Wall clock time and date at job start Sun Mar 29 2020 22:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 116.99834 * 2 1 4 4 O 1.20820 * 120.00206 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99516 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.43694 * 321.60955 * 5 3 2 7 7 C 1.54894 * 110.48584 * 198.92787 * 5 3 2 8 8 C 1.54886 * 102.75271 * 203.38113 * 7 5 3 9 9 C 1.54272 * 104.19340 * 37.93903 * 8 7 5 10 10 C 1.53873 * 106.59844 * 336.39300 * 9 8 7 11 11 H 1.09006 * 110.06983 * 240.69223 * 10 9 8 12 12 N 1.46496 * 110.03320 * 119.28791 * 10 9 8 13 13 C 1.36936 * 120.00339 * 90.40436 * 12 10 9 14 14 H 1.08001 * 119.99925 * 0.02562 * 13 12 10 15 15 C 1.38816 * 119.99970 * 180.02562 * 13 12 10 16 16 N 1.31619 * 119.99600 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99943 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.46980 * 90.00395 * 17 15 13 19 19 H 1.48504 * 109.46797 * 209.99690 * 17 15 13 20 20 H 1.48497 * 109.47457 * 329.99762 * 17 15 13 21 21 H 1.09000 * 109.47190 * 300.00397 * 1 2 3 22 22 H 1.09004 * 109.47057 * 59.99879 * 1 2 3 23 23 H 1.09002 * 109.47580 * 180.02562 * 1 2 3 24 24 H 1.09003 * 110.75623 * 321.69688 * 7 5 3 25 25 H 1.08999 * 110.75689 * 85.05805 * 7 5 3 26 26 H 1.08997 * 110.48720 * 156.61796 * 8 7 5 27 27 H 1.09004 * 110.48166 * 279.13306 * 8 7 5 28 28 H 1.08997 * 110.02879 * 217.10568 * 9 8 7 29 29 H 1.08998 * 110.02906 * 95.67867 * 9 8 7 30 30 H 0.97006 * 119.99631 * 270.13286 * 12 10 9 31 31 H 0.96998 * 119.99519 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9885 0.4951 0.6334 7 6 4.0360 2.6737 0.4702 8 6 5.4504 2.7863 -0.1510 9 6 5.3105 2.1174 -1.5340 10 6 4.1126 1.1564 -1.4384 11 1 4.4370 0.1338 -1.6315 12 7 3.0794 1.5450 -2.4014 13 6 3.0890 1.0189 -3.6657 14 1 3.8582 0.3171 -3.9527 15 6 2.1102 1.3876 -4.5784 16 7 2.1193 0.8815 -5.7933 17 14 0.7803 2.6019 -4.0822 18 1 1.2330 3.9832 -4.3861 19 1 -0.4634 2.3107 -4.8396 20 1 0.5141 2.4772 -2.6266 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.3802 3.4526 0.0812 25 1 4.0872 2.7182 1.5581 26 1 5.7369 3.8323 -0.2603 27 1 6.1791 2.2540 0.4606 28 1 6.2170 1.5614 -1.7732 29 1 5.1231 2.8729 -2.2970 30 1 2.3860 2.1720 -2.1423 31 1 1.4355 1.1394 -6.4312 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308503609.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:29 Heat of formation + Delta-G solvation = -103.615710 kcal Electronic energy + Delta-G solvation = -15046.514965 eV Core-core repulsion = 12520.157168 eV Total energy + Delta-G solvation = -2526.357797 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.74574 -39.14519 -37.33555 -35.55558 -33.01399 -30.81193 -28.77546 -28.22501 -25.06950 -23.38779 -21.28020 -20.78185 -19.89146 -18.64004 -17.74487 -17.37301 -16.70549 -16.06111 -15.70417 -15.16244 -14.83533 -14.34383 -14.12776 -13.92963 -13.42556 -13.09389 -12.94087 -12.44092 -12.41502 -12.12274 -11.93791 -11.83888 -11.80880 -11.70697 -11.47700 -11.26741 -11.04955 -9.39380 -8.09186 -5.41125 1.19897 1.26734 1.29370 1.37675 1.84739 2.38729 3.21920 3.47134 3.58703 3.67373 4.02405 4.22177 4.26927 4.29702 4.49533 4.51452 4.62203 4.63065 4.70631 4.87671 5.07108 5.18916 5.31204 5.33542 5.45977 5.59860 5.74499 6.15990 6.75087 7.00525 7.76928 7.92997 9.12102 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.014866 C = 0.011092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.243915 B = 1883.085838 C = 2523.742396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.476 3.524 4 O -0.545 6.545 5 C -0.098 4.098 6 H 0.146 0.854 7 C -0.107 4.107 8 C -0.107 4.107 9 C -0.141 4.141 10 C 0.176 3.824 11 H 0.070 0.930 12 N -0.757 5.757 13 C -0.222 4.222 14 H 0.071 0.929 15 C -0.052 4.052 16 N -0.976 5.976 17 Si 0.930 3.070 18 H -0.281 1.281 19 H -0.290 1.290 20 H -0.268 1.268 21 H 0.073 0.927 22 H 0.036 0.964 23 H 0.132 0.868 24 H 0.053 0.947 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.361 0.639 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 0.407 16.414 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C 0.321 3.679 4 O -0.435 6.435 5 C -0.118 4.118 6 H 0.164 0.836 7 C -0.144 4.144 8 C -0.145 4.145 9 C -0.181 4.181 10 C 0.068 3.932 11 H 0.088 0.912 12 N -0.401 5.401 13 C -0.353 4.353 14 H 0.089 0.911 15 C -0.244 4.244 16 N -0.627 5.627 17 Si 0.759 3.241 18 H -0.208 1.208 19 H -0.216 1.216 20 H -0.194 1.194 21 H 0.092 0.908 22 H 0.055 0.945 23 H 0.150 0.850 24 H 0.072 0.928 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.195 0.805 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.084 0.547 16.233 16.532 hybrid contribution -1.489 0.782 -0.577 1.778 sum 1.595 1.329 15.656 15.793 Atomic orbital electron populations 1.23452 0.75765 1.05458 1.01692 1.86488 1.24352 1.33411 1.83549 1.24033 0.92915 0.80943 0.70003 1.90598 1.68107 1.37362 1.47434 1.22557 0.85640 1.03201 1.00377 0.83621 1.22513 0.97213 0.92952 1.01762 1.22300 0.95799 1.01497 0.94867 1.22823 0.98205 0.98880 0.98216 1.21162 0.88470 0.98311 0.85231 0.91162 1.43129 1.32077 1.53827 1.11067 1.19088 1.09084 1.19332 0.87766 0.91105 1.25240 1.01122 1.02102 0.95942 1.69827 1.37709 1.49380 1.05758 0.85783 0.80305 0.80132 0.77861 1.20774 1.21618 1.19374 0.90826 0.94531 0.84988 0.92793 0.88300 0.90705 0.88344 0.90446 0.93537 0.80484 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 10.56 113.37 1.20 2.07 16 2 O -0.36 -12.76 10.57 -51.45 -0.54 -13.31 16 3 C 0.48 17.59 5.69 71.24 0.41 18.00 16 4 O -0.54 -22.96 14.72 21.98 0.32 -22.64 16 5 C -0.10 -2.94 3.33 -10.46 -0.03 -2.97 16 6 H 0.15 3.21 8.14 -2.39 -0.02 3.19 16 7 C -0.11 -2.77 6.13 31.89 0.20 -2.58 16 8 C -0.11 -2.43 6.83 31.67 0.22 -2.21 16 9 C -0.14 -4.41 6.60 31.32 0.21 -4.21 16 10 C 0.18 6.50 3.43 45.71 0.16 6.66 16 11 H 0.07 2.60 8.07 -2.38 -0.02 2.58 16 12 N -0.76 -36.72 4.13 -319.52 -1.32 -38.05 16 13 C -0.22 -12.80 10.43 84.03 0.88 -11.93 16 14 H 0.07 4.34 8.06 -2.91 -0.02 4.32 16 15 C -0.05 -3.16 5.50 84.86 0.47 -2.70 16 16 N -0.98 -63.35 13.97 21.65 0.30 -63.05 16 17 Si 0.93 48.96 27.74 68.60 1.90 50.86 16 18 H -0.28 -14.58 7.11 99.48 0.71 -13.87 16 19 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 20 H -0.27 -13.95 6.51 99.48 0.65 -13.30 16 21 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 22 H 0.04 1.26 8.13 -2.39 -0.02 1.24 16 23 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 24 H 0.05 1.73 7.26 -2.39 -0.02 1.71 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.10 1.61 8.14 -2.38 -0.02 1.60 16 28 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.74 7.92 -2.39 -0.02 1.72 16 30 H 0.36 18.21 4.02 -92.70 -0.37 17.83 16 31 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -72.87 259.10 5.03 -67.83 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.68 Total: 18.21 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 3.69 Total: 0.14 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -1.02 Total: -101.10 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.22 Total: -35.95 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 1.90 Total: 50.86 kcal Total: -72.87 5.03 -67.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308503609.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.782 kcal (2) G-P(sol) polarization free energy of solvation -72.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds