Wall clock time and date at job start Sun Mar 29 2020 22:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47244 * 2 1 4 4 C 1.53005 * 109.47159 * 120.00400 * 2 1 3 5 5 C 1.52993 * 109.47033 * 174.87183 * 4 2 1 6 6 H 1.09007 * 109.68048 * 53.95456 * 5 4 2 7 7 C 1.53298 * 109.71416 * 293.42249 * 5 4 2 8 8 O 1.42964 * 109.22607 * 187.95867 * 7 5 4 9 9 C 1.42969 * 114.16557 * 62.57460 * 8 7 5 10 10 C 1.53291 * 109.22250 * 297.42462 * 9 8 7 11 11 N 1.47145 * 108.38867 * 52.30120 * 10 9 8 12 12 C 1.36942 * 120.98067 * 129.48444 * 11 10 9 13 13 H 1.08009 * 119.99691 * 208.45139 * 12 11 10 14 14 C 1.38807 * 120.00229 * 28.45560 * 12 11 10 15 15 N 1.31617 * 119.99990 * 11.23452 * 14 12 11 16 16 Si 1.86795 * 119.99949 * 191.23720 * 14 12 11 17 17 H 1.48502 * 109.47484 * 59.99890 * 16 14 12 18 18 H 1.48503 * 109.46939 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47212 * 299.99446 * 16 14 12 20 20 H 1.09003 * 109.46858 * 299.99510 * 1 2 3 21 21 H 1.09002 * 109.47078 * 59.99816 * 1 2 3 22 22 H 1.09003 * 109.47208 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46505 * 240.00217 * 2 1 3 24 24 H 1.09000 * 109.47540 * 298.86387 * 3 2 1 25 25 H 1.09003 * 109.46907 * 58.86549 * 3 2 1 26 26 H 1.09001 * 109.46935 * 178.85756 * 3 2 1 27 27 H 1.09000 * 109.47153 * 54.86945 * 4 2 1 28 28 H 1.08993 * 109.46745 * 294.87366 * 4 2 1 29 29 H 1.09001 * 109.51528 * 68.03040 * 7 5 4 30 30 H 1.09004 * 109.50747 * 307.88104 * 7 5 4 31 31 H 1.08997 * 109.51177 * 57.34657 * 9 8 7 32 32 H 1.08997 * 109.50687 * 177.44528 * 9 8 7 33 33 H 1.09007 * 109.68232 * 172.02673 * 10 9 8 34 34 H 1.09003 * 109.68307 * 292.54030 * 10 9 8 35 35 H 0.97001 * 120.00398 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5645 -0.8340 1.1864 6 1 3.9995 0.1535 1.0315 7 6 3.9675 -1.7620 0.0347 8 8 5.3744 -2.0080 0.0985 9 6 5.7976 -2.6805 1.2870 10 6 5.4884 -1.7995 2.5027 11 7 4.0714 -1.4071 2.4433 12 6 3.2488 -1.5702 3.5259 13 1 2.1903 -1.7283 3.3808 14 6 3.7754 -1.5324 4.8097 15 7 5.0116 -1.1237 5.0021 16 14 2.7295 -2.0615 6.2641 17 1 2.3159 -3.4768 6.0877 18 1 3.5185 -1.9292 7.5153 19 1 1.5230 -1.1997 6.3458 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8932 -0.5138 -0.8900 24 1 1.6935 1.9504 -0.9000 25 1 1.6602 1.9621 0.8797 26 1 3.1299 1.4425 0.0205 27 1 1.6036 -1.7191 1.2963 28 1 1.7536 -0.1573 2.1368 29 1 3.7234 -1.2890 -0.9165 30 1 3.4286 -2.7055 0.1219 31 1 5.2654 -3.6273 1.3787 32 1 6.8699 -2.8690 1.2363 33 1 5.6762 -2.3592 3.4191 34 1 6.1175 -0.9096 2.4808 35 1 5.3798 -1.0975 5.8992 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334254761.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:39 Heat of formation + Delta-G solvation = -57.648199 kcal Electronic energy + Delta-G solvation = -15336.644151 eV Core-core repulsion = 12948.112750 eV Total energy + Delta-G solvation = -2388.531401 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.28235 -37.52394 -36.11120 -33.24486 -31.99975 -28.87888 -27.94945 -27.33518 -25.23342 -23.61180 -21.42601 -20.65615 -18.47037 -17.31143 -17.05383 -16.30585 -15.84988 -15.69540 -15.49469 -15.02573 -14.58104 -14.15745 -14.00819 -13.23137 -13.07034 -12.93421 -12.83195 -12.57714 -12.51672 -12.18522 -12.12684 -11.81434 -11.59858 -11.41227 -11.26591 -11.14278 -10.57854 -10.51481 -8.65080 -7.85367 -5.35115 1.45529 1.47315 1.53887 2.48596 3.03360 3.29205 3.46960 4.00500 4.11249 4.20720 4.26931 4.33464 4.47209 4.56664 4.63898 4.68129 4.82851 4.84602 4.90830 5.01470 5.05713 5.15253 5.17083 5.23990 5.33193 5.43312 5.55691 5.60449 5.65019 5.65851 6.30951 6.39333 7.11877 7.81513 8.35964 9.20310 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023761 B = 0.012501 C = 0.009066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.134245 B = 2239.222233 C = 3087.569347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.092 4.092 5 C 0.133 3.867 6 H 0.020 0.980 7 C 0.056 3.944 8 O -0.404 6.404 9 C 0.049 3.951 10 C 0.145 3.855 11 N -0.612 5.612 12 C -0.251 4.251 13 H 0.076 0.924 14 C -0.055 4.055 15 N -0.941 5.941 16 Si 0.967 3.033 17 H -0.277 1.277 18 H -0.296 1.296 19 H -0.276 1.276 20 H 0.046 0.954 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.113 0.887 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.105 0.895 33 H 0.070 0.930 34 H -0.004 1.004 35 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 -0.144 -9.924 11.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.130 4.130 5 C 0.027 3.973 6 H 0.038 0.962 7 C -0.022 4.022 8 O -0.323 6.323 9 C -0.029 4.029 10 C 0.019 3.981 11 N -0.337 5.337 12 C -0.381 4.381 13 H 0.094 0.906 14 C -0.250 4.250 15 N -0.588 5.588 16 Si 0.796 3.204 17 H -0.203 1.203 18 H -0.222 1.222 19 H -0.201 1.201 20 H 0.065 0.935 21 H 0.090 0.910 22 H 0.075 0.925 23 H 0.099 0.901 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.130 0.870 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.014 0.986 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.682 -0.071 -9.913 11.426 hybrid contribution -0.183 -0.126 1.559 1.575 sum -5.865 -0.197 -8.353 10.209 Atomic orbital electron populations 1.21787 0.94033 1.01949 1.01991 1.21160 0.96604 0.96172 0.97247 1.21860 1.00551 0.96075 1.01761 1.21547 0.93333 1.00031 0.98092 1.21392 0.94757 0.94324 0.86805 0.96197 1.23168 0.81240 0.98493 0.99292 1.87765 1.24498 1.79300 1.40708 1.23189 1.00075 0.94375 0.85287 1.21287 0.84699 0.95451 0.96686 1.44456 1.07094 1.71892 1.10252 1.19484 0.92182 1.41647 0.84821 0.90599 1.25880 0.98023 1.00846 1.00210 1.70145 1.16302 1.51477 1.20854 0.85338 0.78019 0.78470 0.78620 1.20253 1.22187 1.20145 0.93492 0.91012 0.92500 0.90098 0.90852 0.93828 0.93823 0.92610 0.93470 0.86960 0.93583 0.93729 0.87722 0.91168 0.98572 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.19 71.98 0.66 -2.52 16 2 C -0.09 -2.52 2.81 -10.79 -0.03 -2.55 16 3 C -0.15 -3.90 8.99 71.98 0.65 -3.26 16 4 C -0.09 -3.35 2.94 30.59 0.09 -3.26 16 5 C 0.13 5.61 3.01 44.97 0.14 5.74 16 6 H 0.02 0.92 6.30 -2.38 -0.02 0.91 16 7 C 0.06 2.03 5.88 72.08 0.42 2.45 16 8 O -0.40 -16.31 10.74 -148.98 -1.60 -17.91 16 9 C 0.05 1.98 6.99 72.08 0.50 2.48 16 10 C 0.14 7.33 5.40 86.35 0.47 7.80 16 11 N -0.61 -31.50 3.05 -673.73 -2.05 -33.55 16 12 C -0.25 -13.75 8.65 84.03 0.73 -13.03 16 13 H 0.08 3.98 6.27 -2.91 -0.02 3.96 16 14 C -0.06 -3.09 5.07 84.86 0.43 -2.66 16 15 N -0.94 -56.27 10.95 21.65 0.24 -56.03 16 16 Si 0.97 45.03 29.57 68.60 2.03 47.06 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.08 1.96 6.60 -2.39 -0.02 1.94 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.04 1.31 6.40 -2.39 -0.02 1.29 16 27 H 0.06 2.03 7.89 -2.39 -0.02 2.01 16 28 H 0.05 1.96 7.17 -2.39 -0.02 1.94 16 29 H 0.11 3.32 6.93 -2.39 -0.02 3.31 16 30 H 0.05 1.65 8.12 -2.38 -0.02 1.63 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 33 H 0.07 3.91 6.12 -2.38 -0.01 3.89 16 34 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -63.40 269.81 3.71 -59.69 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.04 Total: 9.54 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 4.05 Total: -8.79 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -1.82 Total: -89.59 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -1.60 Total: -17.91 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -63.40 3.71 -59.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334254761.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.046 kcal (2) G-P(sol) polarization free energy of solvation -63.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds