Wall clock time and date at job start Sun Mar 29 2020 22:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47097 * 2 1 4 4 O 1.42902 * 109.47251 * 120.00229 * 2 1 3 5 5 C 1.52995 * 109.46968 * 240.00037 * 2 1 3 6 6 H 1.08999 * 110.59727 * 291.15659 * 5 2 1 7 7 C 1.54937 * 110.67060 * 54.16321 * 5 2 1 8 8 C 1.54592 * 102.92372 * 155.84457 * 7 5 2 9 9 C 1.53997 * 105.14288 * 338.04397 * 8 7 5 10 10 N 1.47902 * 107.05605 * 358.77592 * 9 8 7 11 11 C 1.46899 * 111.00193 * 145.84373 * 10 9 8 12 12 C 1.50695 * 109.46968 * 58.17508 * 11 10 9 13 13 H 1.07997 * 120.00428 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00084 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99715 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00190 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47407 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47250 * 119.99782 * 16 14 12 19 19 H 1.48500 * 109.47395 * 239.99714 * 16 14 12 20 20 H 1.09000 * 109.47257 * 54.86224 * 1 2 3 21 21 H 1.08996 * 109.47278 * 294.86204 * 1 2 3 22 22 H 1.09000 * 109.47049 * 174.86023 * 1 2 3 23 23 H 1.09003 * 109.46817 * 60.00266 * 3 2 1 24 24 H 1.09002 * 109.47254 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47636 * 299.99940 * 3 2 1 26 26 H 0.96697 * 114.00076 * 59.99625 * 4 2 1 27 27 H 1.08993 * 110.72405 * 274.20617 * 7 5 2 28 28 H 1.08997 * 110.72066 * 37.48822 * 7 5 2 29 29 H 1.09007 * 110.30636 * 96.95963 * 8 7 5 30 30 H 1.08998 * 110.31378 * 219.12472 * 8 7 5 31 31 H 1.09001 * 109.91551 * 118.12205 * 9 8 7 32 32 H 1.08992 * 109.91906 * 239.22368 * 9 8 7 33 33 H 1.09001 * 109.46949 * 178.17226 * 11 10 9 34 34 H 1.09004 * 109.46811 * 298.17611 * 11 10 9 35 35 H 0.97001 * 119.99763 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0399 -0.7212 -1.2492 6 1 1.8206 -1.7874 -1.1928 7 6 1.4220 -0.1027 -2.5284 8 6 2.4521 -0.4685 -3.6216 9 6 3.7674 -0.7287 -2.8641 10 7 3.4962 -0.4910 -1.4297 11 6 4.2818 -1.4027 -0.5873 12 6 5.7488 -1.2154 -0.8766 13 1 6.0659 -0.4918 -1.6130 14 6 6.6862 -1.9685 -0.2020 15 7 6.3000 -2.8507 0.6936 16 14 8.5046 -1.7368 -0.5612 17 1 8.6744 -0.6917 -1.6024 18 1 9.2047 -1.3172 0.6793 19 1 9.0806 -3.0170 -1.0457 20 1 -0.3634 0.5915 -0.8404 21 1 -0.3633 0.4320 0.9324 22 1 -0.3633 -1.0235 -0.0921 23 1 1.6766 1.9563 0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.7210 -1.5952 1.2329 27 1 0.4533 -0.5527 -2.7451 28 1 1.3326 0.9790 -2.4292 29 1 2.1372 -1.3669 -4.1526 30 1 2.5746 0.3604 -4.3186 31 1 4.0854 -1.7602 -3.0158 32 1 4.5404 -0.0462 -3.2170 33 1 4.0879 -1.1847 0.4630 34 1 3.9974 -2.4326 -0.8032 35 1 6.9594 -3.3808 1.1679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336616619.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:02 Heat of formation + Delta-G solvation = -78.603146 kcal Electronic energy + Delta-G solvation = -15344.749132 eV Core-core repulsion = 12955.309056 eV Total energy + Delta-G solvation = -2389.440076 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.63015 -37.65122 -35.20882 -33.40955 -32.35648 -28.88162 -28.32460 -27.89774 -24.58066 -23.02273 -21.46073 -20.35296 -18.31588 -17.74576 -17.07322 -16.49877 -15.99769 -15.49897 -14.80231 -14.63847 -14.33184 -13.93900 -13.57444 -13.37137 -13.20230 -12.84550 -12.84308 -12.64057 -12.46546 -12.34490 -12.30134 -11.89002 -11.74470 -11.46712 -11.29518 -11.18729 -10.66211 -10.47655 -9.01005 -8.20677 -6.29650 1.36566 1.38010 1.51084 2.38750 3.11989 3.27239 3.50111 3.84166 3.94314 4.12750 4.19563 4.27213 4.34165 4.55366 4.72632 4.85185 4.91449 4.96939 5.00249 5.06530 5.11777 5.14830 5.19481 5.28493 5.31373 5.43513 5.52673 5.61888 5.68464 6.07359 6.36708 6.63428 6.88255 6.93982 7.39398 8.91034 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.035905 B = 0.009715 C = 0.008414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.639649 B = 2881.482247 C = 3327.005895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 C -0.123 4.123 4 O -0.578 6.578 5 C 0.031 3.969 6 H 0.027 0.973 7 C -0.105 4.105 8 C -0.124 4.124 9 C 0.044 3.956 10 N -0.510 5.510 11 C 0.204 3.796 12 C -0.527 4.527 13 H 0.057 0.943 14 C 0.000 4.000 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.277 1.277 20 H 0.087 0.913 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.375 0.625 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.012 0.988 32 H 0.059 0.941 33 H 0.025 0.975 34 H -0.051 1.051 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 5.626 -5.989 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.095 3.905 3 C -0.180 4.180 4 O -0.384 6.384 5 C -0.078 4.078 6 H 0.045 0.955 7 C -0.143 4.143 8 C -0.162 4.162 9 C -0.084 4.084 10 N -0.233 5.233 11 C 0.077 3.923 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.198 4.198 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.203 1.203 20 H 0.106 0.894 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.223 0.777 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.043 0.957 34 H -0.034 1.034 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.696 6.615 -5.614 14.562 hybrid contribution 0.934 -1.905 -0.059 2.123 sum -10.762 4.710 -5.673 13.045 Atomic orbital electron populations 1.22403 0.93153 1.03032 1.03606 1.21293 0.93403 0.93032 0.82807 1.21577 1.01528 0.93115 1.01761 1.86612 1.78173 1.28914 1.44716 1.23572 0.89808 0.96875 0.97547 0.95462 1.22566 0.98144 1.01922 0.91665 1.22431 0.93532 1.02295 0.97957 1.22653 0.98351 0.98116 0.89324 1.64699 1.03429 1.50860 1.04362 1.19548 0.92152 0.87031 0.93539 1.21561 0.92354 1.20615 1.21999 0.92477 1.25912 1.04129 0.94881 0.94885 1.70104 1.35486 1.25003 1.26652 0.85372 0.79094 0.78142 0.78238 1.18866 1.20375 1.20253 0.89407 0.91561 0.91957 0.92765 0.93942 0.89488 0.77734 0.88859 0.89338 0.91060 0.89375 0.96919 0.92256 0.95741 1.03393 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 8.39 71.98 0.60 -3.08 16 2 C 0.14 4.34 1.00 -10.80 -0.01 4.33 16 3 C -0.12 -3.96 8.38 71.98 0.60 -3.36 16 4 O -0.58 -22.46 11.04 -148.98 -1.64 -24.10 16 5 C 0.03 1.09 1.95 45.26 0.09 1.18 16 6 H 0.03 1.04 7.94 -2.39 -0.02 1.02 16 7 C -0.11 -2.69 5.08 31.80 0.16 -2.53 16 8 C -0.12 -3.47 6.93 31.47 0.22 -3.25 16 9 C 0.04 1.76 5.63 86.45 0.49 2.25 16 10 N -0.51 -22.69 3.87 -862.78 -3.34 -26.03 16 11 C 0.20 11.42 4.33 85.56 0.37 11.79 16 12 C -0.53 -31.44 8.58 25.60 0.22 -31.22 16 13 H 0.06 3.36 7.15 -2.91 -0.02 3.34 16 14 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 15 N -0.93 -58.29 13.29 21.45 0.28 -58.00 16 16 Si 0.97 46.17 29.54 68.60 2.03 48.19 16 17 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 20 H 0.09 1.57 7.31 -2.39 -0.02 1.55 16 21 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.04 1.72 7.39 -2.39 -0.02 1.70 16 25 H 0.09 2.27 6.41 -2.39 -0.02 2.26 16 26 H 0.38 12.64 9.05 -74.06 -0.67 11.97 16 27 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.09 2.04 6.22 -2.39 -0.01 2.02 16 29 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.01 0.56 7.70 -2.39 -0.02 0.54 16 32 H 0.06 2.43 7.85 -2.39 -0.02 2.41 16 33 H 0.02 1.50 6.41 -2.39 -0.02 1.49 16 34 H -0.05 -3.15 8.00 -2.38 -0.02 -3.17 16 35 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -70.36 273.38 0.92 -69.43 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.39 Total: 13.96 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 3.20 Total: -23.45 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -3.05 Total: -84.03 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -1.64 Total: -24.10 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -70.36 0.92 -69.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336616619.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.168 kcal (2) G-P(sol) polarization free energy of solvation -70.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds