Wall clock time and date at job start Sun Mar 29 2020 22:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47468 * 2 1 4 4 C 1.53000 * 109.47023 * 119.99995 * 2 1 3 5 5 C 1.52999 * 109.47508 * 174.52326 * 4 2 1 6 6 H 1.09001 * 109.67627 * 51.36560 * 5 4 2 7 7 C 1.53292 * 109.68503 * 171.88460 * 5 4 2 8 8 O 1.42962 * 109.22520 * 172.06447 * 7 5 4 9 9 C 1.42961 * 114.16585 * 297.41959 * 8 7 5 10 10 C 1.53300 * 109.22177 * 62.58063 * 9 8 7 11 11 N 1.47147 * 108.38347 * 307.69441 * 10 9 8 12 12 C 1.36935 * 120.98467 * 230.51219 * 11 10 9 13 13 H 1.08005 * 119.99926 * 148.99347 * 12 11 10 14 14 C 1.38806 * 120.00018 * 328.99640 * 12 11 10 15 15 N 1.31618 * 119.99945 * 350.63071 * 14 12 11 16 16 Si 1.86803 * 120.00108 * 170.63088 * 14 12 11 17 17 H 1.48494 * 109.47327 * 89.99924 * 16 14 12 18 18 H 1.48501 * 109.47133 * 210.00045 * 16 14 12 19 19 H 1.48504 * 109.47040 * 329.99923 * 16 14 12 20 20 H 1.08997 * 109.46927 * 300.00151 * 1 2 3 21 21 H 1.09003 * 109.46818 * 59.99802 * 1 2 3 22 22 H 1.08995 * 109.47599 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47354 * 240.00174 * 2 1 3 24 24 H 1.08993 * 109.47244 * 299.99780 * 3 2 1 25 25 H 1.09007 * 109.47200 * 59.99955 * 3 2 1 26 26 H 1.09002 * 109.47317 * 179.97438 * 3 2 1 27 27 H 1.09007 * 109.47110 * 54.52378 * 4 2 1 28 28 H 1.08996 * 109.47167 * 294.52714 * 4 2 1 29 29 H 1.09001 * 109.51284 * 52.13725 * 7 5 4 30 30 H 1.08999 * 109.55479 * 292.01466 * 7 5 4 31 31 H 1.08999 * 109.51424 * 182.49970 * 9 8 7 32 32 H 1.08998 * 109.51462 * 302.65866 * 9 8 7 33 33 H 1.08994 * 109.67945 * 67.41962 * 10 9 8 34 34 H 1.08997 * 109.67764 * 187.97689 * 10 9 8 35 35 H 0.97008 * 119.99844 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5637 -0.8416 1.1824 6 1 4.0005 0.1360 0.9785 7 6 4.0983 -1.3781 2.5152 8 8 5.4932 -1.6616 2.3831 9 6 5.7958 -2.6763 1.4226 10 6 5.3482 -2.2063 0.0338 11 7 3.9409 -1.7848 0.1177 12 6 3.0099 -2.2559 -0.7690 13 1 1.9824 -2.3781 -0.4592 14 6 3.3865 -2.5765 -2.0660 15 7 4.5875 -2.2579 -2.5003 16 14 2.1890 -3.4601 -3.1950 17 1 1.3828 -2.4607 -3.9410 18 1 2.9448 -4.3032 -4.1559 19 1 1.2874 -4.3188 -2.3857 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6768 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4424 0.0005 27 1 1.5987 -1.7168 1.2996 28 1 1.7588 -0.1540 2.1365 29 1 3.5648 -2.2908 2.7806 30 1 3.9509 -0.6306 3.2948 31 1 6.8698 -2.8622 1.4154 32 1 5.2685 -3.5938 1.6839 33 1 5.9647 -1.3662 -0.2857 34 1 5.4443 -3.0250 -0.6793 35 1 4.8505 -2.4816 -3.4068 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334254754.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:36 Heat of formation + Delta-G solvation = -52.627956 kcal Electronic energy + Delta-G solvation = -15602.101856 eV Core-core repulsion = 13213.788149 eV Total energy + Delta-G solvation = -2388.313707 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26879 -37.65884 -35.66111 -33.24385 -32.06127 -28.95475 -27.91223 -27.24840 -25.16620 -23.43329 -21.36158 -20.56687 -18.55656 -17.36071 -16.92327 -16.22194 -15.98136 -15.60520 -15.27513 -14.93694 -14.69131 -14.06572 -13.98517 -13.03913 -12.97179 -12.92669 -12.73466 -12.51173 -12.38800 -12.15251 -12.09186 -11.78452 -11.65291 -11.34981 -11.28271 -11.08221 -10.45046 -10.36840 -8.51929 -7.80419 -5.29479 1.45675 1.47440 1.55022 2.50780 3.06601 3.34163 3.56464 4.01105 4.23760 4.28923 4.36450 4.47292 4.51364 4.63934 4.70386 4.76417 4.85318 4.89893 4.95566 5.04287 5.08297 5.10503 5.20535 5.23236 5.42206 5.54004 5.61882 5.67294 5.76497 5.94801 6.34806 6.44424 7.17465 7.85778 8.42254 9.25243 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020900 B = 0.016527 C = 0.010508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.365874 B = 1693.749137 C = 2663.914664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.116 4.116 3 C -0.132 4.132 4 C -0.089 4.089 5 C 0.130 3.870 6 H 0.021 0.979 7 C 0.052 3.948 8 O -0.405 6.405 9 C 0.049 3.951 10 C 0.148 3.852 11 N -0.606 5.606 12 C -0.228 4.228 13 H 0.079 0.921 14 C -0.053 4.053 15 N -0.940 5.940 16 Si 0.954 3.046 17 H -0.286 1.286 18 H -0.298 1.298 19 H -0.268 1.268 20 H 0.066 0.934 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.073 0.927 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.045 0.955 33 H -0.005 1.005 34 H 0.066 0.934 35 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 2.482 7.789 9.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 C -0.190 4.190 4 C -0.126 4.126 5 C 0.024 3.976 6 H 0.039 0.961 7 C -0.026 4.026 8 O -0.324 6.324 9 C -0.029 4.029 10 C 0.022 3.978 11 N -0.331 5.331 12 C -0.358 4.358 13 H 0.096 0.904 14 C -0.247 4.247 15 N -0.587 5.587 16 Si 0.783 3.217 17 H -0.213 1.213 18 H -0.225 1.225 19 H -0.193 1.193 20 H 0.085 0.915 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.063 0.937 33 H 0.013 0.987 34 H 0.085 0.915 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.750 2.542 7.751 9.439 hybrid contribution -0.275 -0.573 -1.370 1.510 sum -5.025 1.969 6.381 8.357 Atomic orbital electron populations 1.21733 0.94629 1.01175 1.01658 1.21399 0.95797 0.96110 1.00079 1.21729 0.99769 0.96197 1.01272 1.21444 0.93185 1.00069 0.97942 1.21433 0.95530 0.91767 0.88848 0.96134 1.23165 0.81486 1.00242 0.97666 1.87763 1.25317 1.58860 1.60435 1.23183 1.00678 0.89763 0.89299 1.21222 0.84856 0.97640 0.94120 1.44356 1.05165 1.50087 1.33490 1.19357 0.92059 1.34666 0.89765 0.90354 1.25813 0.98266 1.02491 0.98142 1.70134 1.20696 1.51335 1.16575 0.85459 0.78757 0.78370 0.79114 1.21319 1.22451 1.19295 0.91525 0.93162 0.93500 0.90877 0.93516 0.91522 0.94970 0.92755 0.90194 0.93475 0.87085 0.88001 0.93693 0.98657 0.91519 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.19 71.98 0.66 -3.29 16 2 C -0.12 -4.17 2.36 -10.80 -0.03 -4.19 16 3 C -0.13 -4.39 8.97 71.98 0.65 -3.74 16 4 C -0.09 -3.10 3.67 30.59 0.11 -2.98 16 5 C 0.13 5.32 3.01 44.96 0.14 5.45 16 6 H 0.02 0.93 6.24 -2.39 -0.01 0.92 16 7 C 0.05 1.86 6.28 72.08 0.45 2.31 16 8 O -0.40 -16.14 10.74 -148.98 -1.60 -17.74 16 9 C 0.05 1.95 6.99 72.08 0.50 2.45 16 10 C 0.15 7.30 5.38 86.36 0.46 7.76 16 11 N -0.61 -29.90 3.04 -673.74 -2.05 -31.95 16 12 C -0.23 -11.89 6.49 84.03 0.55 -11.35 16 13 H 0.08 3.93 5.57 -2.91 -0.02 3.92 16 14 C -0.05 -2.87 5.09 84.86 0.43 -2.44 16 15 N -0.94 -55.22 11.04 21.65 0.24 -54.98 16 16 Si 0.95 44.27 29.56 68.60 2.03 46.30 16 17 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.07 3.36 5.09 -2.39 -0.01 3.35 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.03 1.20 6.41 -2.39 -0.02 1.18 16 27 H 0.05 1.99 7.03 -2.38 -0.02 1.97 16 28 H 0.08 2.25 8.13 -2.39 -0.02 2.23 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.07 3.63 6.27 -2.39 -0.01 3.62 16 35 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 Total: -1.00 -60.93 267.60 3.59 -57.34 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.05 Total: 11.05 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 3.93 Total: -10.02 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -1.81 Total: -86.93 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -1.60 Total: -17.74 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -60.93 3.59 -57.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334254754.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.712 kcal (2) G-P(sol) polarization free energy of solvation -60.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds