Wall clock time and date at job start Sun Mar 29 2020 22:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47244 * 2 1 4 4 C 1.53005 * 109.47159 * 120.00400 * 2 1 3 5 5 C 1.52993 * 109.47033 * 174.87183 * 4 2 1 6 6 H 1.09007 * 109.68048 * 53.95456 * 5 4 2 7 7 C 1.53298 * 109.71416 * 293.42249 * 5 4 2 8 8 O 1.42964 * 109.22607 * 187.95867 * 7 5 4 9 9 C 1.42969 * 114.16557 * 62.57460 * 8 7 5 10 10 C 1.53291 * 109.22250 * 297.42462 * 9 8 7 11 11 N 1.47145 * 108.38867 * 52.30120 * 10 9 8 12 12 C 1.36942 * 120.98067 * 129.48444 * 11 10 9 13 13 H 1.08009 * 119.99691 * 208.45139 * 12 11 10 14 14 C 1.38807 * 120.00229 * 28.45560 * 12 11 10 15 15 N 1.31617 * 119.99990 * 11.23452 * 14 12 11 16 16 Si 1.86795 * 119.99949 * 191.23720 * 14 12 11 17 17 H 1.48502 * 109.47484 * 59.99890 * 16 14 12 18 18 H 1.48503 * 109.46939 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47212 * 299.99446 * 16 14 12 20 20 H 1.09003 * 109.46858 * 299.99510 * 1 2 3 21 21 H 1.09002 * 109.47078 * 59.99816 * 1 2 3 22 22 H 1.09003 * 109.47208 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46505 * 240.00217 * 2 1 3 24 24 H 1.09000 * 109.47540 * 298.86387 * 3 2 1 25 25 H 1.09003 * 109.46907 * 58.86549 * 3 2 1 26 26 H 1.09001 * 109.46935 * 178.85756 * 3 2 1 27 27 H 1.09000 * 109.47153 * 54.86945 * 4 2 1 28 28 H 1.08993 * 109.46745 * 294.87366 * 4 2 1 29 29 H 1.09001 * 109.51528 * 68.03040 * 7 5 4 30 30 H 1.09004 * 109.50747 * 307.88104 * 7 5 4 31 31 H 1.08997 * 109.51177 * 57.34657 * 9 8 7 32 32 H 1.08997 * 109.50687 * 177.44528 * 9 8 7 33 33 H 1.09007 * 109.68232 * 172.02673 * 10 9 8 34 34 H 1.09003 * 109.68307 * 292.54030 * 10 9 8 35 35 H 0.97001 * 120.00398 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5645 -0.8340 1.1864 6 1 3.9995 0.1535 1.0315 7 6 3.9675 -1.7620 0.0347 8 8 5.3744 -2.0080 0.0985 9 6 5.7976 -2.6805 1.2870 10 6 5.4884 -1.7995 2.5027 11 7 4.0714 -1.4071 2.4433 12 6 3.2488 -1.5702 3.5259 13 1 2.1903 -1.7283 3.3808 14 6 3.7754 -1.5324 4.8097 15 7 5.0116 -1.1237 5.0021 16 14 2.7295 -2.0615 6.2641 17 1 2.3159 -3.4768 6.0877 18 1 3.5185 -1.9292 7.5153 19 1 1.5230 -1.1997 6.3458 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8932 -0.5138 -0.8900 24 1 1.6935 1.9504 -0.9000 25 1 1.6602 1.9621 0.8797 26 1 3.1299 1.4425 0.0205 27 1 1.6036 -1.7191 1.2963 28 1 1.7536 -0.1573 2.1368 29 1 3.7234 -1.2890 -0.9165 30 1 3.4286 -2.7055 0.1219 31 1 5.2654 -3.6273 1.3787 32 1 6.8699 -2.8690 1.2363 33 1 5.6762 -2.3592 3.4191 34 1 6.1175 -0.9096 2.4808 35 1 5.3798 -1.0975 5.8992 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334254761.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:40 Heat of formation + Delta-G solvation = -39.541112 kcal Electronic energy + Delta-G solvation = -15335.858969 eV Core-core repulsion = 12948.112750 eV Total energy + Delta-G solvation = -2387.746219 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.59157 -36.10882 -34.25828 -31.40727 -30.22635 -27.09331 -26.74536 -25.76614 -23.32220 -21.96503 -19.74494 -19.14986 -16.57446 -15.55188 -15.31429 -14.61842 -14.32539 -14.00547 -13.88930 -13.34908 -12.79271 -12.76270 -12.49212 -11.94578 -11.58258 -11.25977 -11.16482 -11.01323 -10.77824 -10.64845 -10.22808 -10.14716 -10.06075 -9.86618 -9.75622 -9.48457 -8.77147 -8.48834 -6.61346 -5.76300 -3.22719 3.37161 3.42829 3.43284 4.45967 4.65432 5.09963 5.27658 5.34851 5.41490 5.57840 5.80279 5.87383 5.93712 6.00830 6.05465 6.12613 6.14903 6.24959 6.27548 6.39126 6.43574 6.52631 6.57675 6.61611 6.70973 7.05002 7.06166 7.26534 7.62928 7.77474 8.01306 8.43591 9.20112 9.83045 10.41356 11.31217 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023761 B = 0.012501 C = 0.009066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.134245 B = 2239.222233 C = 3087.569347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.103 4.103 5 C 0.139 3.861 6 H 0.036 0.964 7 C 0.052 3.948 8 O -0.398 6.398 9 C 0.036 3.964 10 C 0.141 3.859 11 N -0.593 5.593 12 C -0.248 4.248 13 H 0.071 0.929 14 C 0.001 3.999 15 N -0.907 5.907 16 Si 0.904 3.096 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.283 1.283 20 H 0.053 0.947 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.025 0.975 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.460 0.323 -8.313 9.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.141 4.141 5 C 0.033 3.967 6 H 0.054 0.946 7 C -0.026 4.026 8 O -0.317 6.317 9 C -0.042 4.042 10 C 0.016 3.984 11 N -0.317 5.317 12 C -0.377 4.377 13 H 0.088 0.912 14 C -0.197 4.197 15 N -0.552 5.552 16 Si 0.734 3.266 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.209 1.209 20 H 0.072 0.928 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.044 0.956 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.249 0.398 -8.271 9.307 hybrid contribution -0.623 -0.320 1.103 1.307 sum -4.871 0.077 -7.168 8.667 Atomic orbital electron populations 1.21819 0.95851 1.01300 1.01140 1.21186 0.95136 0.96504 0.98992 1.21876 1.01679 0.96005 1.00834 1.21662 0.95274 1.00111 0.97016 1.21166 0.93093 0.94749 0.87705 0.94622 1.23086 0.82106 0.98608 0.98849 1.87766 1.23400 1.79325 1.41196 1.23338 0.98271 0.95425 0.87168 1.21449 0.84955 0.96281 0.95752 1.44131 1.07083 1.71337 1.09191 1.19146 0.91662 1.42832 0.84081 0.91185 1.25116 0.96863 1.00122 0.97643 1.69968 1.14662 1.49761 1.20843 0.86351 0.79565 0.78617 0.82104 1.21068 1.21624 1.20890 0.92793 0.93373 0.93004 0.91730 0.93636 0.92795 0.92153 0.92323 0.90639 0.90378 0.94104 0.94327 0.90409 0.88564 0.95647 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 2 C -0.10 -1.46 2.81 -90.62 -0.25 -1.72 16 3 C -0.15 -2.11 8.99 37.16 0.33 -1.77 16 4 C -0.10 -1.92 2.94 -26.73 -0.08 -1.99 16 5 C 0.14 2.97 3.01 -67.42 -0.20 2.77 16 6 H 0.04 0.81 6.30 -51.93 -0.33 0.48 16 7 C 0.05 1.00 5.88 37.31 0.22 1.22 16 8 O -0.40 -8.43 10.74 -35.23 -0.38 -8.81 16 9 C 0.04 0.75 6.99 37.31 0.26 1.01 16 10 C 0.14 3.50 5.40 -3.54 -0.02 3.49 16 11 N -0.59 -15.08 3.05 -164.30 -0.50 -15.58 16 12 C -0.25 -6.70 8.65 -15.06 -0.13 -6.83 16 13 H 0.07 1.83 6.27 -52.48 -0.33 1.50 16 14 C 0.00 0.02 5.07 -17.43 -0.09 -0.07 16 15 N -0.91 -26.33 10.95 55.49 0.61 -25.72 16 16 Si 0.90 21.66 29.57 -169.99 -5.03 16.63 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.91 6.60 -51.93 -0.34 0.56 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.94 6.40 -51.93 -0.33 0.60 16 27 H 0.06 1.11 7.89 -51.93 -0.41 0.70 16 28 H 0.07 1.56 7.17 -51.93 -0.37 1.19 16 29 H 0.08 1.30 6.93 -51.93 -0.36 0.94 16 30 H 0.04 0.79 8.12 -51.93 -0.42 0.36 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.10 2.59 6.12 -51.93 -0.32 2.27 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 269.81 15.07 4.07 4.07 Total: -1.00 -29.29 269.81 -6.58 -35.87 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.73 Total: -1.06 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 0.38 Total: -5.40 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.11 Total: -41.30 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.38 Total: -8.81 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.29 -6.58 -35.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334254761.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.668 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds