Wall clock time and date at job start Sun Mar 29 2020 22:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 C 1.53005 * 109.50455 * 299.99669 * 3 2 1 5 5 C 1.53101 * 109.51035 * 60.08378 * 3 2 1 6 6 O 1.43013 * 109.26069 * 176.82614 * 5 3 2 7 7 C 1.43010 * 113.73951 * 301.33632 * 6 5 3 8 8 C 1.53094 * 109.26151 * 58.66698 * 7 6 5 9 9 N 1.47009 * 109.54255 * 179.89297 * 3 2 1 10 10 C 1.46898 * 111.00404 * 57.64784 * 9 3 2 11 11 C 1.50700 * 109.47426 * 176.11020 * 10 9 3 12 12 H 1.07995 * 119.99887 * 5.44732 * 11 10 9 13 13 C 1.37878 * 119.99981 * 185.45280 * 11 10 9 14 14 N 1.31507 * 120.00181 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99880 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47178 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47156 * 119.99869 * 15 13 11 18 18 H 1.48499 * 109.46774 * 239.99885 * 15 13 11 19 19 H 1.08998 * 109.47335 * 59.99965 * 1 2 3 20 20 H 1.09002 * 109.47450 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47293 * 300.00439 * 1 2 3 22 22 H 1.08990 * 109.47326 * 239.99882 * 2 1 3 23 23 H 1.09001 * 109.46748 * 119.99573 * 2 1 3 24 24 H 1.08998 * 109.47036 * 180.08119 * 4 3 2 25 25 H 1.09008 * 109.46794 * 60.09133 * 4 3 2 26 26 H 1.08996 * 109.47624 * 300.09137 * 4 3 2 27 27 H 1.08996 * 109.50730 * 296.76611 * 5 3 2 28 28 H 1.09006 * 109.50283 * 56.85240 * 5 3 2 29 29 H 1.09002 * 109.50603 * 178.60730 * 7 6 5 30 30 H 1.09005 * 109.50731 * 298.73186 * 7 6 5 31 31 H 1.08997 * 109.50868 * 63.08670 * 8 7 6 32 32 H 1.09000 * 109.50850 * 183.21890 * 8 7 6 33 33 H 1.09001 * 109.47175 * 296.10992 * 10 9 3 34 34 H 1.08998 * 109.46698 * 56.10821 * 10 9 3 35 35 H 0.96999 * 120.00355 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5305 2.1645 -1.2491 5 6 1.5319 2.1645 1.2508 6 8 2.0716 3.4885 1.2833 7 6 3.5012 3.5275 1.2873 8 6 4.0292 2.8194 0.0369 9 7 3.5101 1.4443 0.0026 10 6 4.0396 0.7104 -1.1545 11 6 5.5429 0.8146 -1.1705 12 1 6.0596 1.2944 -0.3526 13 6 6.2585 0.2974 -2.2295 14 7 5.6293 -0.2872 -3.2253 15 14 8.1219 0.4272 -2.2496 16 1 8.5828 1.1247 -1.0223 17 1 8.7125 -0.9345 -2.2970 18 1 8.5516 1.1951 -3.4458 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.8953 3.1916 -1.2492 25 1 0.4404 2.1662 -1.2484 26 1 1.8924 1.6501 -2.1392 27 1 0.4434 2.2157 1.2246 28 1 1.8494 1.6194 2.1398 29 1 3.8370 4.5645 1.2876 30 1 3.8766 3.0225 2.1774 31 1 3.6980 3.3557 -0.8523 32 1 5.1186 2.7965 0.0642 33 1 3.7488 -0.3377 -1.0841 34 1 3.6359 1.1386 -2.0720 35 1 6.1327 -0.6508 -3.9705 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336354192.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:54 Heat of formation + Delta-G solvation = -45.118963 kcal Electronic energy + Delta-G solvation = -15473.617739 eV Core-core repulsion = 13085.629646 eV Total energy + Delta-G solvation = -2387.988093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.68274 -35.84039 -33.93045 -32.25027 -29.36674 -28.35788 -26.59263 -25.35275 -24.06522 -21.77463 -21.03901 -17.80829 -16.61051 -15.91785 -15.64522 -14.68443 -14.57444 -14.40275 -13.69728 -13.60762 -12.87939 -12.74745 -12.23070 -12.03344 -11.87942 -11.43576 -11.30239 -10.98074 -10.83892 -10.75970 -10.46852 -10.38964 -10.20546 -9.98383 -9.73179 -9.08816 -8.86099 -8.46058 -7.17553 -6.06246 -4.07414 3.28112 3.35827 3.39822 4.29055 4.39133 4.78438 5.24655 5.30500 5.35233 5.50302 5.57627 5.69489 5.76366 5.82268 5.87850 5.98354 6.04026 6.15575 6.18721 6.37909 6.40532 6.50309 6.54550 6.72057 6.75080 6.86121 7.32736 7.47083 7.58775 7.75370 8.04585 8.17508 8.55144 9.00662 9.56884 11.04776 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036130 B = 0.009927 C = 0.008392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.792749 B = 2819.875092 C = 3335.735911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C 0.074 3.926 4 C -0.175 4.175 5 C 0.077 3.923 6 O -0.392 6.392 7 C 0.061 3.939 8 C 0.026 3.974 9 N -0.526 5.526 10 C 0.188 3.812 11 C -0.513 4.513 12 H 0.064 0.936 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 H 0.055 0.945 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.094 0.906 33 H 0.032 0.968 34 H 0.001 0.999 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.552 3.756 6.351 10.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.017 4.017 4 C -0.233 4.233 5 C -0.001 4.001 6 O -0.311 6.311 7 C -0.016 4.016 8 C -0.102 4.102 9 N -0.251 5.251 10 C 0.063 3.937 11 C -0.552 4.552 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 H 0.074 0.926 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.092 0.908 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.113 0.887 33 H 0.050 0.950 34 H 0.019 0.981 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.458 3.587 6.614 10.594 hybrid contribution 0.996 0.111 -0.997 1.414 sum -6.462 3.698 5.617 9.327 Atomic orbital electron populations 1.21898 0.96450 1.01200 1.01492 1.21519 0.94475 0.95566 1.03265 1.21611 0.90447 0.95170 0.94434 1.22398 1.00353 1.01198 0.99359 1.22692 0.97569 0.83183 0.96608 1.87874 1.20841 1.27326 1.95026 1.22754 0.80564 1.00205 0.98096 1.22646 1.01861 0.89780 0.95947 1.62569 1.03349 1.13165 1.46036 1.19806 0.94746 0.93449 0.85653 1.21262 0.91345 1.37460 1.05133 0.91829 1.24978 0.98674 0.95345 0.95474 1.69962 1.35493 1.38741 1.09351 0.86478 0.85487 0.77775 0.77908 1.19680 1.20995 1.21112 0.92575 0.92990 0.93023 0.90825 0.91573 0.92442 0.92989 0.91865 0.89440 0.93081 0.89558 0.93022 0.94778 0.88749 0.94973 0.98084 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.21 37.16 0.34 -1.68 16 2 C -0.11 -1.86 4.68 -26.73 -0.13 -1.99 16 3 C 0.07 1.35 0.46 -131.49 -0.06 1.29 16 4 C -0.17 -3.15 7.32 37.16 0.27 -2.88 16 5 C 0.08 1.24 5.25 37.21 0.20 1.44 16 6 O -0.39 -6.84 10.28 -35.23 -0.36 -7.20 16 7 C 0.06 1.02 7.01 37.21 0.26 1.28 16 8 C 0.03 0.52 4.91 -3.71 -0.02 0.50 16 9 N -0.53 -11.35 4.59 -220.10 -1.01 -12.36 16 10 C 0.19 4.83 4.07 -4.98 -0.02 4.81 16 11 C -0.51 -14.21 8.32 -34.44 -0.29 -14.49 16 12 H 0.06 1.74 6.38 -52.49 -0.33 1.40 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 15 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.61 6.51 -51.93 -0.34 0.27 16 22 H 0.07 1.41 6.47 -51.93 -0.34 1.07 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.06 1.08 6.06 -51.93 -0.31 0.76 16 25 H 0.05 0.80 6.44 -51.92 -0.33 0.47 16 26 H 0.06 1.27 6.39 -51.93 -0.33 0.94 16 27 H 0.09 1.23 6.62 -51.93 -0.34 0.89 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.72 6.38 -51.93 -0.33 0.38 16 32 H 0.09 2.01 6.06 -51.93 -0.31 1.69 16 33 H 0.03 0.88 6.50 -51.93 -0.34 0.54 16 34 H 0.00 0.04 6.18 -51.93 -0.32 -0.28 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 261.14 15.07 3.94 3.94 Total: -1.00 -29.33 261.14 -6.48 -35.81 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.22 Total: -0.74 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 0.46 Total: -10.23 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.27 Total: -38.02 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.36 Total: -7.20 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.33 -6.48 -35.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336354192.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.308 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds