Wall clock time and date at job start Sun Mar 29 2020 22:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53004 * 112.85208 * 50.33322 * 3 2 1 5 5 C 1.53787 * 113.61632 * 279.13681 * 3 2 1 6 6 C 1.53781 * 87.07821 * 270.88643 * 5 3 2 7 7 H 1.09006 * 113.60989 * 220.01802 * 6 5 3 8 8 N 1.46500 * 113.61441 * 89.20092 * 6 5 3 9 9 C 1.36944 * 120.00025 * 104.50366 * 8 6 5 10 10 H 1.07999 * 120.00047 * 359.97438 * 9 8 6 11 11 C 1.38804 * 119.99824 * 179.97438 * 9 8 6 12 12 N 1.31619 * 120.00292 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00050 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47021 * 90.00033 * 13 11 9 15 15 H 1.48500 * 109.47127 * 210.00218 * 13 11 9 16 16 H 1.48501 * 109.46859 * 330.00116 * 13 11 9 17 17 C 1.53780 * 113.61396 * 181.52958 * 3 2 1 18 18 C 1.52999 * 113.61795 * 203.66454 * 17 3 2 19 19 C 1.52999 * 113.61463 * 334.56978 * 17 3 2 20 20 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 21 21 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 22 22 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46593 * 69.66779 * 4 3 2 24 24 H 1.09004 * 109.46805 * 189.66484 * 4 3 2 25 25 H 1.08998 * 109.47030 * 309.66590 * 4 3 2 26 26 H 1.09001 * 113.60911 * 25.43078 * 5 3 2 27 27 H 1.09001 * 113.61499 * 156.33895 * 5 3 2 28 28 H 0.96990 * 120.00105 * 284.49688 * 8 6 5 29 29 H 0.97001 * 120.00287 * 180.02562 * 12 11 9 30 30 H 1.09000 * 109.47202 * 59.99524 * 18 17 3 31 31 H 1.08996 * 109.47548 * 180.02562 * 18 17 3 32 32 H 1.09004 * 109.47410 * 300.00096 * 18 17 3 33 33 H 1.08996 * 109.47422 * 59.99863 * 19 17 3 34 34 H 1.09002 * 109.47291 * 179.97438 * 19 17 3 35 35 H 1.09003 * 109.47079 * 299.99585 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4296 2.2143 1.0853 5 6 2.0563 1.9593 -1.3912 6 6 3.4288 1.2901 -1.5735 7 1 4.1619 1.9258 -2.0704 8 7 3.3544 -0.0531 -2.1535 9 6 3.6952 -0.2526 -3.4648 10 1 4.0184 0.5804 -4.0715 11 6 3.6252 -1.5253 -4.0142 12 7 3.2317 -2.5406 -3.2747 13 14 4.0893 -1.7974 -5.8031 14 1 5.5387 -2.1065 -5.8969 15 1 3.3045 -2.9327 -6.3510 16 1 3.7937 -0.5690 -6.5834 17 6 3.5475 1.2954 -0.0376 18 6 4.1827 2.5692 0.5236 19 6 4.1662 0.0189 0.5356 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.7548 1.8638 2.0649 24 1 1.7795 3.2349 0.9300 25 1 0.3411 2.1917 1.0342 26 1 1.2940 1.5854 -2.0748 27 1 2.1019 3.0479 -1.3607 28 1 3.0638 -0.8011 -1.6088 29 1 3.1831 -3.4301 -3.6586 30 1 3.8836 2.6964 1.5640 31 1 5.2682 2.4905 0.4642 32 1 3.8488 3.4285 -0.0580 33 1 3.8212 -0.8414 -0.0378 34 1 5.2527 0.0831 0.4756 35 1 3.8657 -0.0945 1.5772 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336253936.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:53 Heat of formation + Delta-G solvation = -31.513848 kcal Electronic energy + Delta-G solvation = -15497.790355 eV Core-core repulsion = 13110.392225 eV Total energy + Delta-G solvation = -2387.398131 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.48471 -37.31111 -35.41605 -32.47117 -31.42550 -29.56404 -28.32981 -27.37054 -25.69068 -23.01937 -22.47907 -19.34743 -19.02078 -16.71560 -16.59919 -16.42565 -16.23461 -15.69650 -15.24295 -14.49929 -14.32786 -13.86467 -13.68425 -13.25243 -13.16893 -12.93119 -12.86896 -12.64320 -12.55735 -12.31892 -12.16182 -12.07456 -11.94559 -11.40293 -11.25870 -10.84889 -10.55563 -10.05244 -8.90245 -7.90001 -5.17025 1.45394 1.47842 1.56021 2.56561 2.87751 3.39394 3.60279 3.74474 4.07851 4.19915 4.27461 4.44821 4.46735 4.56244 4.59754 4.74865 4.82664 4.83183 4.90874 4.92743 4.98159 5.01660 5.13813 5.21759 5.25485 5.31208 5.40686 5.52702 5.70276 5.77656 6.32833 6.58497 7.38668 8.22725 8.46449 9.33402 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037762 B = 0.009835 C = 0.009020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.316218 B = 2846.359665 C = 3103.340485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.099 3.901 4 C -0.159 4.159 5 C -0.189 4.189 6 C 0.153 3.847 7 H 0.054 0.946 8 N -0.713 5.713 9 C -0.241 4.241 10 H 0.073 0.927 11 C -0.078 4.078 12 N -0.968 5.968 13 Si 0.973 3.027 14 H -0.287 1.287 15 H -0.297 1.297 16 H -0.270 1.270 17 C -0.083 4.083 18 C -0.114 4.114 19 C -0.119 4.119 20 H 0.030 0.970 21 H 0.065 0.935 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.105 0.895 28 H 0.383 0.617 29 H 0.249 0.751 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 11.376 9.621 15.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.216 4.216 5 C -0.229 4.229 6 C 0.043 3.957 7 H 0.072 0.928 8 N -0.353 5.353 9 C -0.373 4.373 10 H 0.091 0.909 11 C -0.270 4.270 12 N -0.619 5.619 13 Si 0.802 3.198 14 H -0.214 1.214 15 H -0.223 1.223 16 H -0.195 1.195 17 C -0.084 4.084 18 C -0.172 4.172 19 C -0.176 4.176 20 H 0.048 0.952 21 H 0.084 0.916 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.107 0.893 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.123 0.877 28 H 0.218 0.782 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.642 11.222 9.431 14.895 hybrid contribution -0.250 -0.854 -1.105 1.419 sum -2.892 10.368 8.326 13.608 Atomic orbital electron populations 1.22756 0.81064 1.02525 1.00168 1.87964 1.20193 1.27284 1.94654 1.22522 0.93803 0.83348 0.94410 1.22194 1.01279 1.00063 0.98076 1.24316 1.00532 1.00469 0.97631 1.21490 0.94846 0.86649 0.92730 0.92766 1.42436 1.78531 1.04996 1.09331 1.19697 1.35323 0.93461 0.88807 0.90914 1.25549 1.03573 0.95665 1.02203 1.69869 1.55621 0.99419 1.36980 0.85148 0.77295 0.77149 0.80221 1.21417 1.22340 1.19516 1.22512 0.92818 0.97200 0.95871 1.21552 1.00258 0.93879 1.01469 1.21366 0.99278 0.97229 0.99743 0.95178 0.91631 0.90226 0.91426 0.89328 0.91794 0.94257 0.87679 0.78164 0.94246 0.90272 0.91924 0.91132 0.94784 0.93352 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 10.38 113.37 1.18 2.16 16 2 O -0.38 -15.00 8.37 -148.98 -1.25 -16.25 16 3 C 0.10 3.24 1.07 -10.26 -0.01 3.23 16 4 C -0.16 -3.69 7.74 71.98 0.56 -3.14 16 5 C -0.19 -6.76 6.77 31.12 0.21 -6.55 16 6 C 0.15 6.45 3.98 45.61 0.18 6.63 16 7 H 0.05 2.26 8.08 -2.38 -0.02 2.24 16 8 N -0.71 -38.33 4.68 -320.01 -1.50 -39.83 16 9 C -0.24 -14.06 9.98 84.03 0.84 -13.22 16 10 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 11 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 12 N -0.97 -62.00 13.06 21.65 0.28 -61.71 16 13 Si 0.97 47.90 29.55 68.60 2.03 49.93 16 14 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 15 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 17 C -0.08 -2.78 1.26 -51.56 -0.07 -2.85 16 18 C -0.11 -2.74 7.86 71.98 0.57 -2.18 16 19 C -0.12 -4.44 8.48 71.98 0.61 -3.83 16 20 H 0.03 0.97 7.72 -2.39 -0.02 0.95 16 21 H 0.07 1.62 6.39 -2.39 -0.02 1.60 16 22 H 0.08 2.45 8.14 -2.38 -0.02 2.44 16 23 H 0.07 1.46 8.11 -2.39 -0.02 1.45 16 24 H 0.09 1.67 7.08 -2.38 -0.02 1.66 16 25 H 0.06 1.37 6.27 -2.39 -0.01 1.36 16 26 H 0.04 1.64 7.78 -2.39 -0.02 1.62 16 27 H 0.10 3.00 7.50 -2.39 -0.02 2.98 16 28 H 0.38 22.35 4.95 -92.72 -0.46 21.89 16 29 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.08 1.54 7.35 -2.39 -0.02 1.53 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.49 7.25 -2.38 -0.02 1.47 16 33 H 0.03 1.58 5.55 -2.39 -0.01 1.56 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -68.99 272.75 4.70 -64.29 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.60 Total: 27.51 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 4.53 Total: -23.94 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -1.21 Total: -101.54 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -1.25 Total: -16.25 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -68.99 4.70 -64.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336253936.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.775 kcal (2) G-P(sol) polarization free energy of solvation -68.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds