Wall clock time and date at job start Sun Mar 29 2020 21:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46494 * 109.47091 * 2 1 4 4 C 1.37202 * 120.00375 * 264.53797 * 3 2 1 5 5 H 1.07996 * 119.99924 * 146.37928 * 4 3 2 6 6 C 1.38885 * 119.99497 * 326.39261 * 4 3 2 7 7 N 1.31467 * 120.00327 * 337.46361 * 6 4 3 8 8 Si 1.86798 * 119.99801 * 157.47317 * 6 4 3 9 9 H 1.48500 * 109.47484 * 59.99300 * 8 6 4 10 10 H 1.48505 * 109.47153 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47175 * 299.99147 * 8 6 4 12 12 C 1.34776 * 119.99869 * 84.53864 * 3 2 1 13 13 O 1.21512 * 120.00029 * 179.97438 * 12 3 2 14 14 O 1.34658 * 119.99994 * 0.02562 * 12 3 2 15 15 C 1.45206 * 116.99937 * 179.97438 * 14 12 3 16 16 C 1.53776 * 113.61484 * 149.99928 * 15 14 12 17 17 C 1.53784 * 87.08210 * 89.19911 * 16 15 14 18 18 C 1.53773 * 87.08168 * 25.43332 * 17 16 15 19 19 H 1.08996 * 109.47166 * 59.99429 * 1 2 3 20 20 H 1.08999 * 109.46833 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46749 * 299.99955 * 1 2 3 22 22 H 1.09004 * 109.46834 * 240.00464 * 2 1 3 23 23 H 1.08996 * 109.47166 * 120.00570 * 2 1 3 24 24 H 0.96998 * 120.00423 * 180.02562 * 7 6 4 25 25 H 1.08998 * 112.84809 * 18.80410 * 15 14 12 26 26 H 1.09009 * 113.61579 * 334.64946 * 16 15 14 27 27 H 1.09000 * 113.69398 * 203.75853 * 16 15 14 28 28 H 1.09000 * 113.61308 * 139.98160 * 17 16 15 29 29 H 1.08995 * 113.61211 * 270.88442 * 17 16 15 30 30 H 1.09004 * 113.61919 * 89.11178 * 18 17 16 31 31 H 1.09001 * 113.61499 * 220.02420 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3537 1.9903 -1.1828 5 1 2.1895 3.0501 -1.3099 6 6 2.9040 1.2438 -2.2166 7 7 3.5082 0.1056 -1.9563 8 14 2.7859 1.8573 -3.9770 9 1 3.4600 3.1758 -4.0881 10 1 3.4468 0.8858 -4.8852 11 1 1.3574 1.9981 -4.3574 12 6 2.1383 2.0535 1.1619 13 8 2.5437 3.1990 1.1620 14 8 1.8097 1.4555 2.3228 15 6 1.9645 2.2396 3.5352 16 6 0.9685 1.8621 4.6443 17 6 2.0069 0.8311 5.1174 18 6 3.0752 1.7251 4.4661 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.8929 -0.4155 -2.6783 25 1 2.0178 3.3110 3.3423 26 1 0.0476 1.4144 4.2704 27 1 0.7889 2.6621 5.3626 28 1 2.0943 0.7656 6.2019 29 1 1.9031 -0.1434 4.6404 30 1 3.4727 2.4885 5.1349 31 1 3.8551 1.1668 3.9482 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000322286790.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:57 Heat of formation + Delta-G solvation = -73.565742 kcal Electronic energy + Delta-G solvation = -14773.940819 eV Core-core repulsion = 12248.886087 eV Total energy + Delta-G solvation = -2525.054732 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.35609 -39.39281 -37.24190 -36.11822 -33.91402 -31.30523 -27.48370 -26.60992 -25.91271 -24.11947 -22.46854 -20.09467 -19.30163 -18.60781 -17.56826 -17.01480 -16.49939 -16.06363 -15.89384 -15.22236 -14.56957 -14.29089 -13.88167 -13.62086 -13.39798 -13.29940 -12.84739 -12.72579 -12.37082 -12.10840 -11.96548 -11.89696 -11.80206 -11.23049 -11.19760 -10.98149 -10.95834 -9.61394 -8.39588 -6.12545 1.39423 1.43085 1.51622 1.73904 2.09520 2.40624 2.97803 3.42830 3.66921 3.72137 3.92241 4.11831 4.34358 4.46386 4.61099 4.74158 4.77047 4.80420 5.00029 5.02319 5.03697 5.17734 5.21954 5.30776 5.42809 5.51454 5.75009 6.17249 6.41371 7.06498 7.31945 8.02526 8.65089 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049808 B = 0.008591 C = 0.008131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.025284 B = 3258.390139 C = 3442.880598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.106 3.894 3 N -0.435 5.435 4 C -0.339 4.339 5 H 0.072 0.928 6 C 0.002 3.998 7 N -0.889 5.889 8 Si 0.996 3.004 9 H -0.274 1.274 10 H -0.268 1.268 11 H -0.261 1.261 12 C 0.583 3.417 13 O -0.646 6.646 14 O -0.357 6.357 15 C 0.044 3.956 16 C -0.122 4.122 17 C -0.120 4.120 18 C -0.153 4.153 19 H 0.046 0.954 20 H 0.086 0.914 21 H 0.044 0.956 22 H 0.097 0.903 23 H 0.052 0.948 24 H 0.277 0.723 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.124 0.876 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.117 -2.465 8.563 10.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 N -0.161 5.161 4 C -0.465 4.465 5 H 0.089 0.911 6 C -0.200 4.200 7 N -0.526 5.526 8 Si 0.818 3.182 9 H -0.200 1.200 10 H -0.193 1.193 11 H -0.185 1.185 12 C 0.339 3.661 13 O -0.543 6.543 14 O -0.271 6.271 15 C -0.012 4.012 16 C -0.159 4.159 17 C -0.158 4.158 18 C -0.190 4.190 19 H 0.065 0.935 20 H 0.105 0.895 21 H 0.063 0.937 22 H 0.115 0.885 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.142 0.858 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.913 -2.334 8.531 10.118 hybrid contribution 0.387 0.492 -0.868 1.070 sum -4.526 -1.843 7.663 9.088 Atomic orbital electron populations 1.22017 0.95161 1.02438 1.00946 1.21624 0.94294 0.82548 1.03266 1.42786 1.58456 1.13558 1.01322 1.19447 1.43226 0.95394 0.88479 0.91062 1.26252 0.92843 0.96598 1.04337 1.70036 1.31963 1.15848 1.34745 0.84985 0.79261 0.78092 0.75907 1.19968 1.19275 1.18545 1.18960 0.80249 0.84957 0.81978 1.90710 1.56450 1.20129 1.86982 1.86210 1.81806 1.44940 1.14164 1.23889 1.00778 0.95056 0.81503 1.23218 0.97276 1.00548 0.94896 1.22760 0.94164 0.97156 1.01671 1.23425 0.96807 1.00869 0.97932 0.93506 0.89530 0.93712 0.88524 0.92941 0.91290 0.91362 0.90665 0.85763 0.88123 0.90804 0.86609 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.68 10.20 71.98 0.73 -4.95 16 2 C 0.11 5.01 5.62 86.38 0.49 5.50 16 3 N -0.43 -24.21 2.56 -764.68 -1.96 -26.17 16 4 C -0.34 -19.86 8.98 84.01 0.75 -19.11 16 5 H 0.07 4.39 7.70 -2.91 -0.02 4.37 16 6 C 0.00 0.13 4.92 84.90 0.42 0.54 16 7 N -0.89 -48.60 11.34 21.65 0.25 -48.35 16 8 Si 1.00 42.18 29.61 68.60 2.03 44.21 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 11 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 12 C 0.58 32.47 8.31 129.79 1.08 33.55 16 13 O -0.65 -39.79 15.38 19.80 0.30 -39.48 16 14 O -0.36 -16.48 9.10 -55.67 -0.51 -16.99 16 15 C 0.04 1.63 4.31 31.12 0.13 1.77 16 16 C -0.12 -3.09 7.92 31.12 0.25 -2.85 16 17 C -0.12 -2.84 8.03 31.12 0.25 -2.59 16 18 C -0.15 -4.53 7.92 31.12 0.25 -4.29 16 19 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 20 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 21 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.10 4.89 5.34 -2.39 -0.01 4.88 16 23 H 0.05 2.41 7.56 -2.39 -0.02 2.39 16 24 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 25 H 0.07 2.79 7.07 -2.39 -0.02 2.78 16 26 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.12 2.76 8.14 -2.38 -0.02 2.74 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -69.45 264.77 5.57 -63.89 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.11 Total: 15.32 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 4.35 Total: 7.57 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -1.71 Total: -74.52 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -0.20 Total: -56.47 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -69.45 5.57 -63.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322286790.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.680 kcal (2) G-P(sol) polarization free energy of solvation -69.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds