Wall clock time and date at job start Sun Mar 29 2020 22:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47468 * 2 1 4 4 C 1.53000 * 109.47023 * 119.99995 * 2 1 3 5 5 C 1.52999 * 109.47508 * 174.52326 * 4 2 1 6 6 H 1.09001 * 109.67627 * 51.36560 * 5 4 2 7 7 C 1.53292 * 109.68503 * 171.88460 * 5 4 2 8 8 O 1.42962 * 109.22520 * 172.06447 * 7 5 4 9 9 C 1.42961 * 114.16585 * 297.41959 * 8 7 5 10 10 C 1.53300 * 109.22177 * 62.58063 * 9 8 7 11 11 N 1.47147 * 108.38347 * 307.69441 * 10 9 8 12 12 C 1.36935 * 120.98467 * 230.51219 * 11 10 9 13 13 H 1.08005 * 119.99926 * 148.99347 * 12 11 10 14 14 C 1.38806 * 120.00018 * 328.99640 * 12 11 10 15 15 N 1.31618 * 119.99945 * 350.63071 * 14 12 11 16 16 Si 1.86803 * 120.00108 * 170.63088 * 14 12 11 17 17 H 1.48494 * 109.47327 * 89.99924 * 16 14 12 18 18 H 1.48501 * 109.47133 * 210.00045 * 16 14 12 19 19 H 1.48504 * 109.47040 * 329.99923 * 16 14 12 20 20 H 1.08997 * 109.46927 * 300.00151 * 1 2 3 21 21 H 1.09003 * 109.46818 * 59.99802 * 1 2 3 22 22 H 1.08995 * 109.47599 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47354 * 240.00174 * 2 1 3 24 24 H 1.08993 * 109.47244 * 299.99780 * 3 2 1 25 25 H 1.09007 * 109.47200 * 59.99955 * 3 2 1 26 26 H 1.09002 * 109.47317 * 179.97438 * 3 2 1 27 27 H 1.09007 * 109.47110 * 54.52378 * 4 2 1 28 28 H 1.08996 * 109.47167 * 294.52714 * 4 2 1 29 29 H 1.09001 * 109.51284 * 52.13725 * 7 5 4 30 30 H 1.08999 * 109.55479 * 292.01466 * 7 5 4 31 31 H 1.08999 * 109.51424 * 182.49970 * 9 8 7 32 32 H 1.08998 * 109.51462 * 302.65866 * 9 8 7 33 33 H 1.08994 * 109.67945 * 67.41962 * 10 9 8 34 34 H 1.08997 * 109.67764 * 187.97689 * 10 9 8 35 35 H 0.97008 * 119.99844 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5637 -0.8416 1.1824 6 1 4.0005 0.1360 0.9785 7 6 4.0983 -1.3781 2.5152 8 8 5.4932 -1.6616 2.3831 9 6 5.7958 -2.6763 1.4226 10 6 5.3482 -2.2063 0.0338 11 7 3.9409 -1.7848 0.1177 12 6 3.0099 -2.2559 -0.7690 13 1 1.9824 -2.3781 -0.4592 14 6 3.3865 -2.5765 -2.0660 15 7 4.5875 -2.2579 -2.5003 16 14 2.1890 -3.4601 -3.1950 17 1 1.3828 -2.4607 -3.9410 18 1 2.9448 -4.3032 -4.1559 19 1 1.2874 -4.3188 -2.3857 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6768 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4424 0.0005 27 1 1.5987 -1.7168 1.2996 28 1 1.7588 -0.1540 2.1365 29 1 3.5648 -2.2908 2.7806 30 1 3.9509 -0.6306 3.2948 31 1 6.8698 -2.8622 1.4154 32 1 5.2685 -3.5938 1.6839 33 1 5.9647 -1.3662 -0.2857 34 1 5.4443 -3.0250 -0.6793 35 1 4.8505 -2.4816 -3.4068 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334254754.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:37 Heat of formation + Delta-G solvation = -35.554687 kcal Electronic energy + Delta-G solvation = -15601.361504 eV Core-core repulsion = 13213.788149 eV Total energy + Delta-G solvation = -2387.573355 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.57944 -36.09144 -33.85078 -31.45427 -30.28377 -27.10009 -26.53831 -25.69725 -23.30545 -21.72412 -19.62926 -19.01140 -16.65631 -15.58670 -15.28183 -14.48185 -14.29162 -13.87817 -13.62767 -13.37579 -12.87696 -12.48416 -12.32573 -11.70040 -11.42330 -11.21373 -10.98727 -10.79809 -10.74571 -10.49607 -10.24244 -10.03397 -9.93381 -9.80582 -9.65483 -9.44632 -8.74307 -8.39584 -6.54775 -5.78143 -3.24952 3.34635 3.42252 3.42794 4.44247 4.66038 5.31834 5.34955 5.54406 5.69274 5.72506 5.90857 6.02887 6.09972 6.14422 6.24062 6.25268 6.33309 6.38443 6.44500 6.45588 6.52709 6.61314 6.69562 6.88954 6.96404 7.13913 7.27318 7.51404 7.62229 7.78357 8.00699 8.43479 9.19225 9.81021 10.41616 11.28858 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020900 B = 0.016527 C = 0.010508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.365874 B = 1693.749137 C = 2663.914664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.139 4.139 4 C -0.096 4.096 5 C 0.136 3.864 6 H 0.037 0.963 7 C 0.051 3.949 8 O -0.398 6.398 9 C 0.036 3.964 10 C 0.143 3.857 11 N -0.590 5.590 12 C -0.242 4.242 13 H 0.073 0.927 14 C 0.003 3.997 15 N -0.904 5.904 16 Si 0.897 3.103 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.279 1.279 20 H 0.040 0.960 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.120 0.880 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.026 0.974 34 H 0.093 0.907 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.375 2.187 5.949 7.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C -0.196 4.196 4 C -0.134 4.134 5 C 0.030 3.970 6 H 0.055 0.945 7 C -0.027 4.027 8 O -0.316 6.316 9 C -0.042 4.042 10 C 0.018 3.982 11 N -0.315 5.315 12 C -0.371 4.371 13 H 0.090 0.910 14 C -0.196 4.196 15 N -0.548 5.548 16 Si 0.727 3.273 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.204 1.204 20 H 0.059 0.941 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.138 0.862 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.111 0.889 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.174 2.245 5.880 7.049 hybrid contribution -0.749 -0.558 -0.848 1.262 sum -3.923 1.687 5.032 6.600 Atomic orbital electron populations 1.21807 0.97079 1.00820 1.00139 1.21517 0.93701 0.95854 1.02069 1.21800 1.01440 0.96675 0.99664 1.21481 0.95304 0.99990 0.96620 1.21220 0.93609 0.93226 0.88954 0.94537 1.23042 0.82477 0.99071 0.98150 1.87765 1.24114 1.58856 1.60909 1.23336 0.99125 0.89863 0.91879 1.21402 0.84878 0.99679 0.92284 1.44064 1.05380 1.49160 1.32884 1.19107 0.91706 1.36568 0.89744 0.90964 1.25165 0.96910 1.00842 0.96646 1.69968 1.18937 1.49201 1.16720 0.86371 0.80549 0.79512 0.80885 1.21245 1.21620 1.20447 0.94094 0.93614 0.93243 0.86227 0.93894 0.94382 0.92470 0.91919 0.93661 0.94088 0.90540 0.90476 0.94334 0.95593 0.88919 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.19 37.16 0.34 -1.93 16 2 C -0.11 -2.14 2.36 -90.62 -0.21 -2.35 16 3 C -0.14 -2.41 8.97 37.16 0.33 -2.08 16 4 C -0.10 -1.79 3.67 -26.73 -0.10 -1.89 16 5 C 0.14 2.88 3.01 -67.42 -0.20 2.67 16 6 H 0.04 0.83 6.24 -51.93 -0.32 0.50 16 7 C 0.05 0.98 6.28 37.31 0.23 1.22 16 8 O -0.40 -8.34 10.74 -35.23 -0.38 -8.72 16 9 C 0.04 0.74 6.99 37.31 0.26 1.00 16 10 C 0.14 3.47 5.38 -3.53 -0.02 3.45 16 11 N -0.59 -14.47 3.04 -164.30 -0.50 -14.97 16 12 C -0.24 -6.25 6.49 -15.06 -0.10 -6.35 16 13 H 0.07 1.83 5.57 -52.48 -0.29 1.54 16 14 C 0.00 0.08 5.09 -17.43 -0.09 -0.01 16 15 N -0.90 -25.57 11.04 55.49 0.61 -24.95 16 16 Si 0.90 21.17 29.56 -169.99 -5.03 16.15 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.12 2.75 5.09 -51.93 -0.26 2.48 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.08 6.41 -51.93 -0.33 0.75 16 27 H 0.06 1.22 7.03 -51.92 -0.37 0.86 16 28 H 0.04 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 2.43 6.27 -51.93 -0.33 2.11 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 267.60 15.07 4.03 4.03 Total: -1.00 -27.96 267.60 -6.50 -34.46 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.69 Total: 0.28 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 0.45 Total: -6.27 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.11 Total: -39.92 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.38 Total: -8.72 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.96 -6.50 -34.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334254754.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.099 kcal (2) G-P(sol) polarization free energy of solvation -27.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds