Wall clock time and date at job start Sun Mar 29 2020 22:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 C 1.53000 * 109.46893 * 2 1 4 4 C 1.52996 * 109.47053 * 180.02562 * 3 2 1 5 5 N 1.46904 * 110.45688 * 307.60356 * 4 3 2 6 6 C 1.46893 * 110.99760 * 302.05614 * 5 4 3 7 7 C 1.50705 * 109.46868 * 185.41055 * 6 5 4 8 8 H 1.07994 * 120.00133 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99891 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00133 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99969 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46810 * 60.00493 * 11 9 7 13 13 H 1.48499 * 109.46987 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47281 * 300.00108 * 11 9 7 15 15 C 1.54507 * 110.51058 * 185.00102 * 4 3 2 16 16 C 1.54487 * 104.06252 * 241.35407 * 15 4 3 17 17 O 1.44428 * 104.79887 * 23.97646 * 16 15 4 18 18 C 1.44419 * 105.27960 * 319.48735 * 17 16 15 19 19 H 1.09004 * 109.46718 * 299.99707 * 1 2 3 20 20 H 1.08991 * 109.47041 * 60.00047 * 1 2 3 21 21 H 1.08998 * 109.46921 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46957 * 239.99836 * 2 1 3 23 23 H 1.09001 * 109.47029 * 119.99949 * 2 1 3 24 24 H 1.09001 * 109.46759 * 300.00040 * 3 2 1 25 25 H 1.08999 * 109.46994 * 59.99876 * 3 2 1 26 26 H 1.00906 * 110.99588 * 66.01204 * 5 4 3 27 27 H 1.08991 * 109.47447 * 305.41426 * 6 5 4 28 28 H 1.09001 * 109.47359 * 65.41442 * 6 5 4 29 29 H 0.97004 * 120.00121 * 179.97438 * 10 9 7 30 30 H 1.08995 * 110.51099 * 359.97438 * 15 4 3 31 31 H 1.08996 * 110.51297 * 122.57325 * 15 4 3 32 32 H 1.08992 * 110.37419 * 142.80668 * 16 15 4 33 33 H 1.09002 * 110.37080 * 265.04207 * 16 15 4 34 34 H 1.08996 * 110.37218 * 281.68284 * 18 17 16 35 35 H 1.08999 * 110.37135 * 159.33877 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0839 0.6025 1.0895 6 6 3.5865 1.0670 2.3912 7 6 4.2367 0.2683 3.4915 8 1 4.9479 -0.5070 3.2480 9 6 3.9235 0.5275 4.8089 10 7 3.0570 1.4713 5.1054 11 14 4.7289 -0.4630 6.1727 12 1 6.2017 -0.2826 6.1119 13 1 4.2261 0.0066 7.4887 14 1 4.3988 -1.9007 6.0016 15 6 4.1114 2.8842 0.1255 16 6 4.9152 3.0985 -1.1762 17 8 4.3461 2.1644 -2.1193 18 6 4.1108 0.9564 -1.3636 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.8514 -0.3677 0.9386 27 1 3.8279 2.1224 2.5170 28 1 2.5056 0.9338 2.4357 29 1 2.8364 1.6534 6.0323 30 1 3.2891 3.5968 0.1879 31 1 4.7604 2.9736 0.9966 32 1 4.7928 4.1208 -1.5339 33 1 5.9700 2.8786 -1.0114 34 1 5.0419 0.4062 -1.2280 35 1 3.3703 0.3333 -1.8651 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378840831.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:20 Heat of formation + Delta-G solvation = -60.875663 kcal Electronic energy + Delta-G solvation = -15037.921801 eV Core-core repulsion = 12649.250446 eV Total energy + Delta-G solvation = -2388.671355 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.59909 -36.07360 -33.37156 -32.23225 -30.13590 -28.84831 -26.06255 -25.56235 -22.99157 -21.78756 -20.83268 -18.58873 -16.76669 -15.96255 -15.48002 -14.93645 -14.80652 -14.57021 -13.94632 -13.46743 -12.74388 -12.66635 -12.39654 -12.03692 -11.79897 -11.49030 -11.26707 -11.13379 -10.90763 -10.69025 -10.56698 -10.29000 -10.21995 -10.16783 -9.76897 -9.37674 -9.18220 -8.47674 -7.32484 -6.03806 -4.05418 3.32360 3.36478 3.39456 4.28965 4.42371 4.90803 5.04848 5.25752 5.30693 5.31962 5.37373 5.44578 5.54403 5.74013 5.76880 5.94661 6.01551 6.08034 6.14120 6.18465 6.25745 6.33246 6.45029 6.54977 6.64858 6.68584 7.05875 7.27928 7.42169 7.78560 8.12877 8.37746 8.59041 9.03398 9.59255 11.06781 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030182 B = 0.008846 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.496177 B = 3164.537024 C = 3679.828958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.138 4.138 4 C 0.085 3.915 5 N -0.674 5.674 6 C 0.193 3.807 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.278 1.278 15 C -0.142 4.142 16 C 0.049 3.951 17 O -0.383 6.383 18 C 0.054 3.946 19 H 0.054 0.946 20 H 0.048 0.952 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.329 0.671 27 H 0.029 0.971 28 H -0.007 1.007 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 0.162 -10.440 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.177 4.177 4 C -0.008 4.008 5 N -0.305 5.305 6 C 0.067 3.933 7 C -0.552 4.552 8 H 0.079 0.921 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.180 4.180 16 C -0.028 4.028 17 O -0.302 6.302 18 C -0.023 4.023 19 H 0.073 0.927 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.047 0.953 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.841 0.639 -10.453 10.506 hybrid contribution -0.557 -0.754 1.140 1.476 sum -1.398 -0.115 -9.313 9.418 Atomic orbital electron populations 1.21717 0.96149 1.01120 1.01475 1.21588 0.95794 0.97220 1.01998 1.22216 0.96385 0.97023 1.02070 1.22210 0.92227 0.94020 0.92332 1.60918 1.62059 1.05115 1.02430 1.19584 0.93491 0.96608 0.83618 1.21158 1.24724 1.18840 0.90503 0.92131 1.24968 0.95284 0.95459 0.98789 1.69949 1.33586 1.31426 1.18750 0.86576 0.79741 0.80270 0.80889 1.20210 1.21385 1.20317 1.22992 1.00374 0.95858 0.98812 1.23362 0.97111 0.93484 0.88824 1.89033 1.83247 1.24252 1.33620 1.23521 1.00265 0.87689 0.90848 0.92653 0.93295 0.93126 0.92552 0.91047 0.92332 0.91135 0.85286 0.95290 0.98887 0.92916 0.91390 0.88962 0.89894 0.92364 0.91549 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.13 -1.98 5.17 -26.72 -0.14 -2.12 16 3 C -0.14 -2.30 3.47 -26.73 -0.09 -2.39 16 4 C 0.08 1.48 0.64 -130.03 -0.08 1.39 16 5 N -0.67 -13.84 5.79 -99.63 -0.58 -14.42 16 6 C 0.19 4.85 4.39 -4.98 -0.02 4.83 16 7 C -0.51 -14.26 9.36 -34.44 -0.32 -14.58 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 11 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 C -0.14 -2.43 5.82 -25.16 -0.15 -2.57 16 16 C 0.05 0.73 7.63 37.94 0.29 1.02 16 17 O -0.38 -6.26 11.65 -35.23 -0.41 -6.67 16 18 C 0.05 0.85 6.72 37.94 0.26 1.10 16 19 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.78 6.73 -51.93 -0.35 0.43 16 23 H 0.07 1.26 6.08 -51.93 -0.32 0.95 16 24 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 25 H 0.07 1.34 7.03 -51.93 -0.37 0.97 16 26 H 0.33 6.49 7.22 -39.29 -0.28 6.21 16 27 H 0.03 0.79 6.54 -51.93 -0.34 0.45 16 28 H -0.01 -0.18 6.22 -51.93 -0.32 -0.50 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 30 H 0.07 1.11 7.73 -51.93 -0.40 0.71 16 31 H 0.09 1.76 6.84 -51.93 -0.36 1.41 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 35 H 0.08 1.20 6.48 -51.93 -0.34 0.87 16 LS Contribution 274.07 15.07 4.13 4.13 Total: -1.00 -29.04 274.07 -6.70 -35.74 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.57 Total: 3.87 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 0.01 Total: -13.50 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.16 Total: -40.11 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.41 Total: -6.67 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.04 -6.70 -35.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378840831.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.137 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds