Wall clock time and date at job start Sun Mar 29 2020 22:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99662 * 2 1 4 4 C 1.52999 * 109.46824 * 269.99602 * 3 2 1 5 5 O 1.42898 * 112.85205 * 53.80548 * 4 3 2 6 6 C 1.53780 * 113.61478 * 282.49586 * 4 3 2 7 7 C 1.53782 * 87.08114 * 220.01921 * 6 4 3 8 8 C 1.53776 * 87.07880 * 25.43514 * 7 6 4 9 9 C 1.34775 * 120.00462 * 179.97438 * 2 1 3 10 10 O 1.21683 * 120.00208 * 180.02562 * 9 2 1 11 11 C 1.46373 * 119.99634 * 0.02562 * 9 2 1 12 12 H 1.08002 * 120.00452 * 0.02562 * 11 9 2 13 13 C 1.40050 * 119.99716 * 179.71971 * 11 9 2 14 14 N 1.30674 * 120.00151 * 0.28083 * 13 11 9 15 15 Si 1.86803 * 119.99913 * 180.27503 * 13 11 9 16 16 H 1.48508 * 109.46742 * 90.00451 * 15 13 11 17 17 H 1.48501 * 109.47216 * 210.00308 * 15 13 11 18 18 H 1.48499 * 109.47135 * 330.00649 * 15 13 11 19 19 H 1.08997 * 109.47504 * 270.00259 * 1 2 3 20 20 H 1.09002 * 109.47236 * 30.00645 * 1 2 3 21 21 H 1.09003 * 109.46685 * 150.00239 * 1 2 3 22 22 H 1.09000 * 109.46892 * 29.99368 * 3 2 1 23 23 H 1.08999 * 109.46909 * 150.00039 * 3 2 1 24 24 H 0.96700 * 113.99665 * 309.66921 * 5 4 3 25 25 H 1.09003 * 113.61449 * 334.57165 * 6 4 3 26 26 H 1.09003 * 113.61442 * 105.46927 * 6 4 3 27 27 H 1.08998 * 113.61264 * 270.88129 * 7 6 4 28 28 H 1.09006 * 113.61166 * 139.98224 * 7 6 4 29 29 H 1.09004 * 113.60985 * 220.01888 * 8 7 6 30 30 H 1.08997 * 113.61740 * 89.11852 * 8 7 6 31 31 H 0.97005 * 120.00029 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 8 1.2581 1.7669 -2.2250 6 6 3.6028 0.9515 -2.1248 7 6 4.0131 2.2949 -2.7508 8 6 3.3231 2.9729 -1.5554 9 6 2.1389 -1.1671 0.0005 10 8 3.3558 -1.1671 0.0010 11 6 1.4071 -2.4348 0.0005 12 1 0.3271 -2.4349 -0.0003 13 6 2.1074 -3.6476 -0.0049 14 7 3.4141 -3.6475 -0.0044 15 14 1.1735 -5.2654 -0.0126 16 1 0.9265 -5.6876 -1.4149 17 1 1.9758 -6.3035 0.6829 18 1 -0.1244 -5.0911 0.6877 19 1 -0.3634 0.0000 1.0276 20 1 -0.3634 0.8899 -0.5139 21 1 -0.3633 -0.8900 -0.5138 22 1 1.6082 2.0284 0.5137 23 1 3.1498 1.1385 0.5138 24 1 0.7178 0.9663 -2.1763 25 1 4.3381 0.5528 -1.4258 26 1 3.2674 0.2142 -2.8542 27 1 3.5294 2.4971 -3.7065 28 1 5.0913 2.4521 -2.7794 29 1 2.7619 3.8676 -1.8252 30 1 3.9819 3.1269 -0.7008 31 1 3.8992 -4.4876 -0.0077 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335598821.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:19 Heat of formation + Delta-G solvation = -63.323433 kcal Electronic energy + Delta-G solvation = -14966.816041 eV Core-core repulsion = 12442.205448 eV Total energy + Delta-G solvation = -2524.610592 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.38806 -37.10223 -34.29971 -33.50088 -32.45553 -28.58015 -26.07630 -25.33329 -24.70179 -22.36492 -19.23480 -19.15845 -16.50988 -16.06750 -15.63056 -15.00633 -14.81765 -14.19181 -14.11232 -13.23835 -12.78688 -12.42453 -12.12936 -11.81859 -11.55279 -11.44863 -11.20586 -11.00404 -10.84830 -10.67466 -10.39217 -10.28572 -10.18250 -9.78746 -9.20349 -8.86864 -7.60916 -7.20343 -6.22568 -4.67988 3.11125 3.18619 3.21352 4.05402 4.45726 4.50939 4.55724 5.06135 5.25192 5.37134 5.48769 5.71857 5.85888 5.96075 6.03002 6.05371 6.19463 6.28129 6.32218 6.48917 6.52386 6.66726 6.80538 6.94047 7.41201 7.55802 8.06439 8.13019 8.31719 8.99240 9.38207 10.54207 10.73004 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045136 B = 0.009390 C = 0.008591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.204279 B = 2981.101224 C = 3258.298235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.651 5.651 3 C 0.111 3.889 4 C 0.094 3.906 5 O -0.552 6.552 6 C -0.145 4.145 7 C -0.140 4.140 8 C -0.124 4.124 9 C 0.556 3.444 10 O -0.571 6.571 11 C -0.544 4.544 12 H 0.071 0.929 13 C 0.088 3.912 14 N -0.766 5.766 15 Si 0.905 3.095 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.265 1.265 19 H 0.032 0.968 20 H 0.046 0.954 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.082 0.918 24 H 0.378 0.622 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 7.267 -2.081 8.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.390 5.390 3 C -0.014 4.014 4 C 0.051 3.949 5 O -0.360 6.360 6 C -0.183 4.183 7 C -0.178 4.178 8 C -0.162 4.162 9 C 0.362 3.638 10 O -0.453 6.453 11 C -0.581 4.581 12 H 0.089 0.911 13 C -0.132 4.132 14 N -0.394 5.394 15 Si 0.730 3.270 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.189 1.189 19 H 0.051 0.949 20 H 0.064 0.936 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.100 0.900 24 H 0.228 0.772 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.441 7.733 -2.207 8.404 hybrid contribution -0.848 -1.380 0.146 1.627 sum -3.289 6.353 -2.060 7.444 Atomic orbital electron populations 1.21516 0.82299 1.01151 1.00071 1.48046 1.05072 1.05356 1.80499 1.21570 0.98478 0.86792 0.94544 1.22689 0.84588 0.96230 0.91370 1.86291 1.35320 1.43622 1.70725 1.23474 0.98956 0.95593 1.00255 1.22810 0.99535 0.97822 0.97605 1.22940 0.97680 0.96514 0.99081 1.18244 0.87062 0.82158 0.76363 1.90575 1.13852 1.86107 1.54738 1.21007 0.93680 0.89294 1.54125 0.91053 1.25723 0.94609 1.00269 0.92608 1.70014 1.07013 1.27266 1.35149 0.86413 0.80216 0.81552 0.78840 1.19756 1.20465 1.18909 0.94924 0.93579 0.90840 0.92529 0.89973 0.77246 0.88104 0.91896 0.90662 0.92011 0.91362 0.89199 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.68 9.16 59.84 0.55 2.23 16 2 N -0.65 -14.29 2.55 -183.25 -0.47 -14.76 16 3 C 0.11 2.17 5.05 -4.04 -0.02 2.15 16 4 C 0.09 1.71 1.53 -89.81 -0.14 1.58 16 5 O -0.55 -10.02 13.09 -35.23 -0.46 -10.48 16 6 C -0.15 -2.86 6.64 -25.92 -0.17 -3.03 16 7 C -0.14 -2.23 8.02 -25.92 -0.21 -2.44 16 8 C -0.12 -1.91 7.47 -25.92 -0.19 -2.11 16 9 C 0.56 15.20 7.43 -12.99 -0.10 15.10 16 10 O -0.57 -17.43 12.97 5.20 0.07 -17.36 16 11 C -0.54 -14.87 8.74 -35.63 -0.31 -15.18 16 12 H 0.07 1.78 6.00 -52.49 -0.31 1.47 16 13 C 0.09 2.39 5.50 -17.36 -0.10 2.30 16 14 N -0.77 -22.42 11.83 55.55 0.66 -21.76 16 15 Si 0.91 19.79 29.56 -169.99 -5.02 14.77 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 19 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 20 H 0.05 0.69 6.86 -51.93 -0.36 0.34 16 21 H 0.07 1.34 6.09 -51.93 -0.32 1.02 16 22 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 23 H 0.08 1.75 7.33 -51.93 -0.38 1.37 16 24 H 0.38 6.55 6.64 45.56 0.30 6.86 16 25 H 0.10 2.24 7.08 -51.93 -0.37 1.87 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 LS Contribution 256.03 15.07 3.86 3.86 Total: -1.00 -31.87 256.03 -5.58 -37.45 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -3.52 Total: 7.69 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -0.69 Total: 0.59 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.19 Total: -36.52 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.39 Total: -27.84 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.87 -5.58 -37.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335598821.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.873 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds