 * 8 7 4 33 33 H 0.96999 * 120.00109 * 179.97438 * 13 12 10 34 34 H 1.09003 * 110.36673 * 94.48054 * 18 9 8 35 35 H 1.08998 * 110.36517 * 216.80087 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0058 5 6 4.1108 0.7058 1.2330 6 8 3.5546 1.2806 2.4171 7 6 4.1311 0.8280 -1.3038 8 6 4.0772 2.0122 -2.2919 9 7 4.0596 3.2465 -1.4934 10 6 3.9937 4.5196 -1.9935 11 1 3.9866 5.3644 -1.3207 12 6 3.9418 4.7245 -3.3654 13 7 3.9504 3.6951 -4.1854 14 14 3.8596 6.4615 -4.0478 15 1 3.8621 7.4348 -2.9261 16 1 5.0365 6.7071 -4.9195 17 1 2.6142 6.6236 -4.8403 18 6 4.1311 2.8869 -0.0655 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 1.6733 1.9574 0.8880 25 1 1.6801 1.9552 -0.8919 26 1 3.8343 -0.3470 1.1757 27 1 5.1967 0.7953 1.2612 28 1 3.8540 0.8619 3.2357 29 1 3.4986 0.0097 -1.6476 30 1 5.1574 0.4881 -1.1646 31 1 3.1729 1.9492 -2.8971 32 1 4.9575 1.9990 -2.9347 33 1 3.9137 3.8383 -5.1440 34 1 5.1643 2.9126 0.2809 35 1 3.5145 3.5627 0.5272 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308491437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:14 Heat of formation + Delta-G solvation = -42.033734 kcal Electronic energy + Delta-G solvation = -15193.236959 eV Core-core repulsion = 12805.382652 eV Total energy + Delta-G solvation = -2387.854307 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.79541 -35.91099 -34.18842 -32.21161 -29.79293 -28.35438 -25.90308 -25.39119 -23.18235 -21.40349 -19.88177 -18.16557 -17.11305 -16.46340 -15.21205 -15.03025 -14.54279 -13.88539 -13.62391 -13.06278 -12.67481 -12.60593 -12.20850 -11.88289 -11.52850 -11.26347 -10.98988 -10.83548 -10.81716 -10.57802 -10.28502 -10.01726 -9.88799 -9.71979 -9.59311 -9.56329 -9.35899 -8.52057 -6.72175 -5.63390 -2.95423 3.44348 3.49916 3.52397 4.52552 4.57432 5.21960 5.25821 5.32387 5.46861 5.57820 5.59307 5.67846 5.71445 5.96705 6.04694 6.09535 6.16713 6.20378 6.33926 6.36480 6.50447 6.55960 6.74787 6.77917 6.90469 6.98512 7.11103 7.65333 7.71613 7.87749 7.90860 8.34820 9.31252 9.91855 10.59247 11.48650 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036578 B = 0.008864 C = 0.008247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.307354 B = 3158.187728 C = 3394.300271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.071 4.071 5 C 0.093 3.907 6 O -0.567 6.567 7 C -0.137 4.137 8 C 0.181 3.819 9 N -0.606 5.606 10 C -0.222 4.222 11 H 0.077 0.923 12 C -0.011 4.011 13 N -0.923 5.923 14 Si 0.910 3.090 15 H -0.280 1.280 16 H -0.292 1.292 17 H -0.291 1.291 18 C 0.151 3.849 19 H 0.050 0.950 20 H 0.053 0.947 21 H 0.046 0.954 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.368 0.632 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.250 0.750 34 H 0.014 0.986 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 -8.549 9.440 12.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.072 4.072 5 C 0.015 3.985 6 O -0.371 6.371 7 C -0.175 4.175 8 C 0.057 3.943 9 N -0.332 5.332 10 C -0.351 4.351 11 H 0.095 0.905 12 C -0.207 4.207 13 N -0.572 5.572 14 Si 0.741 3.259 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.219 1.219 18 C 0.025 3.975 19 H 0.069 0.931 20 H 0.073 0.927 21 H 0.065 0.935 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.213 0.787 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.302 -8.041 8.777 12.124 hybrid contribution 0.360 0.485 -0.083 0.610 sum -1.941 -7.556 8.694 11.681 Atomic orbital electron populations 1.21751 0.96527 1.00669 1.01731 1.21589 0.95250 0.98012 1.01175 1.21304 0.93370 0.95662 1.02409 1.21776 0.95932 0.97180 0.92299 1.22203 0.95898 0.95472 0.84958 1.86558 1.72431 1.62299 1.15767 1.22991 0.99191 0.99616 0.95726 1.21083 1.00814 0.81855 0.90597 1.44489 1.86752 1.02435 0.99507 1.19125 1.42798 0.82621 0.90514 0.90501 1.24781 1.02654 0.97360 0.95913 1.69975 1.57614 1.27621 1.01959 0.86063 0.77169 0.83885 0.78802 1.20558 1.21868 1.21861 1.21549 0.96366 0.92160 0.87396 0.93087 0.92745 0.93517 0.92189 0.92682 0.92018 0.91123 0.94080 0.94134 0.78656 0.91851 0.92740 0.93633 0.94214 0.93959 0.96810 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.80 5.41 -26.73 -0.14 -1.95 16 3 C -0.09 -1.61 4.12 -26.74 -0.11 -1.72 16 4 C -0.07 -1.30 0.45 -152.24 -0.07 -1.37 16 5 C 0.09 1.37 5.50 37.16 0.20 1.57 16 6 O -0.57 -8.04 12.82 -35.23 -0.45 -8.49 16 7 C -0.14 -2.63 5.82 -24.90 -0.14 -2.77 16 8 C 0.18 4.53 5.00 -3.07 -0.02 4.51 16 9 N -0.61 -16.08 3.38 -169.94 -0.57 -16.66 16 10 C -0.22 -6.42 10.28 -15.06 -0.15 -6.57 16 11 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 12 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 13 N -0.92 -27.76 10.31 55.49 0.57 -27.19 16 14 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 18 C 0.15 3.38 6.08 -2.41 -0.01 3.37 16 19 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.89 6.40 -51.93 -0.33 0.55 16 23 H 0.05 0.75 6.63 -51.93 -0.34 0.40 16 24 H 0.06 1.13 7.70 -51.93 -0.40 0.73 16 25 H 0.07 1.48 7.83 -51.93 -0.41 1.07 16 26 H 0.04 0.53 6.82 -51.93 -0.35 0.18 16 27 H 0.04 0.58 8.05 -51.93 -0.42 0.16 16 28 H 0.37 3.29 9.12 45.56 0.42 3.71 16 29 H 0.06 1.10 6.21 -51.93 -0.32 0.78 16 30 H 0.05 0.97 8.04 -51.92 -0.42 0.56 16 31 H 0.05 1.25 7.39 -51.93 -0.38 0.87 16 32 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 33 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.01 0.32 7.97 -51.93 -0.41 -0.10 16 35 H 0.04 0.92 8.06 -51.93 -0.42 0.50 16 LS Contribution 273.73 15.07 4.13 4.13 Total: -1.00 -31.67 273.73 -6.53 -38.20 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.00 Total: -0.72 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -0.18 Total: -6.97 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.00 Total: -43.85 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.45 Total: -8.49 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.67 -6.53 -38.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308491437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.834 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds