Wall clock time and date at job start Sun Mar 29 2020 22:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53002 * 109.50574 * 60.08938 * 3 2 1 5 5 C 1.53093 * 109.51183 * 299.99766 * 3 2 1 6 6 O 1.43010 * 109.26127 * 183.21877 * 5 3 2 7 7 C 1.43012 * 113.73959 * 58.67038 * 6 5 3 8 8 C 1.53101 * 109.26130 * 301.33272 * 7 6 5 9 9 N 1.47013 * 109.25580 * 56.84606 * 8 7 6 10 10 C 1.46897 * 110.99680 * 177.61550 * 9 8 7 11 11 C 1.50702 * 109.46648 * 293.63036 * 10 9 8 12 12 H 1.07996 * 120.00599 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99918 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00038 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99982 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47071 * 60.00188 * 15 13 11 17 17 H 1.48507 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47078 * 299.99837 * 15 13 11 19 19 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 21 21 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 22 22 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 23 23 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 24 24 H 1.08998 * 109.47324 * 59.99716 * 4 3 2 25 25 H 1.09003 * 109.47120 * 179.97438 * 4 3 2 26 26 H 1.08991 * 109.46995 * 299.99056 * 4 3 2 27 27 H 1.09005 * 109.50849 * 303.15388 * 5 3 2 28 28 H 1.09007 * 109.50386 * 63.28389 * 5 3 2 29 29 H 1.09003 * 109.50408 * 61.26688 * 7 6 5 30 30 H 1.09006 * 109.51068 * 181.39272 * 7 6 5 31 31 H 1.08993 * 109.50738 * 176.78506 * 8 7 6 32 32 H 1.09005 * 109.50220 * 296.91435 * 8 7 6 33 33 H 1.08996 * 109.47951 * 53.62914 * 10 9 8 34 34 H 1.09006 * 109.46941 * 173.63717 * 10 9 8 35 35 H 0.96995 * 120.00360 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5321 2.1639 1.2501 5 6 1.5301 2.1651 -1.2497 6 8 2.0705 3.4887 -1.2828 7 6 3.5001 3.5269 -1.2894 8 6 4.0301 2.8182 -0.0401 9 7 3.5102 1.4435 -0.0053 10 6 4.0411 0.7090 1.1508 11 6 5.5270 0.5191 0.9858 12 1 6.0269 0.9056 0.1101 13 6 6.2483 -0.1483 1.9531 14 7 5.6395 -0.6195 3.0193 15 14 8.0902 -0.3831 1.7489 16 1 8.7515 0.9435 1.6598 17 1 8.6269 -1.1268 2.9170 18 1 8.3564 -1.1534 0.5076 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8968 1.6499 2.1395 25 1 1.8961 3.1913 1.2498 26 1 0.4422 2.1642 1.2518 27 1 1.8463 1.6205 -2.1395 28 1 0.4416 2.2169 -1.2215 29 1 3.8736 3.0219 -2.1803 30 1 3.8366 4.5637 -1.2900 31 1 5.1193 2.7947 -0.0694 32 1 3.7007 3.3545 0.8499 33 1 3.8462 1.2749 2.0617 34 1 3.5555 -0.2646 1.2169 35 1 6.1468 -1.0893 3.6995 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336354193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:57 Heat of formation + Delta-G solvation = -66.300493 kcal Electronic energy + Delta-G solvation = -15453.618755 eV Core-core repulsion = 13064.712162 eV Total energy + Delta-G solvation = -2388.906593 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.18011 -37.31728 -35.56225 -34.24449 -30.70941 -30.19907 -28.16941 -27.02987 -25.46179 -23.65206 -22.51257 -19.33485 -18.63253 -17.44922 -17.11737 -16.52046 -16.16418 -15.92021 -15.25449 -15.03158 -14.58579 -14.27763 -13.87277 -13.60588 -13.53218 -12.92089 -12.81599 -12.68311 -12.59824 -12.19123 -12.09844 -12.03114 -11.90715 -11.54202 -11.29393 -11.05157 -10.60839 -10.32288 -8.99209 -8.20944 -6.30669 1.39015 1.42008 1.49815 2.38530 2.95632 3.10441 3.19308 3.83364 3.98349 4.12196 4.17978 4.30533 4.43410 4.44162 4.55769 4.66203 4.74202 4.79565 4.88361 4.92180 4.99713 5.04117 5.16683 5.17464 5.20425 5.36759 5.43878 5.48570 5.64656 6.06212 6.21107 6.32661 6.65056 6.85313 7.38487 8.89668 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.035517 B = 0.009836 C = 0.008389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.174293 B = 2845.998384 C = 3336.931122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C 0.066 3.934 4 C -0.165 4.165 5 C 0.080 3.920 6 O -0.395 6.395 7 C 0.071 3.929 8 C 0.025 3.975 9 N -0.532 5.532 10 C 0.210 3.790 11 C -0.526 4.526 12 H 0.061 0.939 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.268 1.268 19 H 0.064 0.936 20 H 0.058 0.942 21 H 0.075 0.925 22 H 0.039 0.961 23 H 0.062 0.938 24 H 0.029 0.971 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.120 0.880 29 H 0.059 0.941 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.021 0.979 33 H -0.040 1.040 34 H 0.015 0.985 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.175 5.040 -7.621 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.024 4.024 4 C -0.223 4.223 5 C 0.003 3.997 6 O -0.313 6.313 7 C -0.006 4.006 8 C -0.104 4.104 9 N -0.257 5.257 10 C 0.084 3.916 11 C -0.564 4.564 12 H 0.079 0.921 13 C -0.196 4.196 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.193 1.193 19 H 0.083 0.917 20 H 0.077 0.923 21 H 0.094 0.906 22 H 0.058 0.942 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.076 0.924 28 H 0.137 0.863 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.092 0.908 32 H 0.039 0.961 33 H -0.023 1.023 34 H 0.033 0.967 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.095 4.874 -7.900 12.316 hybrid contribution 1.123 -0.276 1.367 1.790 sum -6.972 4.598 -6.533 10.603 Atomic orbital electron populations 1.21847 0.93013 1.02606 1.02701 1.21514 0.97373 0.94355 1.01464 1.21862 0.88225 0.96437 0.95892 1.22304 1.02295 0.99990 0.97727 1.22806 0.99218 0.82450 0.95194 1.87880 1.20777 1.27864 1.94816 1.22731 0.80417 1.01449 0.95992 1.22665 1.00702 0.89256 0.97751 1.62500 1.05850 1.13639 1.43706 1.19390 0.94366 0.92204 0.85689 1.21478 0.93751 1.35714 1.05494 0.92102 1.25887 1.03667 0.95264 0.94737 1.70076 1.37965 1.38823 1.10551 0.85472 0.79120 0.78553 0.77689 1.19290 1.20888 1.19325 0.91707 0.92304 0.90629 0.94182 0.91948 0.95229 0.93231 0.89836 0.92437 0.86264 0.92235 0.86594 0.90846 0.96094 1.02278 0.96667 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.21 71.98 0.66 -2.82 16 2 C -0.11 -3.70 4.71 30.60 0.14 -3.55 16 3 C 0.07 2.35 0.46 3.54 0.00 2.36 16 4 C -0.16 -5.84 7.33 71.98 0.53 -5.31 16 5 C 0.08 2.36 5.24 72.01 0.38 2.73 16 6 O -0.39 -12.47 10.28 -148.98 -1.53 -14.00 16 7 C 0.07 2.20 7.01 72.02 0.50 2.71 16 8 C 0.02 0.98 5.07 86.32 0.44 1.42 16 9 N -0.53 -23.32 4.48 -850.26 -3.81 -27.13 16 10 C 0.21 11.28 3.87 85.56 0.33 11.61 16 11 C -0.53 -30.14 8.49 25.60 0.22 -29.92 16 12 H 0.06 3.41 7.14 -2.91 -0.02 3.39 16 13 C 0.00 0.14 5.46 84.66 0.46 0.60 16 14 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 15 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 20 H 0.06 1.39 6.43 -2.39 -0.02 1.37 16 21 H 0.07 1.48 6.51 -2.39 -0.02 1.46 16 22 H 0.04 1.63 6.18 -2.39 -0.01 1.61 16 23 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.03 1.20 6.70 -2.39 -0.02 1.19 16 25 H 0.05 1.81 6.07 -2.39 -0.01 1.79 16 26 H 0.08 2.40 6.43 -2.39 -0.02 2.38 16 27 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.12 2.79 6.62 -2.38 -0.02 2.78 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.12 2.93 8.14 -2.38 -0.02 2.91 16 31 H 0.07 3.12 6.82 -2.39 -0.02 3.10 16 32 H 0.02 0.87 6.39 -2.38 -0.02 0.86 16 33 H -0.04 -2.40 6.90 -2.39 -0.02 -2.42 16 34 H 0.02 0.89 5.76 -2.38 -0.01 0.87 16 35 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -64.77 262.71 1.70 -63.07 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.06 Total: 8.05 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 3.67 Total: -20.17 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -3.52 Total: -83.61 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -1.53 Total: -14.00 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -64.77 1.70 -63.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336354193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.233 kcal (2) G-P(sol) polarization free energy of solvation -64.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds