Wall clock time and date at job start Sun Mar 29 2020 22:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47315 * 2 1 4 4 C 1.52992 * 109.47236 * 179.76824 * 3 2 1 5 5 C 1.53006 * 110.88715 * 301.09679 * 4 3 2 6 6 O 1.42893 * 109.47025 * 304.97306 * 5 4 3 7 7 C 1.55157 * 111.00275 * 64.97941 * 4 3 2 8 8 C 1.54322 * 102.94254 * 82.57217 * 7 4 3 9 9 N 1.47018 * 107.27226 * 22.19236 * 8 7 4 10 10 C 1.36932 * 125.64915 * 181.01812 * 9 8 7 11 11 H 1.07999 * 120.00218 * 180.02562 * 10 9 8 12 12 C 1.38810 * 119.99809 * 359.75526 * 10 9 8 13 13 N 1.31612 * 120.00219 * 0.27076 * 12 10 9 14 14 Si 1.86802 * 119.99925 * 180.27136 * 12 10 9 15 15 H 1.48507 * 109.47369 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47277 * 119.99969 * 14 12 10 17 17 H 1.48501 * 109.47191 * 239.99949 * 14 12 10 18 18 C 1.47426 * 108.70265 * 1.28836 * 9 8 7 19 19 H 1.09002 * 109.47265 * 299.99786 * 1 2 3 20 20 H 1.09004 * 109.47060 * 59.99412 * 1 2 3 21 21 H 1.08997 * 109.47517 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46644 * 240.00646 * 2 1 3 23 23 H 1.08994 * 109.47160 * 120.00590 * 2 1 3 24 24 H 1.09004 * 109.46424 * 59.76980 * 3 2 1 25 25 H 1.08995 * 109.47651 * 299.77353 * 3 2 1 26 26 H 1.09000 * 109.46687 * 64.97528 * 5 4 3 27 27 H 1.08998 * 109.47165 * 184.97541 * 5 4 3 28 28 H 0.96703 * 114.00115 * 179.97438 * 6 5 4 29 29 H 1.08997 * 110.71720 * 324.20644 * 7 4 3 30 30 H 1.09007 * 110.86911 * 201.00898 * 7 4 3 31 31 H 1.08995 * 109.88376 * 262.77198 * 8 7 4 32 32 H 1.09007 * 109.88099 * 141.61296 * 8 7 4 33 33 H 0.96999 * 120.00109 * 179.97438 * 13 12 10 34 34 H 1.09003 * 110.36673 * 94.48054 * 18 9 8 35 35 H 1.08998 * 110.36517 * 216.80087 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0058 5 6 4.1108 0.7058 1.2330 6 8 3.5546 1.2806 2.4171 7 6 4.1311 0.8280 -1.3038 8 6 4.0772 2.0122 -2.2919 9 7 4.0596 3.2465 -1.4934 10 6 3.9937 4.5196 -1.9935 11 1 3.9866 5.3644 -1.3207 12 6 3.9418 4.7245 -3.3654 13 7 3.9504 3.6951 -4.1854 14 14 3.8596 6.4615 -4.0478 15 1 3.8621 7.4348 -2.9261 16 1 5.0365 6.7071 -4.9195 17 1 2.6142 6.6236 -4.8403 18 6 4.1311 2.8869 -0.0655 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 1.6733 1.9574 0.8880 25 1 1.6801 1.9552 -0.8919 26 1 3.8343 -0.3470 1.1757 27 1 5.1967 0.7953 1.2612 28 1 3.8540 0.8619 3.2357 29 1 3.4986 0.0097 -1.6476 30 1 5.1574 0.4881 -1.1646 31 1 3.1729 1.9492 -2.8971 32 1 4.9575 1.9990 -2.9347 33 1 3.9137 3.8383 -5.1440 34 1 5.1643 2.9126 0.2809 35 1 3.5145 3.5627 0.5272 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308491437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:14 Heat of formation + Delta-G solvation = -64.456312 kcal Electronic energy + Delta-G solvation = -15194.209275 eV Core-core repulsion = 12805.382652 eV Total energy + Delta-G solvation = -2388.826623 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.34572 -37.26989 -35.67912 -34.02086 -31.60124 -30.10394 -27.41084 -27.03713 -24.92276 -22.78225 -21.74372 -19.73173 -18.74287 -17.95799 -16.89752 -16.49735 -16.26758 -15.64286 -15.08020 -14.45593 -14.12545 -14.06949 -13.89329 -13.58480 -13.02123 -12.93605 -12.85927 -12.52620 -12.26516 -12.19452 -11.98094 -11.83752 -11.67582 -11.26616 -11.16151 -11.06149 -10.71508 -10.63049 -8.87750 -7.85422 -5.20152 1.43190 1.44629 1.55155 2.48568 3.31264 3.36019 3.78819 3.83684 3.98486 4.00656 4.29640 4.43817 4.47778 4.61498 4.64799 4.70953 4.76178 4.89425 4.93903 4.95871 5.12633 5.14638 5.21765 5.27448 5.43814 5.46490 5.53828 5.62302 5.70109 5.79427 6.20295 7.08251 7.11180 7.78487 8.43909 9.25211 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036578 B = 0.008864 C = 0.008247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.307354 B = 3158.187728 C = 3394.300271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.084 4.084 4 C -0.063 4.063 5 C 0.102 3.898 6 O -0.584 6.584 7 C -0.122 4.122 8 C 0.189 3.811 9 N -0.626 5.626 10 C -0.243 4.243 11 H 0.077 0.923 12 C -0.067 4.067 13 N -0.951 5.951 14 Si 0.978 3.022 15 H -0.267 1.267 16 H -0.290 1.290 17 H -0.291 1.291 18 C 0.146 3.854 19 H 0.054 0.946 20 H 0.038 0.962 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.055 0.945 25 H 0.027 0.973 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.394 0.606 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.009 0.991 32 H 0.004 0.996 33 H 0.246 0.754 34 H 0.017 0.983 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 -9.787 11.081 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.121 4.121 4 C -0.064 4.064 5 C 0.024 3.976 6 O -0.392 6.392 7 C -0.160 4.160 8 C 0.064 3.936 9 N -0.352 5.352 10 C -0.372 4.372 11 H 0.095 0.905 12 C -0.260 4.260 13 N -0.600 5.600 14 Si 0.807 3.193 15 H -0.192 1.192 16 H -0.216 1.216 17 H -0.218 1.218 18 C 0.021 3.979 19 H 0.073 0.927 20 H 0.057 0.943 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.096 0.904 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.243 0.757 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.027 0.973 32 H 0.022 0.978 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.317 -9.294 10.472 14.192 hybrid contribution 0.360 0.905 -0.544 1.116 sum -1.957 -8.389 9.927 13.144 Atomic orbital electron populations 1.21743 0.95580 1.02066 1.01208 1.21543 0.96128 0.95390 1.02233 1.21210 0.93215 0.97732 0.99970 1.21736 0.96058 0.94563 0.94069 1.22024 0.96085 0.96063 0.83464 1.86493 1.72731 1.63169 1.16809 1.22844 1.01112 0.97574 0.94454 1.20842 0.97301 0.83984 0.91460 1.44789 1.86546 1.02244 1.01636 1.19487 1.42655 0.83989 0.91041 0.90535 1.25647 1.02731 1.01429 0.96201 1.70199 1.58388 1.29590 1.01806 0.85007 0.76828 0.79388 0.78106 1.19192 1.21647 1.21799 1.21724 0.96446 0.94812 0.84904 0.92735 0.94253 0.91123 0.92101 0.90394 0.92583 0.95396 0.91015 0.93264 0.75678 0.89584 0.90725 0.97317 0.97824 0.94426 0.96511 0.95454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.91 71.98 0.71 -2.90 16 2 C -0.12 -3.08 5.41 30.59 0.17 -2.92 16 3 C -0.08 -2.93 4.12 30.59 0.13 -2.80 16 4 C -0.06 -2.22 0.45 -50.71 -0.02 -2.25 16 5 C 0.10 2.61 5.50 71.98 0.40 3.00 16 6 O -0.58 -14.50 12.82 -148.98 -1.91 -16.41 16 7 C -0.12 -4.52 5.82 31.78 0.18 -4.34 16 8 C 0.19 9.77 5.00 86.73 0.43 10.20 16 9 N -0.63 -34.25 3.38 -691.56 -2.34 -36.59 16 10 C -0.24 -14.44 10.28 84.03 0.86 -13.57 16 11 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 12 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 13 N -0.95 -59.26 10.31 21.65 0.22 -59.03 16 14 Si 0.98 47.67 29.55 68.60 2.03 49.70 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 16 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 17 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 18 C 0.15 6.55 6.08 86.93 0.53 7.08 16 19 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 20 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.06 1.62 6.40 -2.39 -0.02 1.60 16 23 H 0.08 1.76 6.63 -2.39 -0.02 1.74 16 24 H 0.06 2.00 7.70 -2.38 -0.02 1.98 16 25 H 0.03 1.19 7.83 -2.39 -0.02 1.17 16 26 H 0.07 1.46 6.82 -2.39 -0.02 1.45 16 27 H 0.05 1.21 8.05 -2.39 -0.02 1.19 16 28 H 0.39 5.38 9.12 -74.05 -0.68 4.71 16 29 H 0.09 2.82 6.21 -2.39 -0.01 2.80 16 30 H 0.07 2.49 8.04 -2.38 -0.02 2.47 16 31 H 0.01 0.50 7.39 -2.39 -0.02 0.48 16 32 H 0.00 0.21 7.50 -2.38 -0.02 0.19 16 33 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.02 0.75 7.97 -2.39 -0.02 0.73 16 35 H 0.03 1.27 8.06 -2.39 -0.02 1.25 16 Total: -1.00 -70.95 273.73 2.24 -68.71 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 0.38 Total: 5.65 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 3.85 Total: -12.03 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -2.11 Total: -95.62 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -1.91 Total: -16.41 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -70.95 2.24 -68.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308491437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.250 kcal (2) G-P(sol) polarization free energy of solvation -70.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds