Wall clock time and date at job start Sun Mar 29 2020 22:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00075 * 2 1 4 4 O 1.20824 * 119.99866 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00075 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.05579 * 301.42571 * 5 3 2 7 7 C 1.54266 * 110.02909 * 62.83799 * 5 3 2 8 8 C 1.55238 * 104.23333 * 142.89580 * 7 5 3 9 9 C 1.54894 * 102.58338 * 322.08174 * 8 7 5 10 10 C 1.53869 * 110.03024 * 180.02562 * 5 3 2 11 11 H 1.08995 * 110.03881 * 0.02562 * 10 5 3 12 12 N 1.46500 * 110.02860 * 121.43481 * 10 5 3 13 13 C 1.36942 * 119.99895 * 203.61654 * 12 10 5 14 14 H 1.07996 * 119.99733 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99705 * 180.02562 * 13 12 10 16 16 N 1.31626 * 119.99525 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00449 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46926 * 89.99963 * 17 15 13 19 19 H 1.48498 * 109.47504 * 210.00072 * 17 15 13 20 20 H 1.48506 * 109.46933 * 330.00418 * 17 15 13 21 21 H 1.08996 * 109.47346 * 59.99807 * 1 2 3 22 22 H 1.09000 * 109.47314 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47171 * 299.99809 * 1 2 3 24 24 H 1.09005 * 110.48526 * 261.57452 * 7 5 3 25 25 H 1.09006 * 110.48581 * 24.21645 * 7 5 3 26 26 H 1.08996 * 110.89448 * 203.79739 * 8 7 5 27 27 H 1.08993 * 110.76342 * 80.31404 * 8 7 5 28 28 H 1.09002 * 110.48891 * 279.18596 * 9 8 7 29 29 H 1.08998 * 110.48494 * 156.67683 * 9 8 7 30 30 H 0.96998 * 119.99985 * 23.61820 * 12 10 5 31 31 H 0.97003 * 119.99350 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9673 0.7615 0.8745 7 6 4.1292 0.6415 -1.2886 8 6 5.3423 1.5377 -1.6560 9 6 4.8380 2.9554 -1.2887 10 6 4.0170 2.7461 0.0011 11 1 3.1474 3.4031 0.0014 12 7 4.8499 3.0153 1.1759 13 6 4.9650 4.2929 1.6554 14 1 4.4414 5.1018 1.1677 15 6 5.7546 4.5480 2.7682 16 7 5.8648 5.7759 3.2293 17 14 6.6596 3.1487 3.6121 18 1 8.0046 2.9903 3.0028 19 1 6.8041 3.4534 5.0583 20 1 5.8896 1.8897 3.4459 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 4.4543 -0.3818 -1.1004 25 1 3.3829 0.6657 -2.0828 26 1 5.5663 1.4713 -2.7207 27 1 6.2144 1.2712 -1.0592 28 1 4.2063 3.3534 -2.0829 29 1 5.6792 3.6228 -1.1011 30 1 5.3198 2.2886 1.6141 31 1 6.4169 5.9542 4.0067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308503614.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:32 Heat of formation + Delta-G solvation = -102.235776 kcal Electronic energy + Delta-G solvation = -14606.258537 eV Core-core repulsion = 12079.960579 eV Total energy + Delta-G solvation = -2526.297958 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.77243 -39.18432 -37.39952 -35.53480 -32.98380 -30.89165 -28.63274 -28.24162 -25.17576 -23.17626 -21.59058 -20.76883 -19.67585 -18.71612 -17.70687 -17.39796 -16.71073 -16.22201 -15.57231 -15.00986 -14.84620 -14.50759 -14.09227 -13.92860 -13.16464 -13.08869 -12.83283 -12.53332 -12.30469 -12.20225 -11.88791 -11.84902 -11.81065 -11.67181 -11.63893 -11.23404 -10.96696 -9.33143 -8.02663 -5.37422 1.14202 1.36760 1.42232 1.48989 1.70567 2.48424 3.26324 3.45764 3.54281 3.72537 3.99433 4.23484 4.32006 4.32662 4.46131 4.49341 4.63512 4.71209 4.81124 4.86302 5.04015 5.16009 5.26910 5.37441 5.42581 5.50492 5.77801 6.20584 6.71017 7.06436 7.80067 8.02191 9.19189 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032289 B = 0.009345 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.960961 B = 2995.652812 C = 3273.153853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.094 4.094 6 H 0.118 0.882 7 C -0.096 4.096 8 C -0.111 4.111 9 C -0.143 4.143 10 C 0.172 3.828 11 H 0.047 0.953 12 N -0.744 5.744 13 C -0.232 4.232 14 H 0.048 0.952 15 C -0.066 4.066 16 N -0.986 5.986 17 Si 0.959 3.041 18 H -0.272 1.272 19 H -0.297 1.297 20 H -0.249 1.249 21 H 0.063 0.937 22 H 0.138 0.862 23 H 0.053 0.947 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.367 0.633 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 -17.358 -9.822 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.114 4.114 6 H 0.135 0.865 7 C -0.133 4.133 8 C -0.149 4.149 9 C -0.183 4.183 10 C 0.063 3.937 11 H 0.065 0.935 12 N -0.388 5.388 13 C -0.363 4.363 14 H 0.066 0.934 15 C -0.257 4.257 16 N -0.636 5.636 17 Si 0.786 3.214 18 H -0.198 1.198 19 H -0.224 1.224 20 H -0.173 1.173 21 H 0.082 0.918 22 H 0.156 0.844 23 H 0.072 0.928 24 H 0.124 0.876 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.202 0.798 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.773 -16.853 -9.805 20.334 hybrid contribution 0.178 0.307 1.010 1.071 sum -5.595 -16.546 -8.795 19.556 Atomic orbital electron populations 1.23574 0.74996 1.05856 1.02307 1.86499 1.24834 1.32093 1.83742 1.23886 0.92406 0.81211 0.70850 1.90652 1.67740 1.37695 1.46697 1.22088 0.86547 0.98795 1.04011 0.86454 1.22373 0.97604 1.00194 0.93147 1.22515 0.97347 0.92748 1.02265 1.22950 0.99727 0.98701 0.96918 1.21029 0.92960 0.92438 0.87248 0.93543 1.42716 1.57413 1.05458 1.33172 1.18975 1.22983 0.85684 1.08651 0.93360 1.25567 1.01785 0.99042 0.99313 1.69911 1.45347 1.20955 1.27425 0.85350 0.79163 0.79695 0.77220 1.19813 1.22385 1.17296 0.91835 0.84357 0.92791 0.87577 0.90323 0.88958 0.91105 0.91667 0.92920 0.79836 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.69 16 2 O -0.36 -9.16 10.55 -51.39 -0.54 -9.70 16 3 C 0.47 15.35 7.10 71.24 0.51 15.85 16 4 O -0.54 -21.65 14.96 21.97 0.33 -21.32 16 5 C -0.09 -2.91 3.18 -10.82 -0.03 -2.94 16 6 H 0.12 3.44 7.60 -2.39 -0.02 3.43 16 7 C -0.10 -2.11 6.35 31.79 0.20 -1.91 16 8 C -0.11 -2.71 6.94 32.01 0.22 -2.49 16 9 C -0.14 -4.89 6.53 31.69 0.21 -4.69 16 10 C 0.17 6.92 3.15 45.73 0.14 7.06 16 11 H 0.05 2.22 6.35 -2.39 -0.02 2.20 16 12 N -0.74 -35.56 4.90 -319.44 -1.56 -37.13 16 13 C -0.23 -13.75 10.44 84.03 0.88 -12.88 16 14 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 15 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 16 N -0.99 -64.83 13.97 21.65 0.30 -64.53 16 17 Si 0.96 45.66 27.74 68.60 1.90 47.56 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 20 H -0.25 -10.50 6.52 99.48 0.65 -9.85 16 21 H 0.06 1.20 8.13 -2.39 -0.02 1.19 16 22 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 24 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 25 H 0.08 1.59 7.85 -2.38 -0.02 1.57 16 26 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 2.08 8.04 -2.39 -0.02 2.06 16 30 H 0.37 16.27 5.35 -92.71 -0.50 15.78 16 31 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -74.35 261.11 4.78 -69.57 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.56 Total: 19.35 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 3.79 Total: -3.81 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -1.26 Total: -101.65 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.21 Total: -31.02 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.56 kcal Total: -74.35 4.78 -69.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308503614.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.666 kcal (2) G-P(sol) polarization free energy of solvation -74.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds