Wall clock time and date at job start Sun Mar 29 2020 22:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99791 * 2 1 4 4 C 1.53003 * 112.85648 * 311.19969 * 3 2 1 5 5 C 1.54052 * 113.62050 * 82.51334 * 3 2 1 6 6 C 1.53777 * 86.98882 * 139.97367 * 5 3 2 7 7 H 1.09000 * 113.61534 * 219.98060 * 6 5 3 8 8 N 1.46501 * 113.61257 * 89.16263 * 6 5 3 9 9 C 1.36937 * 120.00267 * 179.01789 * 8 6 5 10 10 H 1.08005 * 119.99670 * 0.02562 * 9 8 6 11 11 C 1.38809 * 120.00495 * 179.97438 * 9 8 6 12 12 N 1.31618 * 119.99901 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00158 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47524 * 270.00461 * 13 11 9 15 15 H 1.48498 * 109.47232 * 150.00555 * 13 11 9 16 16 H 1.48505 * 109.47332 * 30.00191 * 13 11 9 17 17 C 1.53777 * 87.17573 * 334.57147 * 6 5 3 18 18 C 1.52998 * 113.61772 * 140.01920 * 17 6 5 19 19 C 1.52998 * 113.61414 * 270.84582 * 17 6 5 20 20 H 1.09004 * 109.47526 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46521 * 299.99472 * 1 2 3 22 22 H 1.09000 * 109.47793 * 59.99462 * 1 2 3 23 23 H 1.09000 * 109.47200 * 295.64682 * 4 3 2 24 24 H 1.09001 * 109.46448 * 55.63723 * 4 3 2 25 25 H 1.08997 * 109.47107 * 175.64019 * 4 3 2 26 26 H 1.09003 * 113.60980 * 25.46848 * 5 3 2 27 27 H 1.09002 * 113.69636 * 254.49114 * 5 3 2 28 28 H 0.97001 * 120.00332 * 359.01937 * 8 6 5 29 29 H 0.97002 * 120.00053 * 359.97438 * 12 11 9 30 30 H 1.09001 * 109.46903 * 79.50835 * 18 17 6 31 31 H 1.08998 * 109.47373 * 199.50688 * 18 17 6 32 32 H 1.09004 * 109.47163 * 319.51230 * 18 17 6 33 33 H 1.08999 * 109.47509 * 40.49012 * 19 17 6 34 34 H 1.08997 * 109.47079 * 160.49646 * 19 17 6 35 35 H 1.09005 * 109.46497 * 280.48888 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4035 2.2260 -1.0608 5 6 2.0932 1.9441 1.3994 6 6 3.4777 2.4717 0.9876 7 1 4.2200 2.4182 1.7840 8 7 3.4359 3.7831 0.3360 9 6 4.5981 4.3851 -0.0665 10 1 5.5456 3.8928 0.0961 11 6 4.5586 5.6275 -0.6843 12 7 3.4039 6.2272 -0.8829 13 14 6.1440 6.4482 -1.2340 14 1 6.6738 7.2900 -0.1312 15 1 5.8752 7.2992 -2.4209 16 1 7.1434 5.4080 -1.5867 17 6 3.5480 1.2951 -0.0001 18 6 4.1633 1.6650 -1.3512 19 6 4.1542 0.0255 0.6012 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3632 0.5138 0.8901 22 1 -0.3635 0.5139 -0.8899 23 1 1.6255 1.8330 -2.0530 24 1 0.3233 2.2762 -0.9234 25 1 1.8292 3.2245 -0.9618 26 1 2.1267 1.2163 2.2102 27 1 1.3578 2.7313 1.5660 28 1 2.5849 4.2252 0.1897 29 1 2.5806 5.8009 -0.5978 30 1 5.2494 1.6886 -1.2616 31 1 3.8763 0.9232 -2.0964 32 1 3.8027 2.6468 -1.6581 33 1 3.7874 -0.1053 1.6193 34 1 3.8666 -0.8354 -0.0021 35 1 5.2407 0.1130 0.6149 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336253937.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:57 Heat of formation + Delta-G solvation = -9.473123 kcal Electronic energy + Delta-G solvation = -15590.516799 eV Core-core repulsion = 13204.074426 eV Total energy + Delta-G solvation = -2386.442373 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22111 -36.29872 -33.64674 -30.57684 -29.60562 -28.75305 -26.61227 -25.87839 -23.64916 -21.78407 -21.13835 -17.79539 -17.34652 -15.78499 -15.14889 -14.92287 -14.59234 -14.00398 -13.59028 -13.44853 -12.97651 -12.81803 -12.04497 -11.86224 -11.68325 -11.48931 -11.35158 -11.09589 -10.78199 -10.58551 -10.35814 -10.18768 -10.02499 -9.89235 -9.47159 -9.15428 -9.03227 -8.73281 -7.02387 -6.11829 -3.12290 3.51833 3.55793 3.69821 4.14405 4.64483 4.96733 5.03346 5.20379 5.38317 5.52463 5.58070 5.67260 5.73744 5.77029 5.87604 5.99344 6.04790 6.11652 6.12400 6.28193 6.34869 6.46497 6.54609 6.63080 6.72236 6.74546 6.88498 7.13418 7.36084 7.66123 7.85028 8.72252 9.18601 10.04508 10.19055 11.35707 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045176 B = 0.009574 C = 0.008901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.644502 B = 2923.773466 C = 3145.095732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.101 3.899 4 C -0.166 4.166 5 C -0.171 4.171 6 C 0.178 3.822 7 H 0.055 0.945 8 N -0.716 5.716 9 C -0.322 4.322 10 H 0.067 0.933 11 C -0.045 4.045 12 N -0.944 5.944 13 Si 1.080 2.920 14 H -0.296 1.296 15 H -0.289 1.289 16 H -0.294 1.294 17 C -0.094 4.094 18 C -0.122 4.122 19 C -0.113 4.113 20 H 0.075 0.925 21 H 0.035 0.965 22 H 0.040 0.960 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.369 0.631 29 H 0.254 0.746 30 H 0.046 0.954 31 H 0.030 0.970 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 -10.551 1.843 11.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C 0.062 3.938 4 C -0.223 4.223 5 C -0.209 4.209 6 C 0.067 3.933 7 H 0.073 0.927 8 N -0.359 5.359 9 C -0.453 4.453 10 H 0.085 0.915 11 C -0.242 4.242 12 N -0.590 5.590 13 Si 0.911 3.089 14 H -0.224 1.224 15 H -0.215 1.215 16 H -0.221 1.221 17 C -0.097 4.097 18 C -0.179 4.179 19 C -0.171 4.171 20 H 0.094 0.906 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.205 0.795 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.404 -9.413 1.137 9.781 hybrid contribution -1.193 -1.140 0.727 1.803 sum -3.597 -10.553 1.864 11.304 Atomic orbital electron populations 1.22623 0.82769 1.01516 0.99822 1.87926 1.18421 1.28338 1.94773 1.23066 0.94186 0.82243 0.94262 1.22276 0.99546 1.02226 0.98292 1.23911 0.99368 1.00142 0.97500 1.20988 0.93928 0.85383 0.93031 0.92705 1.42354 1.06352 1.16424 1.70765 1.20007 0.86614 1.02757 1.35906 0.91518 1.25719 1.04228 0.94619 0.99653 1.70876 0.97375 1.40454 1.50297 0.83220 0.73687 0.75485 0.76473 1.22388 1.21466 1.22093 1.22723 0.91063 0.97192 0.98731 1.21604 0.99856 1.02112 0.94345 1.21345 0.99352 0.96411 0.99962 0.90616 0.94587 0.94133 0.92188 0.93346 0.88482 0.89778 0.91793 0.79546 0.93516 0.93483 0.95131 0.89550 0.93215 0.92789 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.34 101.05 1.04 1.44 16 2 O -0.38 -6.30 9.74 -35.23 -0.34 -6.64 16 3 C 0.10 1.79 1.21 -89.66 -0.11 1.69 16 4 C -0.17 -2.98 7.28 37.16 0.27 -2.71 16 5 C -0.17 -3.01 6.80 -25.78 -0.18 -3.19 16 6 C 0.18 3.63 4.03 -67.12 -0.27 3.36 16 7 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 8 N -0.72 -17.17 3.42 -52.64 -0.18 -17.35 16 9 C -0.32 -8.64 8.19 -15.06 -0.12 -8.77 16 10 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 11 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 12 N -0.94 -28.30 13.70 55.49 0.76 -27.54 16 13 Si 1.08 25.61 29.92 -169.99 -5.09 20.53 16 14 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 C -0.09 -1.75 1.31 -153.69 -0.20 -1.95 16 18 C -0.12 -2.44 7.31 37.16 0.27 -2.17 16 19 C -0.11 -1.86 8.48 37.16 0.31 -1.55 16 20 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 21 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 22 H 0.04 0.52 6.51 -51.93 -0.34 0.18 16 23 H 0.06 1.07 7.74 -51.93 -0.40 0.67 16 24 H 0.05 0.77 6.55 -51.93 -0.34 0.43 16 25 H 0.10 2.01 4.53 -51.93 -0.24 1.78 16 26 H 0.08 1.36 7.63 -51.93 -0.40 0.96 16 27 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 28 H 0.37 9.10 4.92 -40.82 -0.20 8.90 16 29 H 0.25 7.46 6.77 -40.82 -0.28 7.18 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.97 5.18 -51.93 -0.27 1.70 16 33 H 0.05 0.77 7.33 -51.93 -0.38 0.39 16 34 H 0.05 0.87 7.95 -51.93 -0.41 0.45 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 268.33 15.07 4.04 4.04 Total: -1.00 -29.19 268.33 -5.29 -34.47 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.41 Total: 7.69 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 0.93 Total: -15.21 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.58 Total: -44.89 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.34 Total: -6.64 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.09 Total: 20.53 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.19 -5.29 -34.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336253937.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.002 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds