Wall clock time and date at job start Sun Mar 29 2020 21:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.34771 * 120.00694 * 84.99510 * 12 2 1 14 14 O 1.21517 * 119.99576 * 0.02562 * 13 12 2 15 15 O 1.34640 * 120.00426 * 180.02562 * 13 12 2 16 16 C 1.45196 * 116.99810 * 180.02562 * 15 13 12 17 17 C 1.53777 * 113.61490 * 249.13605 * 16 15 13 18 18 C 1.53954 * 87.02055 * 220.05012 * 17 16 15 19 19 C 1.53784 * 87.11275 * 25.36299 * 18 17 16 20 20 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 24 24 H 0.97006 * 119.99940 * 265.00592 * 12 2 1 25 25 H 1.09009 * 112.85480 * 20.33600 * 16 15 13 26 26 H 1.09001 * 113.61508 * 334.56813 * 17 16 15 27 27 H 1.09004 * 113.61829 * 105.47269 * 17 16 15 28 28 H 1.09004 * 113.53969 * 270.80756 * 18 17 16 29 29 H 1.09002 * 113.66768 * 139.93104 * 18 17 16 30 30 H 1.08996 * 113.61223 * 220.09145 * 19 18 17 31 31 H 1.08996 * 113.68763 * 89.19474 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 7 2.0183 -0.6904 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8584 1.1610 -2.4116 15 8 2.5953 -0.6529 -3.4567 16 6 2.7092 0.1340 -4.6716 17 6 1.6882 -0.2533 -5.7543 18 6 2.8233 -0.0670 -6.7777 19 6 3.8020 -0.3678 -5.6303 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.7006 1.1552 3.4844 24 1 2.2490 -1.6317 -1.1528 25 1 2.7560 1.2059 -4.4790 26 1 1.3365 -1.2819 -5.6749 27 1 0.8762 0.4653 -5.8659 28 1 2.9003 0.9501 -7.1620 29 1 2.8298 -0.8199 -7.5658 30 1 4.6940 0.2585 -5.6418 31 1 4.0302 -1.4275 -5.5159 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000322312908.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:53 Heat of formation + Delta-G solvation = -71.346095 kcal Electronic energy + Delta-G solvation = -14211.273867 eV Core-core repulsion = 11686.315386 eV Total energy + Delta-G solvation = -2524.958481 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.94847 -38.09019 -35.51170 -34.50700 -32.37819 -28.90829 -25.72038 -25.33204 -25.08055 -21.84962 -19.81943 -19.60308 -18.49205 -16.42892 -16.09337 -15.55484 -15.17999 -14.91915 -14.12014 -13.45442 -12.81981 -12.51652 -12.43886 -11.97103 -11.75334 -11.51178 -11.11128 -11.05867 -10.91942 -10.73355 -10.45008 -10.31407 -10.24301 -9.87528 -9.68577 -9.07763 -8.57771 -8.00260 -6.14260 -4.23503 2.99034 3.25337 3.31897 3.34878 3.64550 4.32392 4.50499 4.53326 4.82252 4.85036 5.16460 5.20472 5.57106 5.60399 5.68633 5.76783 5.89868 6.04967 6.21119 6.76932 6.93538 7.00960 7.12773 7.42946 7.54499 7.69298 7.88721 8.11957 8.62398 8.76884 9.23754 9.45274 10.92027 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.071408 B = 0.006136 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.018059 B = 4562.424642 C = 4757.360015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.279 3.721 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.688 5.688 13 C 0.633 3.367 14 O -0.586 6.586 15 O -0.370 6.370 16 C 0.080 3.920 17 C -0.152 4.152 18 C -0.139 4.139 19 C -0.135 4.135 20 H 0.028 0.972 21 H 0.093 0.907 22 H 0.016 0.984 23 H 0.265 0.735 24 H 0.395 0.605 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 -3.565 -13.016 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.179 3.821 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.343 5.343 13 C 0.384 3.616 14 O -0.476 6.476 15 O -0.285 6.285 16 C 0.023 3.977 17 C -0.190 4.190 18 C -0.176 4.176 19 C -0.172 4.172 20 H 0.048 0.952 21 H 0.112 0.888 22 H 0.035 0.965 23 H 0.075 0.925 24 H 0.228 0.772 25 H 0.128 0.872 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.694 -2.837 -12.928 13.507 hybrid contribution 0.327 -0.756 0.879 1.205 sum 3.021 -3.594 -12.049 12.931 Atomic orbital electron populations 1.22128 0.98271 0.99374 1.01075 1.18826 0.91082 0.93822 0.78411 0.93135 1.21199 1.32551 1.13489 0.90020 0.91814 1.24879 0.94739 0.94997 0.99053 1.69901 1.35705 1.22506 1.24004 0.86385 0.78557 0.79855 0.81927 1.20512 1.21034 1.19778 1.45572 1.67413 1.13942 1.07397 1.18459 0.77466 0.84297 0.81340 1.90910 1.56594 1.15197 1.84933 1.86336 1.80085 1.43399 1.18650 1.24291 0.96896 0.96942 0.79546 1.23464 0.97549 1.02961 0.94998 1.22659 0.96431 1.02258 0.96298 1.23241 0.97189 1.02787 0.94010 0.95237 0.88836 0.96533 0.92480 0.77239 0.87204 0.89174 0.90793 0.89777 0.90530 0.90675 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.26 37.16 0.34 -3.45 16 2 C 0.28 7.29 2.56 -69.08 -0.18 7.12 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.53 -14.33 8.73 -34.44 -0.30 -14.63 16 5 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.90 11.31 55.43 0.63 -24.27 16 8 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 12 N -0.69 -15.50 5.07 -59.86 -0.30 -15.81 16 13 C 0.63 14.10 8.71 54.05 0.47 14.57 16 14 O -0.59 -14.78 15.24 -19.28 -0.29 -15.07 16 15 O -0.37 -6.86 10.29 -40.32 -0.41 -7.28 16 16 C 0.08 1.20 4.23 -25.92 -0.11 1.09 16 17 C -0.15 -1.86 7.94 -25.83 -0.20 -2.07 16 18 C -0.14 -1.32 8.09 -25.83 -0.21 -1.53 16 19 C -0.13 -1.51 7.93 -25.91 -0.21 -1.72 16 20 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.09 2.54 6.06 -51.93 -0.31 2.22 16 22 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.39 7.89 8.65 -40.82 -0.35 7.54 16 25 H 0.11 1.80 7.11 -51.92 -0.37 1.43 16 26 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 266.09 15.07 4.01 4.01 Total: -1.00 -30.13 266.09 -6.24 -36.37 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.35 Total: 5.32 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -0.49 Total: 1.08 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.32 Total: -40.08 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.71 Total: -22.35 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.13 -6.24 -36.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322312908.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.976 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds