Wall clock time and date at job start Sun Mar 29 2020 22:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99888 * 2 1 4 4 H 1.48499 * 109.46885 * 239.99859 * 3 2 1 5 5 H 1.48499 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47098 * 120.00119 * 3 2 1 7 7 C 1.37876 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00072 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47135 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99942 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47226 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.46861 * 62.29568 * 12 11 10 14 14 C 1.46852 * 111.00050 * 52.14350 * 13 12 11 15 15 C 1.53038 * 109.52303 * 185.83882 * 14 13 12 16 16 C 1.53125 * 109.27674 * 300.82177 * 15 14 13 17 17 C 1.53113 * 109.16125 * 57.65489 * 16 15 14 18 18 C 1.46849 * 111.00198 * 176.35281 * 13 12 11 19 19 H 0.96996 * 119.99959 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47352 * 59.99555 * 9 7 2 21 21 H 1.09003 * 109.46911 * 299.99871 * 9 7 2 22 22 H 1.09000 * 109.46910 * 60.00088 * 11 10 9 23 23 H 1.08999 * 109.46985 * 300.00302 * 11 10 9 24 24 H 1.08995 * 109.46854 * 302.29365 * 12 11 10 25 25 H 1.08997 * 109.46895 * 182.29462 * 12 11 10 26 26 H 1.08994 * 109.46163 * 65.82698 * 14 13 12 27 27 H 1.08997 * 109.46106 * 305.85442 * 14 13 12 28 28 H 1.08996 * 109.50349 * 180.88015 * 15 14 13 29 29 H 1.09003 * 109.50308 * 60.76036 * 15 14 13 30 30 H 1.09000 * 109.52208 * 177.55848 * 16 15 14 31 31 H 1.09001 * 109.52439 * 297.74451 * 16 15 14 32 32 H 1.09008 * 109.50523 * 62.28814 * 17 16 15 33 33 H 1.09000 * 109.50513 * 182.39852 * 17 16 15 34 34 H 1.09001 * 109.45725 * 54.14358 * 18 13 12 35 35 H 1.09005 * 109.46195 * 294.18167 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 7 3.4505 -5.8462 1.2260 14 6 2.5921 -5.8324 2.4174 15 6 3.4462 -5.5714 3.6602 16 6 4.5065 -6.6692 3.7846 17 6 5.3558 -6.6942 2.5109 18 6 4.4464 -6.9227 1.3015 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 0.9448 -4.9827 -0.8886 23 1 0.9453 -4.9821 0.8913 24 1 3.2925 -5.8243 -0.8688 25 1 2.1799 -6.9396 -0.0403 26 1 2.0924 -6.7960 2.5162 27 1 1.8454 -5.0447 2.3180 28 1 2.8111 -5.5767 4.5459 29 1 3.9355 -4.6016 3.5683 30 1 5.1447 -6.4635 4.6440 31 1 4.0176 -7.6346 3.9155 32 1 5.8752 -5.7421 2.4009 33 1 6.0851 -7.5017 2.5756 34 1 5.0463 -6.9268 0.3915 35 1 3.9379 -7.8813 1.4054 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378771034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:12 Heat of formation + Delta-G solvation = -78.797248 kcal Electronic energy + Delta-G solvation = -14574.095897 eV Core-core repulsion = 12184.647404 eV Total energy + Delta-G solvation = -2389.448493 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.11503 -38.29535 -35.16097 -34.42538 -31.79086 -30.35918 -28.68821 -25.33354 -24.46960 -23.91739 -22.16099 -20.55134 -18.61287 -17.59448 -17.37237 -16.48374 -16.02467 -15.76890 -15.43563 -15.13744 -14.87724 -14.32594 -14.06321 -13.67143 -13.53249 -13.01131 -12.93092 -12.77345 -12.46890 -12.29072 -12.10434 -11.91886 -11.57912 -11.30522 -11.23990 -11.09064 -10.83345 -10.17893 -9.11250 -8.31747 -6.43891 1.39262 1.44464 1.52864 2.35133 2.95033 3.01700 3.25316 3.91704 3.94220 4.03466 4.18019 4.24595 4.36384 4.42363 4.52357 4.61254 4.67646 4.69227 4.81747 4.88784 4.95094 4.99224 5.06909 5.10812 5.18545 5.24982 5.34159 5.51086 5.55539 5.97306 6.19021 6.30451 6.56669 6.85591 7.28266 8.80519 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039031 B = 0.006534 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.210625 B = 4284.276411 C = 4562.758364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.210 3.790 10 O -0.394 6.394 11 C 0.051 3.949 12 C 0.070 3.930 13 N -0.553 5.553 14 C 0.054 3.946 15 C -0.118 4.118 16 C -0.114 4.114 17 C -0.115 4.115 18 C 0.055 3.945 19 H 0.271 0.729 20 H -0.016 1.016 21 H -0.018 1.018 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.176 -14.596 5.121 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.313 6.313 11 C -0.026 4.026 12 C -0.058 4.058 13 N -0.278 5.278 14 C -0.074 4.074 15 C -0.156 4.156 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.072 4.072 19 H 0.080 0.920 20 H 0.001 0.999 21 H -0.001 1.001 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.468 -14.023 5.098 16.686 hybrid contribution -0.884 0.200 -0.142 0.917 sum 6.584 -13.823 4.956 16.094 Atomic orbital electron populations 1.70064 1.07741 1.28687 1.50575 1.25962 0.95971 1.03356 0.93897 0.85245 0.78126 0.76734 0.79372 1.18978 1.19773 1.19121 1.21347 0.94008 0.90923 1.52177 0.92255 1.19784 0.88659 0.85024 0.93091 1.87924 1.34599 1.13764 1.95036 1.22698 0.95685 0.84777 0.99456 1.22052 0.94635 0.95616 0.93478 1.61775 1.16907 1.47387 1.01766 1.22103 0.95217 0.99551 0.90522 1.21581 0.98057 0.99436 0.96481 1.21551 0.97192 0.98359 0.98023 1.21591 0.97688 1.02282 0.93756 1.22153 0.93962 0.91384 0.99693 0.92037 0.99873 1.00074 0.93484 0.94107 0.90251 0.91468 0.94098 0.92898 0.90652 0.93323 0.90751 0.91205 0.92767 0.89346 0.90615 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.98 45.53 29.54 68.60 2.03 47.56 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.55 -33.84 9.43 25.60 0.24 -33.59 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 9 C 0.21 12.28 5.69 71.24 0.41 12.69 16 10 O -0.39 -20.29 10.23 -148.98 -1.52 -21.82 16 11 C 0.05 1.99 5.57 71.98 0.40 2.39 16 12 C 0.07 2.16 5.52 86.31 0.48 2.63 16 13 N -0.55 -17.36 4.67 -896.38 -4.18 -21.55 16 14 C 0.05 1.62 5.05 86.32 0.44 2.05 16 15 C -0.12 -3.12 6.09 30.65 0.19 -2.93 16 16 C -0.11 -2.32 6.00 30.67 0.18 -2.13 16 17 C -0.12 -2.44 6.09 30.64 0.19 -2.25 16 18 C 0.06 1.31 5.46 86.32 0.47 1.78 16 19 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 20 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 21 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 22 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.04 1.57 6.05 -2.39 -0.01 1.55 16 24 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.91 5.79 -2.39 -0.01 1.90 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16 35 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -68.57 281.34 1.08 -67.49 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.03 Total: 3.81 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 3.45 Total: -18.52 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -3.90 Total: -78.52 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -1.52 Total: -21.82 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -68.57 1.08 -67.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378771034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.311 kcal (2) G-P(sol) polarization free energy of solvation -68.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds