Wall clock time and date at job start Sun Mar 29 2020 22:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 116.99834 * 2 1 4 4 O 1.20820 * 120.00206 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99516 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.43694 * 321.60955 * 5 3 2 7 7 C 1.54894 * 110.48584 * 198.92787 * 5 3 2 8 8 C 1.54886 * 102.75271 * 203.38113 * 7 5 3 9 9 C 1.54272 * 104.19340 * 37.93903 * 8 7 5 10 10 C 1.53873 * 106.59844 * 336.39300 * 9 8 7 11 11 H 1.09006 * 110.06983 * 240.69223 * 10 9 8 12 12 N 1.46496 * 110.03320 * 119.28791 * 10 9 8 13 13 C 1.36936 * 120.00339 * 90.40436 * 12 10 9 14 14 H 1.08001 * 119.99925 * 0.02562 * 13 12 10 15 15 C 1.38816 * 119.99970 * 180.02562 * 13 12 10 16 16 N 1.31619 * 119.99600 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99943 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.46980 * 90.00395 * 17 15 13 19 19 H 1.48504 * 109.46797 * 209.99690 * 17 15 13 20 20 H 1.48497 * 109.47457 * 329.99762 * 17 15 13 21 21 H 1.09000 * 109.47190 * 300.00397 * 1 2 3 22 22 H 1.09004 * 109.47057 * 59.99879 * 1 2 3 23 23 H 1.09002 * 109.47580 * 180.02562 * 1 2 3 24 24 H 1.09003 * 110.75623 * 321.69688 * 7 5 3 25 25 H 1.08999 * 110.75689 * 85.05805 * 7 5 3 26 26 H 1.08997 * 110.48720 * 156.61796 * 8 7 5 27 27 H 1.09004 * 110.48166 * 279.13306 * 8 7 5 28 28 H 1.08997 * 110.02879 * 217.10568 * 9 8 7 29 29 H 1.08998 * 110.02906 * 95.67867 * 9 8 7 30 30 H 0.97006 * 119.99631 * 270.13286 * 12 10 9 31 31 H 0.96998 * 119.99519 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9885 0.4951 0.6334 7 6 4.0360 2.6737 0.4702 8 6 5.4504 2.7863 -0.1510 9 6 5.3105 2.1174 -1.5340 10 6 4.1126 1.1564 -1.4384 11 1 4.4370 0.1338 -1.6315 12 7 3.0794 1.5450 -2.4014 13 6 3.0890 1.0189 -3.6657 14 1 3.8582 0.3171 -3.9527 15 6 2.1102 1.3876 -4.5784 16 7 2.1193 0.8815 -5.7933 17 14 0.7803 2.6019 -4.0822 18 1 1.2330 3.9832 -4.3861 19 1 -0.4634 2.3107 -4.8396 20 1 0.5141 2.4772 -2.6266 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.3802 3.4526 0.0812 25 1 4.0872 2.7182 1.5581 26 1 5.7369 3.8323 -0.2603 27 1 6.1791 2.2540 0.4606 28 1 6.2170 1.5614 -1.7732 29 1 5.1231 2.8729 -2.2970 30 1 2.3860 2.1720 -2.1423 31 1 1.4355 1.1394 -6.4312 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308503609.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:29 Heat of formation + Delta-G solvation = -81.508667 kcal Electronic energy + Delta-G solvation = -15045.556332 eV Core-core repulsion = 12520.157168 eV Total energy + Delta-G solvation = -2525.399163 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.29506 -37.73554 -35.83750 -33.60988 -30.96165 -29.49482 -27.33434 -26.83533 -23.09461 -21.93153 -20.03075 -19.23600 -17.87927 -17.15968 -16.30076 -15.82325 -15.11281 -14.32237 -14.11795 -13.68386 -13.17297 -12.84508 -12.43864 -12.24157 -11.79824 -11.64131 -11.25799 -10.87439 -10.75365 -10.65618 -10.49289 -10.38526 -10.24909 -10.12452 -9.77589 -9.56854 -8.94736 -7.31189 -5.78017 -3.14561 2.68481 3.16015 3.40052 3.46864 3.51983 4.60686 4.79934 4.94356 5.05415 5.37278 5.41310 5.47184 5.52950 5.55354 5.64058 5.82938 5.84884 5.91921 6.00820 6.09525 6.27898 6.36954 6.51971 6.65788 6.84487 6.96089 7.96987 8.20992 8.40572 9.18429 9.91372 10.09524 11.39742 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.014866 C = 0.011092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.243915 B = 1883.085838 C = 2523.742396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.485 3.515 4 O -0.516 6.516 5 C -0.103 4.103 6 H 0.106 0.894 7 C -0.110 4.110 8 C -0.121 4.121 9 C -0.144 4.144 10 C 0.192 3.808 11 H 0.072 0.928 12 N -0.749 5.749 13 C -0.245 4.245 14 H 0.093 0.907 15 C 0.010 3.990 16 N -0.931 5.931 17 Si 0.870 3.130 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.268 1.268 21 H 0.056 0.944 22 H 0.063 0.937 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.366 0.634 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.440 0.261 13.946 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.328 3.672 4 O -0.404 6.404 5 C -0.123 4.123 6 H 0.124 0.876 7 C -0.147 4.147 8 C -0.159 4.159 9 C -0.185 4.185 10 C 0.081 3.919 11 H 0.090 0.910 12 N -0.394 5.394 13 C -0.375 4.375 14 H 0.111 0.889 15 C -0.186 4.186 16 N -0.579 5.579 17 Si 0.699 3.301 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.194 1.194 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.115 0.885 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.201 0.799 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.239 0.406 13.712 13.900 hybrid contribution -1.288 0.909 0.139 1.583 sum 0.951 1.315 13.851 13.946 Atomic orbital electron populations 1.23185 0.77126 1.03216 1.02177 1.86492 1.22836 1.33660 1.83924 1.23394 0.91736 0.81177 0.70869 1.90616 1.67208 1.36475 1.46130 1.22422 0.87416 1.00568 1.01903 0.87608 1.22484 0.97286 0.95182 0.99761 1.22323 0.95777 1.00673 0.97093 1.22968 0.99002 0.99965 0.96550 1.20789 0.88670 0.97842 0.84569 0.90955 1.43056 1.30727 1.54003 1.11581 1.19061 1.10842 1.21281 0.86275 0.88913 1.24623 0.98600 0.99693 0.95705 1.69696 1.36463 1.47148 1.04568 0.86755 0.82695 0.82160 0.78475 1.20947 1.21660 1.19393 0.92570 0.91838 0.88467 0.89928 0.91609 0.91786 0.91895 0.92096 0.90474 0.79939 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.56 101.05 1.07 1.64 16 2 O -0.35 -6.52 10.57 -39.27 -0.41 -6.93 16 3 C 0.48 9.36 5.69 36.01 0.21 9.57 16 4 O -0.52 -11.13 14.72 -18.75 -0.28 -11.40 16 5 C -0.10 -1.69 3.33 -90.11 -0.30 -1.99 16 6 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 7 C -0.11 -1.61 6.13 -24.74 -0.15 -1.76 16 8 C -0.12 -1.62 6.83 -25.07 -0.17 -1.79 16 9 C -0.14 -2.41 6.60 -25.61 -0.17 -2.58 16 10 C 0.19 3.69 3.43 -66.82 -0.23 3.46 16 11 H 0.07 1.39 8.07 -51.93 -0.42 0.97 16 12 N -0.75 -18.28 4.13 -52.34 -0.22 -18.49 16 13 C -0.25 -6.98 10.43 -15.06 -0.16 -7.14 16 14 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 15 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 16 N -0.93 -29.55 13.97 55.49 0.78 -28.78 16 17 Si 0.87 23.13 27.74 -169.99 -4.72 18.42 16 18 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 19 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 20 H -0.27 -7.08 6.51 56.52 0.37 -6.71 16 21 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 22 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 23 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.08 1.40 7.26 -51.93 -0.38 1.03 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.47 7.92 -51.93 -0.41 1.06 16 30 H 0.37 9.27 4.02 -40.82 -0.16 9.10 16 31 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 259.10 15.07 3.90 3.90 Total: -1.00 -33.16 259.10 -5.29 -38.44 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.34 Total: 5.23 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 0.00 Total: -0.39 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.56 Total: -47.27 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.69 Total: -18.34 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.72 Total: 18.42 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -33.16 -5.29 -38.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308503609.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.064 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds