Wall clock time and date at job start Sun Mar 29 2020 21:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.34771 * 120.00694 * 84.99510 * 12 2 1 14 14 O 1.21517 * 119.99576 * 0.02562 * 13 12 2 15 15 O 1.34640 * 120.00426 * 180.02562 * 13 12 2 16 16 C 1.45196 * 116.99810 * 180.02562 * 15 13 12 17 17 C 1.53777 * 113.61490 * 249.13605 * 16 15 13 18 18 C 1.53954 * 87.02055 * 220.05012 * 17 16 15 19 19 C 1.53784 * 87.11275 * 25.36299 * 18 17 16 20 20 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 24 24 H 0.97006 * 119.99940 * 265.00592 * 12 2 1 25 25 H 1.09009 * 112.85480 * 20.33600 * 16 15 13 26 26 H 1.09001 * 113.61508 * 334.56813 * 17 16 15 27 27 H 1.09004 * 113.61829 * 105.47269 * 17 16 15 28 28 H 1.09004 * 113.53969 * 270.80756 * 18 17 16 29 29 H 1.09002 * 113.66768 * 139.93104 * 18 17 16 30 30 H 1.08996 * 113.61223 * 220.09145 * 19 18 17 31 31 H 1.08996 * 113.68763 * 89.19474 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 7 2.0183 -0.6904 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8584 1.1610 -2.4116 15 8 2.5953 -0.6529 -3.4567 16 6 2.7092 0.1340 -4.6716 17 6 1.6882 -0.2533 -5.7543 18 6 2.8233 -0.0670 -6.7777 19 6 3.8020 -0.3678 -5.6303 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.7006 1.1552 3.4844 24 1 2.2490 -1.6317 -1.1528 25 1 2.7560 1.2059 -4.4790 26 1 1.3365 -1.2819 -5.6749 27 1 0.8762 0.4653 -5.8659 28 1 2.9003 0.9501 -7.1620 29 1 2.8298 -0.8199 -7.5658 30 1 4.6940 0.2585 -5.6418 31 1 4.0302 -1.4275 -5.5159 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000322312908.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:53 Heat of formation + Delta-G solvation = -91.491198 kcal Electronic energy + Delta-G solvation = -14212.147424 eV Core-core repulsion = 11686.315386 eV Total energy + Delta-G solvation = -2525.832038 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.51225 -39.41808 -37.17519 -36.30892 -34.38105 -30.90757 -27.38420 -26.66302 -26.28585 -23.61839 -21.71432 -20.64180 -20.23692 -18.15054 -17.88199 -17.10345 -16.89606 -16.22524 -15.70528 -15.15615 -14.53023 -14.20822 -13.69906 -13.42559 -13.22543 -13.04394 -12.91747 -12.78310 -12.44116 -12.29618 -12.14226 -12.04287 -11.56263 -11.41059 -11.16842 -11.04936 -10.63054 -9.93942 -8.19892 -6.37754 1.37549 1.47511 1.49347 1.59623 1.86788 2.41998 3.10985 3.42362 3.57626 3.62859 3.85942 3.94643 4.39926 4.69749 4.74812 4.77374 4.88410 4.96657 5.00357 5.03043 5.07994 5.17202 5.38579 5.51281 5.61400 5.68694 5.82629 6.04266 6.67421 6.79262 7.29900 7.53590 8.87043 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.071408 B = 0.006136 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.018059 B = 4562.424642 C = 4757.360015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.285 3.715 3 H 0.005 0.995 4 C -0.550 4.550 5 H 0.075 0.925 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.978 3.022 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.260 1.260 12 N -0.684 5.684 13 C 0.635 3.365 14 O -0.621 6.621 15 O -0.362 6.362 16 C 0.047 3.953 17 C -0.152 4.152 18 C -0.119 4.119 19 C -0.125 4.125 20 H 0.043 0.957 21 H 0.073 0.927 22 H 0.013 0.987 23 H 0.268 0.732 24 H 0.409 0.591 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.737 -5.199 -13.861 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.184 3.816 3 H 0.023 0.977 4 C -0.588 4.588 5 H 0.093 0.907 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.802 3.198 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.184 1.184 12 N -0.341 5.341 13 C 0.388 3.612 14 O -0.514 6.514 15 O -0.276 6.276 16 C -0.008 4.008 17 C -0.190 4.190 18 C -0.157 4.157 19 C -0.162 4.162 20 H 0.062 0.938 21 H 0.092 0.908 22 H 0.032 0.968 23 H 0.077 0.923 24 H 0.244 0.756 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.523 -4.505 -13.818 14.955 hybrid contribution 0.083 -0.202 1.043 1.066 sum 3.606 -4.707 -12.775 14.084 Atomic orbital electron populations 1.21954 0.97831 0.99827 0.99924 1.18485 0.91380 0.91860 0.79924 0.97745 1.21488 1.32979 1.13927 0.90417 0.90709 1.25798 0.94683 0.95601 1.02254 1.70039 1.36635 1.23872 1.24879 0.85259 0.77789 0.79091 0.77668 1.20269 1.20723 1.18431 1.45258 1.67491 1.14444 1.06881 1.18493 0.76902 0.83774 0.82039 1.90882 1.57983 1.16870 1.85676 1.86353 1.79284 1.43432 1.18566 1.24946 1.00985 0.96117 0.78754 1.23525 0.97842 1.03013 0.94622 1.22650 0.93412 1.03878 0.95726 1.23290 0.96884 1.03315 0.92710 0.93806 0.90786 0.96808 0.92302 0.75609 0.89181 0.88750 0.91151 0.88547 0.87915 0.89532 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.04 9.26 71.98 0.67 -6.37 16 2 C 0.29 15.23 2.56 44.24 0.11 15.34 16 3 H 0.00 0.29 7.58 -2.38 -0.02 0.27 16 4 C -0.55 -29.45 8.73 25.60 0.22 -29.23 16 5 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -52.26 11.31 21.45 0.24 -52.02 16 8 Si 0.98 41.82 29.54 68.60 2.03 43.85 16 9 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 12 N -0.68 -31.01 5.07 -573.72 -2.91 -33.93 16 13 C 0.64 28.70 8.71 129.79 1.13 29.83 16 14 O -0.62 -32.36 15.24 19.79 0.30 -32.05 16 15 O -0.36 -13.30 10.29 -55.49 -0.57 -13.87 16 16 C 0.05 1.39 4.23 31.12 0.13 1.53 16 17 C -0.15 -3.48 7.94 31.18 0.25 -3.23 16 18 C -0.12 -1.90 8.09 31.18 0.25 -1.64 16 19 C -0.12 -2.49 7.93 31.12 0.25 -2.24 16 20 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 21 H 0.07 4.11 6.06 -2.38 -0.01 4.10 16 22 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 23 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 24 H 0.41 16.07 8.65 -92.70 -0.80 15.27 16 25 H 0.09 3.01 7.11 -2.38 -0.02 2.99 16 26 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -65.31 266.09 2.87 -62.44 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.32 Total: 20.24 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 3.46 Total: 5.34 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -2.67 Total: -85.95 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -0.27 Total: -45.92 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -65.31 2.87 -62.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322312908.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.047 kcal (2) G-P(sol) polarization free energy of solvation -65.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds