Wall clock time and date at job start Sun Mar 29 2020 22:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99662 * 2 1 4 4 C 1.52999 * 109.46824 * 269.99602 * 3 2 1 5 5 O 1.42898 * 112.85205 * 53.80548 * 4 3 2 6 6 C 1.53780 * 113.61478 * 282.49586 * 4 3 2 7 7 C 1.53782 * 87.08114 * 220.01921 * 6 4 3 8 8 C 1.53776 * 87.07880 * 25.43514 * 7 6 4 9 9 C 1.34775 * 120.00462 * 179.97438 * 2 1 3 10 10 O 1.21683 * 120.00208 * 180.02562 * 9 2 1 11 11 C 1.46373 * 119.99634 * 0.02562 * 9 2 1 12 12 H 1.08002 * 120.00452 * 0.02562 * 11 9 2 13 13 C 1.40050 * 119.99716 * 179.71971 * 11 9 2 14 14 N 1.30674 * 120.00151 * 0.28083 * 13 11 9 15 15 Si 1.86803 * 119.99913 * 180.27503 * 13 11 9 16 16 H 1.48508 * 109.46742 * 90.00451 * 15 13 11 17 17 H 1.48501 * 109.47216 * 210.00308 * 15 13 11 18 18 H 1.48499 * 109.47135 * 330.00649 * 15 13 11 19 19 H 1.08997 * 109.47504 * 270.00259 * 1 2 3 20 20 H 1.09002 * 109.47236 * 30.00645 * 1 2 3 21 21 H 1.09003 * 109.46685 * 150.00239 * 1 2 3 22 22 H 1.09000 * 109.46892 * 29.99368 * 3 2 1 23 23 H 1.08999 * 109.46909 * 150.00039 * 3 2 1 24 24 H 0.96700 * 113.99665 * 309.66921 * 5 4 3 25 25 H 1.09003 * 113.61449 * 334.57165 * 6 4 3 26 26 H 1.09003 * 113.61442 * 105.46927 * 6 4 3 27 27 H 1.08998 * 113.61264 * 270.88129 * 7 6 4 28 28 H 1.09006 * 113.61166 * 139.98224 * 7 6 4 29 29 H 1.09004 * 113.60985 * 220.01888 * 8 7 6 30 30 H 1.08997 * 113.61740 * 89.11852 * 8 7 6 31 31 H 0.97005 * 120.00029 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 8 1.2581 1.7669 -2.2250 6 6 3.6028 0.9515 -2.1248 7 6 4.0131 2.2949 -2.7508 8 6 3.3231 2.9729 -1.5554 9 6 2.1389 -1.1671 0.0005 10 8 3.3558 -1.1671 0.0010 11 6 1.4071 -2.4348 0.0005 12 1 0.3271 -2.4349 -0.0003 13 6 2.1074 -3.6476 -0.0049 14 7 3.4141 -3.6475 -0.0044 15 14 1.1735 -5.2654 -0.0126 16 1 0.9265 -5.6876 -1.4149 17 1 1.9758 -6.3035 0.6829 18 1 -0.1244 -5.0911 0.6877 19 1 -0.3634 0.0000 1.0276 20 1 -0.3634 0.8899 -0.5139 21 1 -0.3633 -0.8900 -0.5138 22 1 1.6082 2.0284 0.5137 23 1 3.1498 1.1385 0.5138 24 1 0.7178 0.9663 -2.1763 25 1 4.3381 0.5528 -1.4258 26 1 3.2674 0.2142 -2.8542 27 1 3.5294 2.4971 -3.7065 28 1 5.0913 2.4521 -2.7794 29 1 2.7619 3.8676 -1.8252 30 1 3.9819 3.1269 -0.7008 31 1 3.8992 -4.4876 -0.0077 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335598821.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:19 Heat of formation + Delta-G solvation = -86.763660 kcal Electronic energy + Delta-G solvation = -14967.832485 eV Core-core repulsion = 12442.205448 eV Total energy + Delta-G solvation = -2525.627037 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91994 -38.96694 -35.89471 -35.21745 -34.53754 -30.22796 -28.00863 -26.82309 -26.29073 -23.91933 -21.09630 -20.60042 -18.40377 -17.66778 -17.55443 -16.58129 -16.38736 -15.93350 -15.67024 -14.83388 -14.53234 -13.94978 -13.75373 -13.36229 -13.24065 -13.09092 -13.01835 -12.74475 -12.38968 -12.14169 -12.11734 -12.00114 -11.77956 -11.27714 -10.91850 -10.67354 -9.72130 -8.98730 -8.26667 -6.81267 1.39781 1.40431 1.55180 2.23592 2.48979 2.82835 3.09374 3.61389 3.67849 3.85573 3.97325 4.06503 4.44179 4.50612 4.61176 4.75399 4.77854 4.87948 4.95627 5.03433 5.04360 5.09761 5.35079 5.38404 5.46660 5.76142 6.15251 6.39941 6.67188 6.90607 7.43818 8.50997 8.70240 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045136 B = 0.009390 C = 0.008591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.204279 B = 2981.101224 C = 3258.298235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.651 5.651 3 C 0.110 3.890 4 C 0.093 3.907 5 O -0.549 6.549 6 C -0.158 4.158 7 C -0.126 4.126 8 C -0.109 4.109 9 C 0.540 3.460 10 O -0.616 6.616 11 C -0.570 4.570 12 H 0.091 0.909 13 C 0.030 3.970 14 N -0.820 5.820 15 Si 0.990 3.010 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.248 1.248 19 H 0.043 0.957 20 H 0.080 0.920 21 H 0.068 0.932 22 H 0.088 0.912 23 H 0.056 0.944 24 H 0.380 0.620 25 H 0.066 0.934 26 H 0.032 0.968 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.381 8.137 -2.280 10.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.389 5.389 3 C -0.014 4.014 4 C 0.050 3.950 5 O -0.356 6.356 6 C -0.196 4.196 7 C -0.163 4.163 8 C -0.147 4.147 9 C 0.346 3.654 10 O -0.502 6.502 11 C -0.606 4.606 12 H 0.109 0.891 13 C -0.185 4.185 14 N -0.450 5.450 15 Si 0.810 3.190 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.172 1.172 19 H 0.062 0.938 20 H 0.098 0.902 21 H 0.087 0.913 22 H 0.106 0.894 23 H 0.075 0.925 24 H 0.230 0.770 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.354 8.652 -2.407 9.980 hybrid contribution -0.281 -1.590 0.209 1.629 sum -4.635 7.061 -2.198 8.728 Atomic orbital electron populations 1.21686 0.79578 1.02617 1.01192 1.47884 1.06848 1.04870 1.79259 1.21694 0.97643 0.86342 0.95724 1.22743 0.84414 0.97667 0.90167 1.86298 1.35064 1.43659 1.70609 1.23413 0.99624 0.96872 0.99695 1.22766 1.00929 0.94543 0.98094 1.22929 0.96853 0.95691 0.99187 1.18573 0.86790 0.83957 0.76088 1.90539 1.15794 1.87279 1.56559 1.21535 0.94841 0.89965 1.54302 0.89087 1.26913 0.95449 1.04735 0.91388 1.70187 1.09366 1.28652 1.36752 0.85125 0.78944 0.75642 0.79280 1.18844 1.20105 1.17167 0.93842 0.90186 0.91312 0.89377 0.92525 0.77040 0.91520 0.94854 0.89797 0.90286 0.89189 0.87825 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.11 9.16 127.77 1.17 4.28 16 2 N -0.65 -28.43 2.55 -851.89 -2.18 -30.60 16 3 C 0.11 4.22 5.05 86.38 0.44 4.66 16 4 C 0.09 3.28 1.53 -10.27 -0.02 3.27 16 5 O -0.55 -18.76 13.09 -148.98 -1.95 -20.71 16 6 C -0.16 -6.38 6.64 31.12 0.21 -6.18 16 7 C -0.13 -3.80 8.02 31.12 0.25 -3.56 16 8 C -0.11 -3.07 7.47 31.12 0.23 -2.84 16 9 C 0.54 30.31 7.43 86.36 0.64 30.95 16 10 O -0.62 -39.47 12.97 -4.29 -0.06 -39.53 16 11 C -0.57 -31.41 8.74 24.83 0.22 -31.20 16 12 H 0.09 4.48 6.00 -2.91 -0.02 4.46 16 13 C 0.03 1.66 5.50 85.30 0.47 2.13 16 14 N -0.82 -49.64 11.83 21.84 0.26 -49.38 16 15 Si 0.99 40.59 29.56 68.60 2.03 42.61 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 19 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 20 H 0.08 2.15 6.86 -2.39 -0.02 2.14 16 21 H 0.07 2.38 6.09 -2.39 -0.01 2.37 16 22 H 0.09 2.80 8.07 -2.39 -0.02 2.78 16 23 H 0.06 2.46 7.33 -2.39 -0.02 2.45 16 24 H 0.38 12.54 6.64 -74.06 -0.49 12.05 16 25 H 0.07 3.14 7.08 -2.39 -0.02 3.13 16 26 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.10 2.65 8.10 -2.39 -0.02 2.63 16 31 H 0.27 15.03 8.29 -92.70 -0.77 14.26 16 Total: -1.00 -71.42 256.03 2.35 -69.06 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.64 Total: 27.03 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 3.61 Total: 1.52 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -1.92 Total: -79.98 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -2.01 Total: -60.24 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Total: -71.42 2.35 -69.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335598821.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.702 kcal (2) G-P(sol) polarization free energy of solvation -71.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds