Wall clock time and date at job start Sun Mar 29 2020 22:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 O 1.42900 * 109.52245 * 64.87075 * 3 2 1 5 5 C 1.53119 * 109.51885 * 304.67956 * 3 2 1 6 6 C 1.53036 * 109.27619 * 182.44047 * 5 3 2 7 7 N 1.46850 * 109.52283 * 59.18344 * 6 5 3 8 8 C 1.46901 * 111.00077 * 174.16068 * 7 6 5 9 9 C 1.50700 * 109.46984 * 294.20787 * 8 7 6 10 10 H 1.07993 * 119.99948 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99928 * 179.97438 * 9 8 7 12 12 N 1.31521 * 120.00013 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00194 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46505 * 90.00335 * 13 11 9 15 15 H 1.48496 * 109.47241 * 210.00315 * 13 11 9 16 16 H 1.48502 * 109.46839 * 330.00613 * 13 11 9 17 17 C 1.46852 * 111.19451 * 298.25471 * 7 6 5 18 18 C 1.53033 * 109.52383 * 61.74547 * 17 7 6 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 23 23 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 24 24 H 0.96700 * 114.00009 * 300.00059 * 4 3 2 25 25 H 1.08997 * 109.50708 * 302.37906 * 5 3 2 26 26 H 1.08995 * 109.50206 * 62.50280 * 5 3 2 27 27 H 1.08997 * 109.46529 * 299.16616 * 6 5 3 28 28 H 1.08997 * 109.46598 * 179.19457 * 6 5 3 29 29 H 1.09004 * 109.46982 * 54.20616 * 8 7 6 30 30 H 1.08998 * 109.47380 * 174.20150 * 8 7 6 31 31 H 0.96997 * 120.00018 * 179.97438 * 12 11 9 32 32 H 1.08997 * 109.46115 * 301.72471 * 17 7 6 33 33 H 1.09001 * 109.45101 * 181.75424 * 17 7 6 34 34 H 1.08998 * 109.50400 * 180.87890 * 18 17 7 35 35 H 1.08996 * 109.50274 * 60.75714 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.6599 2.0834 1.2194 5 6 1.4363 2.1986 -1.1868 6 6 1.9970 3.6223 -1.2168 7 7 3.4595 3.5713 -1.3387 8 6 4.0208 4.9180 -1.5097 9 6 3.5654 5.4883 -2.8282 10 1 2.9237 4.9082 -3.4746 11 6 3.9682 6.7507 -3.2092 12 7 4.7502 7.4570 -2.4222 13 14 3.4043 7.4574 -4.8439 14 1 2.1286 8.1928 -4.6514 15 1 4.4383 8.3876 -5.3641 16 1 3.1976 6.3535 -5.8154 17 6 4.0649 2.8912 -0.1865 18 6 3.5661 1.4457 -0.1257 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 0.7044 2.1191 1.3637 25 1 1.6941 1.6864 -2.1138 26 1 0.3522 2.2366 -1.0806 27 1 1.7271 4.1384 -0.2955 28 1 1.5801 4.1589 -2.0690 29 1 3.6781 5.5602 -0.6983 30 1 5.1093 4.8627 -1.4942 31 1 5.0338 8.3449 -2.6904 32 1 3.7853 3.4108 0.7299 33 1 5.1499 2.8968 -0.2907 34 1 4.0034 0.9459 0.7385 35 1 3.8573 0.9217 -1.0360 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336398828.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:22 Heat of formation + Delta-G solvation = -87.444121 kcal Electronic energy + Delta-G solvation = -15023.509481 eV Core-core repulsion = 12633.686032 eV Total energy + Delta-G solvation = -2389.823449 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.70639 -37.57673 -34.88683 -33.91140 -32.09653 -31.44871 -28.61909 -25.78349 -24.39976 -23.32310 -21.80752 -20.63461 -18.48335 -17.38015 -17.14173 -16.40681 -15.92887 -15.44229 -15.23570 -15.13565 -14.62826 -14.14753 -13.80347 -13.43653 -13.25912 -12.84077 -12.81061 -12.62089 -12.43547 -12.29159 -12.20235 -11.99998 -11.78856 -11.76035 -11.31694 -10.95863 -10.63220 -10.49992 -9.00401 -8.21718 -6.32908 1.39857 1.42132 1.53940 2.39440 3.09907 3.25308 3.46625 3.78376 3.87588 3.94588 4.33139 4.38491 4.44543 4.58688 4.61246 4.67255 4.70906 4.93481 4.98775 5.05178 5.09465 5.12131 5.16818 5.20284 5.24237 5.34125 5.42819 5.51150 5.64352 6.03928 6.35796 6.64695 6.83793 6.92667 7.37064 8.89916 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.051794 B = 0.007292 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.478366 B = 3839.067390 C = 4117.996178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.139 4.139 3 C 0.133 3.867 4 O -0.574 6.574 5 C -0.131 4.131 6 C 0.068 3.932 7 N -0.540 5.540 8 C 0.207 3.793 9 C -0.523 4.523 10 H 0.065 0.935 11 C -0.002 4.002 12 N -0.937 5.937 13 Si 0.974 3.026 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.262 1.262 17 C 0.056 3.944 18 C -0.095 4.095 19 H 0.068 0.932 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.383 0.617 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.009 0.991 28 H 0.059 0.941 29 H -0.046 1.046 30 H 0.001 0.999 31 H 0.265 0.735 32 H 0.011 0.989 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.750 -14.451 3.843 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C 0.093 3.907 4 O -0.382 6.382 5 C -0.169 4.169 6 C -0.060 4.060 7 N -0.265 5.265 8 C 0.080 3.920 9 C -0.562 4.562 10 H 0.083 0.917 11 C -0.199 4.199 12 N -0.578 5.578 13 Si 0.798 3.202 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.187 1.187 17 C -0.072 4.072 18 C -0.132 4.132 19 H 0.087 0.913 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.232 0.768 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.027 0.973 28 H 0.077 0.923 29 H -0.029 1.029 30 H 0.019 0.981 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.902 -14.510 3.500 16.889 hybrid contribution -0.523 1.426 0.122 1.524 sum -8.425 -13.084 3.623 15.978 Atomic orbital electron populations 1.21860 0.94459 1.02806 1.02293 1.22093 0.97450 0.94904 1.03221 1.21273 0.94246 0.91813 0.83366 1.86546 1.29181 1.81706 1.40804 1.22299 1.00529 0.94438 0.99597 1.21860 0.88017 0.97440 0.98655 1.62040 1.05355 1.19672 1.39396 1.19363 0.93587 0.84195 0.94831 1.21457 1.30378 1.00386 1.03939 0.91692 1.26001 0.95107 0.97295 1.01530 1.70109 1.36333 1.12069 1.39248 0.85315 0.77983 0.78211 0.78701 1.19708 1.20628 1.18659 1.21996 0.98440 0.95760 0.91051 1.21579 0.93893 0.94903 1.02858 0.91336 0.92093 0.92105 0.90997 0.90421 0.76814 0.90423 0.89212 0.97317 0.92270 1.02862 0.98074 0.92639 0.97027 0.92340 0.90134 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.22 71.98 0.66 -1.70 16 2 C -0.14 -2.62 5.23 30.60 0.16 -2.46 16 3 C 0.13 3.50 0.74 -10.71 -0.01 3.49 16 4 O -0.57 -15.99 11.84 -148.98 -1.76 -17.76 16 5 C -0.13 -3.80 4.51 30.65 0.14 -3.66 16 6 C 0.07 2.80 5.16 86.32 0.45 3.25 16 7 N -0.54 -25.05 4.65 -900.92 -4.19 -29.24 16 8 C 0.21 11.81 4.72 85.56 0.40 12.22 16 9 C -0.52 -30.84 8.43 25.60 0.22 -30.63 16 10 H 0.06 3.72 7.12 -2.91 -0.02 3.70 16 11 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 12 N -0.94 -58.31 13.29 21.45 0.28 -58.03 16 13 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 17 C 0.06 2.24 5.33 86.32 0.46 2.70 16 18 C -0.09 -2.84 5.11 30.65 0.16 -2.68 16 19 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 20 H 0.06 0.94 6.41 -2.39 -0.02 0.92 16 21 H 0.06 0.82 6.89 -2.38 -0.02 0.81 16 22 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.38 7.73 7.53 -74.06 -0.56 7.17 16 25 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.09 2.12 6.51 -2.39 -0.02 2.10 16 27 H 0.01 0.37 7.76 -2.39 -0.02 0.36 16 28 H 0.06 2.63 6.70 -2.39 -0.02 2.61 16 29 H -0.05 -2.91 8.12 -2.38 -0.02 -2.93 16 30 H 0.00 0.07 7.99 -2.39 -0.02 0.05 16 31 H 0.26 15.40 8.31 -92.71 -0.77 14.62 16 32 H 0.01 0.50 7.76 -2.39 -0.02 0.48 16 33 H 0.06 2.35 8.02 -2.39 -0.02 2.33 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -68.69 272.51 -0.04 -68.73 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.50 Total: 8.27 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 3.10 Total: -19.12 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -3.90 Total: -87.27 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -1.76 Total: -17.76 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -68.69 -0.04 -68.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336398828.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.710 kcal (2) G-P(sol) polarization free energy of solvation -68.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds