Wall clock time and date at job start Sun Mar 29 2020 22:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46493 * 120.00495 * 2 1 4 4 C 1.50708 * 109.47106 * 270.00211 * 3 2 1 5 5 H 1.08004 * 119.99740 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00151 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99992 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00146 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47282 * 60.00001 * 8 6 4 10 10 H 1.48505 * 109.47090 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47115 * 299.99760 * 8 6 4 12 12 C 1.34780 * 119.99389 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99867 * 185.49190 * 12 2 1 14 14 C 1.50696 * 120.00288 * 5.49224 * 12 2 1 15 15 O 1.42897 * 112.85013 * 51.44313 * 14 12 2 16 16 C 1.53783 * 113.61557 * 280.24418 * 14 12 2 17 17 C 1.53788 * 87.08048 * 219.93407 * 16 14 12 18 18 C 1.53789 * 87.17254 * 25.38994 * 17 16 14 19 19 H 1.09001 * 109.47501 * 264.79485 * 1 2 3 20 20 H 1.09004 * 109.47176 * 24.79459 * 1 2 3 21 21 H 1.09005 * 109.47627 * 144.79162 * 1 2 3 22 22 H 1.09002 * 109.47150 * 29.99686 * 3 2 1 23 23 H 1.08997 * 109.47237 * 149.99926 * 3 2 1 24 24 H 0.96999 * 120.00430 * 179.97438 * 7 6 4 25 25 H 0.96697 * 114.00251 * 43.82150 * 15 14 12 26 26 H 1.08998 * 113.61476 * 105.38621 * 16 14 12 27 27 H 1.08999 * 113.68947 * 334.49541 * 16 14 12 28 28 H 1.08998 * 113.61249 * 139.97998 * 17 16 14 29 29 H 1.08998 * 113.61685 * 270.79872 * 17 16 14 30 30 H 1.09001 * 113.61170 * 89.15380 * 18 17 16 31 31 H 1.08991 * 113.61090 * 220.05961 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2418 6 6 3.1261 2.8778 -1.6729 7 7 3.5535 3.6179 -0.6732 8 14 3.4380 3.4166 -3.4340 9 1 2.1408 3.5935 -4.1347 10 1 4.1806 4.7027 -3.4340 11 1 4.2414 2.3819 -4.1333 12 6 2.1388 -1.1673 -0.0005 13 8 3.3474 -1.1699 0.1000 14 6 1.3904 -2.4693 -0.1260 15 8 0.4910 -2.4876 -1.2363 16 6 0.7530 -2.9429 1.1909 17 6 1.1843 -4.3654 0.7966 18 6 2.2935 -3.7136 -0.0459 19 1 -0.3634 -0.0932 1.0234 20 1 -0.3634 0.9330 -0.4310 21 1 -0.3634 -0.8397 -0.5925 22 1 1.6085 2.0283 0.5138 23 1 3.1499 1.1382 0.5138 24 1 4.0304 4.4437 -0.8504 25 1 0.8628 -2.1198 -2.0497 26 1 -0.3281 -2.8083 1.2260 27 1 1.2556 -2.5653 2.0814 28 1 1.5604 -4.9551 1.6326 29 1 0.4413 -4.8983 0.2032 30 1 3.2191 -3.5465 0.5050 31 1 2.4542 -4.2003 -1.0078 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336245010.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:55 Heat of formation + Delta-G solvation = -83.963010 kcal Electronic energy + Delta-G solvation = -14781.532152 eV Core-core repulsion = 12256.026561 eV Total energy + Delta-G solvation = -2525.505592 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.62641 -38.89471 -36.80554 -35.62465 -34.66990 -30.09830 -27.74233 -26.81547 -26.61618 -24.55201 -21.13417 -20.54392 -18.71754 -18.56196 -17.35603 -16.66966 -16.44906 -16.32830 -15.76005 -15.12880 -14.74970 -14.23562 -13.79571 -13.57988 -13.47040 -13.31909 -13.06370 -12.80934 -12.53323 -12.34024 -12.21752 -11.96551 -11.79084 -11.71368 -11.03930 -10.67267 -10.26500 -9.45216 -8.25500 -6.41652 1.35764 1.40176 1.47342 1.59376 2.24002 2.40233 2.92998 3.04030 3.46323 3.64848 3.75036 3.87576 4.38247 4.53764 4.69521 4.71801 4.82290 4.92692 4.97630 5.04195 5.05892 5.13396 5.18064 5.43212 5.51693 5.78583 6.00843 6.41658 6.65728 6.73379 7.21450 7.36898 8.81848 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049160 B = 0.008174 C = 0.008086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.431703 B = 3424.707198 C = 3461.750279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.598 5.598 3 C 0.255 3.745 4 C -0.547 4.547 5 H 0.058 0.942 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.972 3.028 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.478 3.522 13 O -0.591 6.591 14 C 0.093 3.907 15 O -0.523 6.523 16 C -0.118 4.118 17 C -0.113 4.113 18 C -0.149 4.149 19 H 0.063 0.937 20 H 0.064 0.936 21 H 0.107 0.893 22 H 0.021 0.979 23 H -0.003 1.003 24 H 0.268 0.732 25 H 0.393 0.607 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.889 -12.878 0.543 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.328 5.328 3 C 0.133 3.867 4 C -0.585 4.585 5 H 0.076 0.924 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.795 3.205 9 H -0.183 1.183 10 H -0.204 1.204 11 H -0.201 1.201 12 C 0.266 3.734 13 O -0.472 6.472 14 C 0.049 3.951 15 O -0.330 6.330 16 C -0.155 4.155 17 C -0.150 4.150 18 C -0.188 4.188 19 H 0.081 0.919 20 H 0.083 0.917 21 H 0.125 0.875 22 H 0.039 0.961 23 H 0.015 0.985 24 H 0.077 0.923 25 H 0.243 0.757 26 H 0.118 0.882 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.607 -12.947 1.082 15.584 hybrid contribution 1.010 1.246 -1.050 1.917 sum -7.597 -11.701 0.032 13.951 Atomic orbital electron populations 1.22186 0.77820 1.04696 1.02674 1.48200 1.08430 1.06226 1.69980 1.18827 0.91094 0.80421 0.96345 1.21679 1.37183 1.06847 0.92807 0.92388 1.25925 0.94764 0.96329 1.02283 1.70055 1.38720 1.14814 1.33315 0.85409 0.78910 0.77407 0.78741 1.18323 1.20375 1.20072 1.21892 0.87780 0.86919 0.76822 1.90626 1.16603 1.87903 1.52067 1.22586 0.91847 0.89334 0.91376 1.86352 1.40438 1.85225 1.21018 1.23065 1.02569 0.96915 0.92964 1.22721 0.97311 0.95129 0.99862 1.23461 0.98228 0.94715 1.02349 0.91891 0.91679 0.87452 0.96094 0.98465 0.92308 0.75677 0.88200 0.89390 0.89276 0.88108 0.90252 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.22 9.96 127.77 1.27 3.49 16 2 N -0.60 -26.20 2.86 -851.13 -2.43 -28.63 16 3 C 0.25 14.09 5.18 85.64 0.44 14.54 16 4 C -0.55 -31.69 9.39 25.60 0.24 -31.45 16 5 H 0.06 3.26 7.81 -2.91 -0.02 3.23 16 6 C 0.01 0.35 5.46 84.65 0.46 0.81 16 7 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 8 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 9 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.48 20.41 6.89 87.66 0.60 21.01 16 13 O -0.59 -31.13 15.49 -3.04 -0.05 -31.18 16 14 C 0.09 2.80 0.96 -10.95 -0.01 2.79 16 15 O -0.52 -13.58 10.92 -148.98 -1.63 -15.20 16 16 C -0.12 -2.79 7.16 31.12 0.22 -2.57 16 17 C -0.11 -2.25 8.01 31.13 0.25 -2.00 16 18 C -0.15 -4.04 7.24 31.18 0.23 -3.82 16 19 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 20 H 0.06 2.19 8.03 -2.38 -0.02 2.17 16 21 H 0.11 2.98 5.09 -2.38 -0.01 2.97 16 22 H 0.02 1.18 8.07 -2.39 -0.02 1.17 16 23 H 0.00 -0.18 7.35 -2.39 -0.02 -0.20 16 24 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 25 H 0.39 9.29 8.98 -74.06 -0.66 8.62 16 26 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.09 2.21 8.10 -2.39 -0.02 2.19 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 2.48 7.48 -2.39 -0.02 2.47 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -72.23 263.59 2.38 -69.85 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.46 Total: 12.15 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 3.71 Total: 2.80 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -2.15 Total: -85.16 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -1.67 Total: -46.38 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -72.23 2.38 -69.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336245010.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.109 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds