Wall clock time and date at job start Sun Mar 29 2020 22:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47097 * 2 1 4 4 O 1.42902 * 109.47251 * 120.00229 * 2 1 3 5 5 C 1.52995 * 109.46968 * 240.00037 * 2 1 3 6 6 H 1.08999 * 110.59727 * 291.15659 * 5 2 1 7 7 C 1.54937 * 110.67060 * 54.16321 * 5 2 1 8 8 C 1.54592 * 102.92372 * 155.84457 * 7 5 2 9 9 C 1.53997 * 105.14288 * 338.04397 * 8 7 5 10 10 N 1.47902 * 107.05605 * 358.77592 * 9 8 7 11 11 C 1.46899 * 111.00193 * 145.84373 * 10 9 8 12 12 C 1.50695 * 109.46968 * 58.17508 * 11 10 9 13 13 H 1.07997 * 120.00428 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00084 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99715 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00190 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47407 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47250 * 119.99782 * 16 14 12 19 19 H 1.48500 * 109.47395 * 239.99714 * 16 14 12 20 20 H 1.09000 * 109.47257 * 54.86224 * 1 2 3 21 21 H 1.08996 * 109.47278 * 294.86204 * 1 2 3 22 22 H 1.09000 * 109.47049 * 174.86023 * 1 2 3 23 23 H 1.09003 * 109.46817 * 60.00266 * 3 2 1 24 24 H 1.09002 * 109.47254 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47636 * 299.99940 * 3 2 1 26 26 H 0.96697 * 114.00076 * 59.99625 * 4 2 1 27 27 H 1.08993 * 110.72405 * 274.20617 * 7 5 2 28 28 H 1.08997 * 110.72066 * 37.48822 * 7 5 2 29 29 H 1.09007 * 110.30636 * 96.95963 * 8 7 5 30 30 H 1.08998 * 110.31378 * 219.12472 * 8 7 5 31 31 H 1.09001 * 109.91551 * 118.12205 * 9 8 7 32 32 H 1.08992 * 109.91906 * 239.22368 * 9 8 7 33 33 H 1.09001 * 109.46949 * 178.17226 * 11 10 9 34 34 H 1.09004 * 109.46811 * 298.17611 * 11 10 9 35 35 H 0.97001 * 119.99763 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0399 -0.7212 -1.2492 6 1 1.8206 -1.7874 -1.1928 7 6 1.4220 -0.1027 -2.5284 8 6 2.4521 -0.4685 -3.6216 9 6 3.7674 -0.7287 -2.8641 10 7 3.4962 -0.4910 -1.4297 11 6 4.2818 -1.4027 -0.5873 12 6 5.7488 -1.2154 -0.8766 13 1 6.0659 -0.4918 -1.6130 14 6 6.6862 -1.9685 -0.2020 15 7 6.3000 -2.8507 0.6936 16 14 8.5046 -1.7368 -0.5612 17 1 8.6744 -0.6917 -1.6024 18 1 9.2047 -1.3172 0.6793 19 1 9.0806 -3.0170 -1.0457 20 1 -0.3634 0.5915 -0.8404 21 1 -0.3633 0.4320 0.9324 22 1 -0.3633 -1.0235 -0.0921 23 1 1.6766 1.9563 0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.7210 -1.5952 1.2329 27 1 0.4533 -0.5527 -2.7451 28 1 1.3326 0.9790 -2.4292 29 1 2.1372 -1.3669 -4.1526 30 1 2.5746 0.3604 -4.3186 31 1 4.0854 -1.7602 -3.0158 32 1 4.5404 -0.0462 -3.2170 33 1 4.0879 -1.1847 0.4630 34 1 3.9974 -2.4326 -0.8032 35 1 6.9594 -3.3808 1.1679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336616619.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:03 Heat of formation + Delta-G solvation = -55.505069 kcal Electronic energy + Delta-G solvation = -15343.747524 eV Core-core repulsion = 12955.309056 eV Total energy + Delta-G solvation = -2388.438468 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.17775 -36.18301 -33.17327 -31.85307 -30.70801 -27.42585 -26.94840 -26.11658 -22.69950 -21.57060 -19.86399 -18.94061 -16.45612 -15.97282 -15.43902 -14.92575 -14.30022 -14.09228 -13.25775 -13.08444 -12.72807 -12.22577 -12.12095 -11.87103 -11.70613 -11.49812 -11.19489 -11.13285 -10.93373 -10.64239 -10.55330 -10.38094 -10.06236 -10.01247 -9.73893 -9.42043 -8.85335 -8.36171 -7.21536 -5.95826 -3.95906 3.34211 3.41493 3.46235 4.47807 4.63435 4.90196 5.16932 5.23932 5.38800 5.42000 5.43421 5.55918 5.69482 5.80915 5.90895 5.97965 6.15760 6.18583 6.21117 6.32184 6.36698 6.51155 6.63979 6.74536 6.77898 7.02541 7.38007 7.46215 7.86906 8.18294 8.24710 8.31262 8.61529 9.12257 9.67416 11.15386 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.035905 B = 0.009715 C = 0.008414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.639649 B = 2881.482247 C = 3327.005895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.143 3.857 3 C -0.126 4.126 4 O -0.548 6.548 5 C 0.038 3.962 6 H 0.042 0.958 7 C -0.116 4.116 8 C -0.134 4.134 9 C 0.049 3.951 10 N -0.501 5.501 11 C 0.181 3.819 12 C -0.507 4.507 13 H 0.060 0.940 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.286 1.286 20 H 0.063 0.937 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.368 0.632 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.054 0.946 34 H -0.017 1.017 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.010 4.469 -4.575 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.102 3.898 3 C -0.183 4.183 4 O -0.353 6.353 5 C -0.072 4.072 6 H 0.060 0.940 7 C -0.154 4.154 8 C -0.172 4.172 9 C -0.079 4.079 10 N -0.226 5.226 11 C 0.056 3.944 12 C -0.546 4.546 13 H 0.078 0.922 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.212 1.212 20 H 0.082 0.918 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.215 0.785 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.001 0.999 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.490 5.450 -4.185 12.540 hybrid contribution 0.584 -1.541 -0.512 1.726 sum -9.905 3.908 -4.697 11.639 Atomic orbital electron populations 1.22527 0.96890 1.01764 1.02216 1.21034 0.90666 0.93762 0.84328 1.21587 1.04306 0.92426 0.99955 1.86648 1.77178 1.28138 1.43354 1.23384 0.92186 0.96976 0.94654 0.94034 1.22540 0.97289 1.01050 0.94565 1.22470 0.96395 1.00540 0.97828 1.22616 0.95510 1.00119 0.89651 1.64810 1.01172 1.52638 1.03936 1.20022 0.92078 0.88099 0.94224 1.21235 0.90884 1.20560 1.21946 0.92160 1.24969 0.99005 0.95368 0.95256 1.69975 1.33708 1.24200 1.25758 0.86499 0.85363 0.77763 0.78126 1.19771 1.21038 1.21235 0.91796 0.92158 0.92945 0.93698 0.89707 0.92169 0.78539 0.92206 0.90831 0.92506 0.91904 0.93998 0.91333 0.92778 0.99903 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 8.39 37.16 0.31 -1.94 16 2 C 0.14 2.37 1.00 -90.62 -0.09 2.28 16 3 C -0.13 -2.10 8.38 37.16 0.31 -1.78 16 4 O -0.55 -10.37 11.04 -35.23 -0.39 -10.76 16 5 C 0.04 0.67 1.95 -65.78 -0.13 0.54 16 6 H 0.04 0.78 7.94 -51.93 -0.41 0.37 16 7 C -0.12 -1.70 5.08 -24.87 -0.13 -1.83 16 8 C -0.13 -2.06 6.93 -25.37 -0.18 -2.24 16 9 C 0.05 0.98 5.63 -2.75 -0.02 0.97 16 10 N -0.50 -10.91 3.87 -224.06 -0.87 -11.77 16 11 C 0.18 4.81 4.33 -4.98 -0.02 4.79 16 12 C -0.51 -14.61 8.58 -34.44 -0.30 -14.91 16 13 H 0.06 1.72 7.15 -52.49 -0.38 1.35 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 16 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H 0.06 0.73 7.31 -51.93 -0.38 0.35 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 1.70 7.39 -51.93 -0.38 1.32 16 25 H 0.06 0.87 6.41 -51.93 -0.33 0.54 16 26 H 0.37 5.91 9.05 45.56 0.41 6.32 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.02 6.22 -51.93 -0.32 0.70 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.91 7.70 -51.93 -0.40 0.51 16 32 H 0.07 1.39 7.85 -51.93 -0.41 0.98 16 33 H 0.05 1.56 6.41 -51.93 -0.33 1.23 16 34 H -0.02 -0.48 8.00 -51.93 -0.42 -0.90 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 273.38 15.07 4.12 4.12 Total: -1.00 -31.23 273.38 -6.77 -38.00 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.02 Total: 2.36 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -0.33 Total: -12.61 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.13 Total: -38.25 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -0.39 Total: -10.76 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.23 -6.77 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336616619.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.510 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds