Wall clock time and date at job start Sun Mar 29 2020 22:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53002 * 109.50574 * 60.08938 * 3 2 1 5 5 C 1.53093 * 109.51183 * 299.99766 * 3 2 1 6 6 O 1.43010 * 109.26127 * 183.21877 * 5 3 2 7 7 C 1.43012 * 113.73959 * 58.67038 * 6 5 3 8 8 C 1.53101 * 109.26130 * 301.33272 * 7 6 5 9 9 N 1.47013 * 109.25580 * 56.84606 * 8 7 6 10 10 C 1.46897 * 110.99680 * 177.61550 * 9 8 7 11 11 C 1.50702 * 109.46648 * 293.63036 * 10 9 8 12 12 H 1.07996 * 120.00599 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99918 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00038 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99982 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47071 * 60.00188 * 15 13 11 17 17 H 1.48507 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47078 * 299.99837 * 15 13 11 19 19 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 21 21 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 22 22 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 23 23 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 24 24 H 1.08998 * 109.47324 * 59.99716 * 4 3 2 25 25 H 1.09003 * 109.47120 * 179.97438 * 4 3 2 26 26 H 1.08991 * 109.46995 * 299.99056 * 4 3 2 27 27 H 1.09005 * 109.50849 * 303.15388 * 5 3 2 28 28 H 1.09007 * 109.50386 * 63.28389 * 5 3 2 29 29 H 1.09003 * 109.50408 * 61.26688 * 7 6 5 30 30 H 1.09006 * 109.51068 * 181.39272 * 7 6 5 31 31 H 1.08993 * 109.50738 * 176.78506 * 8 7 6 32 32 H 1.09005 * 109.50220 * 296.91435 * 8 7 6 33 33 H 1.08996 * 109.47951 * 53.62914 * 10 9 8 34 34 H 1.09006 * 109.46941 * 173.63717 * 10 9 8 35 35 H 0.96995 * 120.00360 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5321 2.1639 1.2501 5 6 1.5301 2.1651 -1.2497 6 8 2.0705 3.4887 -1.2828 7 6 3.5001 3.5269 -1.2894 8 6 4.0301 2.8182 -0.0401 9 7 3.5102 1.4435 -0.0053 10 6 4.0411 0.7090 1.1508 11 6 5.5270 0.5191 0.9858 12 1 6.0269 0.9056 0.1101 13 6 6.2483 -0.1483 1.9531 14 7 5.6395 -0.6195 3.0193 15 14 8.0902 -0.3831 1.7489 16 1 8.7515 0.9435 1.6598 17 1 8.6269 -1.1268 2.9170 18 1 8.3564 -1.1534 0.5076 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8968 1.6499 2.1395 25 1 1.8961 3.1913 1.2498 26 1 0.4422 2.1642 1.2518 27 1 1.8463 1.6205 -2.1395 28 1 0.4416 2.2169 -1.2215 29 1 3.8736 3.0219 -2.1803 30 1 3.8366 4.5637 -1.2900 31 1 5.1193 2.7947 -0.0694 32 1 3.7007 3.3545 0.8499 33 1 3.8462 1.2749 2.0617 34 1 3.5555 -0.2646 1.2169 35 1 6.1468 -1.0893 3.6995 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336354193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:57 Heat of formation + Delta-G solvation = -45.802745 kcal Electronic energy + Delta-G solvation = -15452.729906 eV Core-core repulsion = 13064.712162 eV Total energy + Delta-G solvation = -2388.017744 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.69325 -35.85478 -33.87143 -32.28292 -29.37147 -28.40989 -26.59122 -25.28393 -24.11461 -21.73899 -21.07729 -17.82992 -16.56674 -15.94146 -15.67951 -14.73983 -14.54338 -14.39278 -13.67516 -13.65614 -12.86473 -12.75011 -12.23144 -12.03597 -11.95277 -11.40870 -11.27167 -10.94290 -10.84890 -10.80971 -10.50923 -10.33279 -10.17139 -10.03475 -9.75592 -9.15749 -8.87243 -8.40875 -7.21843 -6.03373 -4.04384 3.32212 3.36443 3.39168 4.27052 4.40450 4.77254 5.24077 5.32182 5.35161 5.49345 5.56779 5.66578 5.74767 5.80546 5.85830 5.97310 6.02813 6.14284 6.17639 6.34717 6.39580 6.49043 6.52187 6.65532 6.75622 6.85066 7.30824 7.38363 7.56331 7.78835 8.09255 8.18619 8.55178 9.02569 9.59372 11.07327 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.035517 B = 0.009836 C = 0.008389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.174293 B = 2845.998384 C = 3336.931122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C 0.074 3.926 4 C -0.174 4.174 5 C 0.076 3.924 6 O -0.392 6.392 7 C 0.062 3.938 8 C 0.026 3.974 9 N -0.524 5.524 10 C 0.190 3.810 11 C -0.509 4.509 12 H 0.061 0.939 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.897 3.103 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.276 1.276 19 H 0.051 0.949 20 H 0.055 0.945 21 H 0.051 0.949 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.033 0.967 33 H -0.007 1.007 34 H 0.038 0.962 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 4.344 -5.998 10.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.017 4.017 4 C -0.232 4.232 5 C -0.001 4.001 6 O -0.310 6.310 7 C -0.015 4.015 8 C -0.103 4.103 9 N -0.249 5.249 10 C 0.065 3.935 11 C -0.547 4.547 12 H 0.079 0.921 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.725 3.275 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 H 0.070 0.930 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.051 0.949 33 H 0.011 0.989 34 H 0.056 0.944 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.559 4.164 -6.258 10.660 hybrid contribution 1.003 -0.058 0.850 1.316 sum -6.556 4.106 -5.408 9.439 Atomic orbital electron populations 1.21900 0.96476 1.01216 1.01442 1.21564 0.94403 0.95511 1.03485 1.21617 0.90425 0.95254 0.94383 1.22395 1.00480 1.01130 0.99218 1.22702 0.97572 0.83133 0.96666 1.87874 1.20750 1.27394 1.95027 1.22721 0.80618 1.00164 0.97994 1.22629 1.01504 0.89969 0.96165 1.62572 1.03282 1.12813 1.46230 1.19813 0.95116 0.93203 0.85389 1.21136 0.92491 1.35684 1.05415 0.92087 1.24971 0.98616 0.95740 0.95199 1.69939 1.36015 1.38129 1.09701 0.86582 0.85219 0.78232 0.77489 1.20327 1.21368 1.20195 0.92971 0.92612 0.93045 0.90596 0.91479 0.92074 0.92487 0.92913 0.93005 0.89398 0.92912 0.89529 0.89192 0.94871 0.98881 0.94406 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.21 37.16 0.34 -1.69 16 2 C -0.11 -1.91 4.71 -26.73 -0.13 -2.03 16 3 C 0.07 1.34 0.46 -131.49 -0.06 1.28 16 4 C -0.17 -3.09 7.33 37.16 0.27 -2.82 16 5 C 0.08 1.23 5.24 37.21 0.20 1.43 16 6 O -0.39 -6.77 10.28 -35.23 -0.36 -7.13 16 7 C 0.06 1.03 7.01 37.21 0.26 1.29 16 8 C 0.03 0.51 5.07 -3.71 -0.02 0.49 16 9 N -0.52 -11.30 4.48 -220.10 -0.99 -12.28 16 10 C 0.19 4.87 3.87 -4.98 -0.02 4.85 16 11 C -0.51 -14.18 8.49 -34.44 -0.29 -14.48 16 12 H 0.06 1.68 7.14 -52.49 -0.37 1.31 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 15 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.73 6.43 -51.93 -0.33 0.39 16 21 H 0.05 0.61 6.51 -51.93 -0.34 0.27 16 22 H 0.08 1.47 6.18 -51.93 -0.32 1.15 16 23 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.06 1.20 6.70 -51.93 -0.35 0.86 16 25 H 0.06 1.05 6.07 -51.93 -0.32 0.73 16 26 H 0.05 0.81 6.43 -51.93 -0.33 0.47 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.23 6.62 -51.92 -0.34 0.89 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.09 1.88 6.82 -51.93 -0.35 1.52 16 32 H 0.03 0.68 6.39 -51.93 -0.33 0.35 16 33 H -0.01 -0.18 6.90 -51.93 -0.36 -0.54 16 34 H 0.04 1.03 5.76 -51.93 -0.30 0.73 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 262.71 15.07 3.96 3.96 Total: -1.00 -29.46 262.71 -6.52 -35.98 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.30 Total: -1.11 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 0.46 Total: -10.19 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.25 Total: -38.09 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.36 Total: -7.13 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.46 -6.52 -35.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336354193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.827 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds