Wall clock time and date at job start Sun Mar 29 2020 22:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53004 * 112.85208 * 50.33322 * 3 2 1 5 5 C 1.53787 * 113.61632 * 279.13681 * 3 2 1 6 6 C 1.53781 * 87.07821 * 270.88643 * 5 3 2 7 7 H 1.09006 * 113.60989 * 220.01802 * 6 5 3 8 8 N 1.46500 * 113.61441 * 89.20092 * 6 5 3 9 9 C 1.36944 * 120.00025 * 104.50366 * 8 6 5 10 10 H 1.07999 * 120.00047 * 359.97438 * 9 8 6 11 11 C 1.38804 * 119.99824 * 179.97438 * 9 8 6 12 12 N 1.31619 * 120.00292 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00050 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47021 * 90.00033 * 13 11 9 15 15 H 1.48500 * 109.47127 * 210.00218 * 13 11 9 16 16 H 1.48501 * 109.46859 * 330.00116 * 13 11 9 17 17 C 1.53780 * 113.61396 * 181.52958 * 3 2 1 18 18 C 1.52999 * 113.61795 * 203.66454 * 17 3 2 19 19 C 1.52999 * 113.61463 * 334.56978 * 17 3 2 20 20 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 21 21 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 22 22 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46593 * 69.66779 * 4 3 2 24 24 H 1.09004 * 109.46805 * 189.66484 * 4 3 2 25 25 H 1.08998 * 109.47030 * 309.66590 * 4 3 2 26 26 H 1.09001 * 113.60911 * 25.43078 * 5 3 2 27 27 H 1.09001 * 113.61499 * 156.33895 * 5 3 2 28 28 H 0.96990 * 120.00105 * 284.49688 * 8 6 5 29 29 H 0.97001 * 120.00287 * 180.02562 * 12 11 9 30 30 H 1.09000 * 109.47202 * 59.99524 * 18 17 3 31 31 H 1.08996 * 109.47548 * 180.02562 * 18 17 3 32 32 H 1.09004 * 109.47410 * 300.00096 * 18 17 3 33 33 H 1.08996 * 109.47422 * 59.99863 * 19 17 3 34 34 H 1.09002 * 109.47291 * 179.97438 * 19 17 3 35 35 H 1.09003 * 109.47079 * 299.99585 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4296 2.2143 1.0853 5 6 2.0563 1.9593 -1.3912 6 6 3.4288 1.2901 -1.5735 7 1 4.1619 1.9258 -2.0704 8 7 3.3544 -0.0531 -2.1535 9 6 3.6952 -0.2526 -3.4648 10 1 4.0184 0.5804 -4.0715 11 6 3.6252 -1.5253 -4.0142 12 7 3.2317 -2.5406 -3.2747 13 14 4.0893 -1.7974 -5.8031 14 1 5.5387 -2.1065 -5.8969 15 1 3.3045 -2.9327 -6.3510 16 1 3.7937 -0.5690 -6.5834 17 6 3.5475 1.2954 -0.0376 18 6 4.1827 2.5692 0.5236 19 6 4.1662 0.0189 0.5356 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.7548 1.8638 2.0649 24 1 1.7795 3.2349 0.9300 25 1 0.3411 2.1917 1.0342 26 1 1.2940 1.5854 -2.0748 27 1 2.1019 3.0479 -1.3607 28 1 3.0638 -0.8011 -1.6088 29 1 3.1831 -3.4301 -3.6586 30 1 3.8836 2.6964 1.5640 31 1 5.2682 2.4905 0.4642 32 1 3.8488 3.4285 -0.0580 33 1 3.8212 -0.8414 -0.0378 34 1 5.2527 0.0831 0.4756 35 1 3.8657 -0.0945 1.5772 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336253936.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:54 Heat of formation + Delta-G solvation = -11.097156 kcal Electronic energy + Delta-G solvation = -15496.905021 eV Core-core repulsion = 13110.392225 eV Total energy + Delta-G solvation = -2386.512796 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04521 -35.83666 -33.43537 -30.56340 -30.04800 -28.04862 -27.05369 -26.02067 -23.65038 -21.51008 -20.97174 -17.71305 -17.10921 -15.22249 -15.16799 -14.79696 -14.69368 -13.94230 -13.54110 -13.03311 -12.78769 -12.59511 -12.11077 -11.96731 -11.89664 -11.44913 -11.33579 -10.98890 -10.87309 -10.79687 -10.63020 -10.24982 -10.07787 -9.77946 -9.50337 -9.23266 -8.75461 -8.64053 -6.82326 -5.67354 -2.94779 3.47893 3.52803 3.54600 4.17130 4.64859 4.99258 5.11766 5.35623 5.47825 5.64170 5.66486 5.72179 5.81183 5.87370 5.91728 6.00519 6.09211 6.11920 6.15948 6.23486 6.26816 6.38119 6.43792 6.52393 6.63588 6.78520 6.95461 7.18134 7.27847 7.78366 7.89855 8.52844 9.63662 10.26512 10.63308 11.54788 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037762 B = 0.009835 C = 0.009020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.316218 B = 2846.359665 C = 3103.340485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.345 6.345 3 C 0.100 3.900 4 C -0.167 4.167 5 C -0.199 4.199 6 C 0.182 3.818 7 H 0.058 0.942 8 N -0.698 5.698 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.929 5.929 13 Si 0.905 3.095 14 H -0.291 1.291 15 H -0.292 1.292 16 H -0.283 1.283 17 C -0.091 4.091 18 C -0.119 4.119 19 C -0.123 4.123 20 H 0.037 0.963 21 H 0.033 0.967 22 H 0.080 0.920 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.395 0.605 29 H 0.254 0.746 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 9.102 8.619 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.263 6.263 3 C 0.060 3.940 4 C -0.224 4.224 5 C -0.241 4.241 6 C 0.069 3.931 7 H 0.076 0.924 8 N -0.338 5.338 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.577 5.577 13 Si 0.736 3.264 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.209 1.209 17 C -0.093 4.093 18 C -0.177 4.177 19 C -0.181 4.181 20 H 0.056 0.944 21 H 0.052 0.948 22 H 0.099 0.901 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.607 8.880 8.416 12.510 hybrid contribution -0.264 -0.198 -0.825 0.889 sum -2.871 8.683 7.590 11.885 Atomic orbital electron populations 1.22632 0.82467 1.02081 0.99071 1.87999 1.18411 1.25438 1.94455 1.22422 0.93958 0.83605 0.94039 1.22242 1.00771 1.00013 0.99365 1.24428 1.03745 0.98733 0.97161 1.21093 0.93232 0.88688 0.90115 0.92405 1.42298 1.78215 1.03212 1.10074 1.19289 1.36883 0.93343 0.87513 0.91327 1.24729 1.02465 0.95777 0.97950 1.69691 1.53498 0.99281 1.35216 0.86221 0.77832 0.77226 0.85098 1.21808 1.21884 1.20867 1.22489 0.91886 0.95892 0.99020 1.21539 1.00244 0.95889 1.00024 1.21456 0.99175 0.98084 0.99350 0.94395 0.94817 0.90114 0.92466 0.91597 0.92756 0.91193 0.91088 0.76747 0.93630 0.92803 0.92321 0.92663 0.90357 0.93593 0.94144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.38 101.05 1.05 1.60 16 2 O -0.35 -6.81 8.37 -35.23 -0.29 -7.10 16 3 C 0.10 1.74 1.07 -89.80 -0.10 1.64 16 4 C -0.17 -2.29 7.74 37.16 0.29 -2.00 16 5 C -0.20 -3.71 6.77 -25.92 -0.18 -3.89 16 6 C 0.18 3.85 3.98 -66.98 -0.27 3.58 16 7 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 8 N -0.70 -18.25 4.68 -52.50 -0.25 -18.49 16 9 C -0.24 -6.83 9.98 -15.06 -0.15 -6.98 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 13 Si 0.90 22.84 29.55 -169.99 -5.02 17.82 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 15 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 C -0.09 -1.62 1.26 -153.56 -0.19 -1.81 16 18 C -0.12 -1.67 7.86 37.16 0.29 -1.37 16 19 C -0.12 -2.33 8.48 37.16 0.32 -2.01 16 20 H 0.04 0.61 7.72 -51.93 -0.40 0.21 16 21 H 0.03 0.45 6.39 -51.93 -0.33 0.12 16 22 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 23 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 24 H 0.07 0.81 7.08 -51.93 -0.37 0.44 16 25 H 0.05 0.70 6.27 -51.93 -0.33 0.37 16 26 H 0.07 1.46 7.78 -51.93 -0.40 1.06 16 27 H 0.07 1.13 7.50 -51.93 -0.39 0.74 16 28 H 0.39 11.04 4.95 -40.82 -0.20 10.84 16 29 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.05 0.66 7.35 -51.93 -0.38 0.28 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.71 7.25 -51.93 -0.38 0.34 16 33 H 0.08 1.77 5.55 -51.93 -0.29 1.48 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 272.75 15.07 4.11 4.11 Total: -1.00 -30.98 272.75 -5.31 -36.29 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.55 Total: 7.11 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 0.97 Total: -11.73 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.48 Total: -46.49 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.29 Total: -7.10 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.98 -5.31 -36.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336253936.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.192 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds