Wall clock time and date at job start Sun Mar 29 2020 22:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 C 1.53000 * 109.46893 * 2 1 4 4 C 1.52996 * 109.47053 * 180.02562 * 3 2 1 5 5 N 1.46904 * 110.45688 * 307.60356 * 4 3 2 6 6 C 1.46893 * 110.99760 * 302.05614 * 5 4 3 7 7 C 1.50705 * 109.46868 * 185.41055 * 6 5 4 8 8 H 1.07994 * 120.00133 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99891 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00133 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99969 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46810 * 60.00493 * 11 9 7 13 13 H 1.48499 * 109.46987 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47281 * 300.00108 * 11 9 7 15 15 C 1.54507 * 110.51058 * 185.00102 * 4 3 2 16 16 C 1.54487 * 104.06252 * 241.35407 * 15 4 3 17 17 O 1.44428 * 104.79887 * 23.97646 * 16 15 4 18 18 C 1.44419 * 105.27960 * 319.48735 * 17 16 15 19 19 H 1.09004 * 109.46718 * 299.99707 * 1 2 3 20 20 H 1.08991 * 109.47041 * 60.00047 * 1 2 3 21 21 H 1.08998 * 109.46921 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46957 * 239.99836 * 2 1 3 23 23 H 1.09001 * 109.47029 * 119.99949 * 2 1 3 24 24 H 1.09001 * 109.46759 * 300.00040 * 3 2 1 25 25 H 1.08999 * 109.46994 * 59.99876 * 3 2 1 26 26 H 1.00906 * 110.99588 * 66.01204 * 5 4 3 27 27 H 1.08991 * 109.47447 * 305.41426 * 6 5 4 28 28 H 1.09001 * 109.47359 * 65.41442 * 6 5 4 29 29 H 0.97004 * 120.00121 * 179.97438 * 10 9 7 30 30 H 1.08995 * 110.51099 * 359.97438 * 15 4 3 31 31 H 1.08996 * 110.51297 * 122.57325 * 15 4 3 32 32 H 1.08992 * 110.37419 * 142.80668 * 16 15 4 33 33 H 1.09002 * 110.37080 * 265.04207 * 16 15 4 34 34 H 1.08996 * 110.37218 * 281.68284 * 18 17 16 35 35 H 1.08999 * 110.37135 * 159.33877 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0839 0.6025 1.0895 6 6 3.5865 1.0670 2.3912 7 6 4.2367 0.2683 3.4915 8 1 4.9479 -0.5070 3.2480 9 6 3.9235 0.5275 4.8089 10 7 3.0570 1.4713 5.1054 11 14 4.7289 -0.4630 6.1727 12 1 6.2017 -0.2826 6.1119 13 1 4.2261 0.0066 7.4887 14 1 4.3988 -1.9007 6.0016 15 6 4.1114 2.8842 0.1255 16 6 4.9152 3.0985 -1.1762 17 8 4.3461 2.1644 -2.1193 18 6 4.1108 0.9564 -1.3636 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.8514 -0.3677 0.9386 27 1 3.8279 2.1224 2.5170 28 1 2.5056 0.9338 2.4357 29 1 2.8364 1.6534 6.0323 30 1 3.2891 3.5968 0.1879 31 1 4.7604 2.9736 0.9966 32 1 4.7928 4.1208 -1.5339 33 1 5.9700 2.8786 -1.0114 34 1 5.0419 0.4062 -1.2280 35 1 3.3703 0.3333 -1.8651 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378840831.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:19 Heat of formation + Delta-G solvation = -80.646911 kcal Electronic energy + Delta-G solvation = -15038.779146 eV Core-core repulsion = 12649.250446 eV Total energy + Delta-G solvation = -2389.528700 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.96966 -37.52413 -35.18043 -33.90609 -31.68264 -30.28028 -27.83382 -27.02225 -24.40429 -23.58046 -22.14143 -20.06475 -18.69332 -17.40773 -16.96041 -16.64561 -16.33158 -16.03782 -15.26121 -15.08620 -14.36100 -14.10789 -13.84298 -13.62434 -13.41072 -12.98063 -12.89677 -12.63225 -12.46234 -12.38873 -12.11878 -11.91405 -11.62590 -11.57247 -11.30075 -11.21665 -10.65503 -10.62292 -9.07606 -8.19999 -6.30028 1.40609 1.43284 1.51167 2.40104 3.02423 3.13122 3.47811 3.67499 3.88524 3.97981 4.12359 4.22307 4.29315 4.46380 4.51166 4.72558 4.74815 4.84463 4.89651 4.90835 4.96545 5.03452 5.13737 5.15503 5.24564 5.30780 5.38934 5.45505 5.62685 5.79936 6.08923 6.50640 6.76770 6.92215 7.40253 8.90386 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030182 B = 0.008846 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.496177 B = 3164.537024 C = 3679.828958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C -0.130 4.130 4 C 0.077 3.923 5 N -0.672 5.672 6 C 0.215 3.785 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.003 3.997 10 N -0.932 5.932 11 Si 0.967 3.033 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.267 1.267 15 C -0.146 4.146 16 C 0.055 3.945 17 O -0.388 6.388 18 C 0.062 3.938 19 H 0.036 0.964 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.037 0.963 26 H 0.335 0.665 27 H 0.001 0.999 28 H -0.030 1.030 29 H 0.263 0.737 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 -0.671 -11.612 11.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C -0.169 4.169 4 C -0.015 4.015 5 N -0.303 5.303 6 C 0.088 3.912 7 C -0.572 4.572 8 H 0.079 0.921 9 C -0.195 4.195 10 N -0.572 5.572 11 Si 0.791 3.209 12 H -0.195 1.195 13 H -0.210 1.210 14 H -0.192 1.192 15 C -0.184 4.184 16 C -0.022 4.022 17 O -0.306 6.306 18 C -0.015 4.015 19 H 0.055 0.945 20 H 0.086 0.914 21 H 0.083 0.917 22 H 0.099 0.901 23 H 0.061 0.939 24 H 0.094 0.906 25 H 0.056 0.944 26 H 0.154 0.846 27 H 0.019 0.981 28 H -0.012 1.012 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.469 -0.201 -11.649 11.661 hybrid contribution -0.678 -0.456 1.465 1.678 sum -1.148 -0.656 -10.184 10.269 Atomic orbital electron populations 1.21698 0.94849 1.02129 1.01507 1.21557 0.96989 0.96048 1.01704 1.22124 0.95688 0.97887 1.01246 1.22376 0.92907 0.93819 0.92390 1.60775 1.62093 1.05868 1.01572 1.19131 0.91829 0.94692 0.85583 1.21550 1.24864 1.19124 0.91663 0.92084 1.25870 0.95757 0.96467 1.01409 1.70081 1.34897 1.32929 1.19344 0.85479 0.78819 0.78985 0.77571 1.19501 1.20960 1.19231 1.22988 1.00351 0.95912 0.99180 1.23418 0.96793 0.94691 0.87289 1.89034 1.83342 1.24458 1.33768 1.23478 1.00801 0.87776 0.89431 0.94472 0.91398 0.91663 0.90135 0.93871 0.90558 0.94375 0.84631 0.98071 1.01229 0.92805 0.91196 0.91699 0.87279 0.91832 0.91450 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.91 71.99 0.71 -3.10 16 2 C -0.13 -3.75 5.17 30.60 0.16 -3.59 16 3 C -0.13 -4.30 3.47 30.59 0.11 -4.19 16 4 C 0.08 2.65 0.64 4.54 0.00 2.66 16 5 N -0.67 -27.88 5.79 -469.14 -2.72 -30.60 16 6 C 0.22 11.19 4.39 85.56 0.38 11.57 16 7 C -0.53 -30.15 9.36 25.60 0.24 -29.91 16 8 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 9 C 0.00 0.18 5.46 84.65 0.46 0.64 16 10 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 11 Si 0.97 44.30 29.54 68.60 2.03 46.32 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 15 C -0.15 -4.98 5.82 31.61 0.18 -4.80 16 16 C 0.05 1.52 7.63 72.49 0.55 2.08 16 17 O -0.39 -11.62 11.65 -148.98 -1.74 -13.35 16 18 C 0.06 1.81 6.72 72.49 0.49 2.29 16 19 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 20 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.08 2.01 6.73 -2.39 -0.02 1.99 16 23 H 0.04 1.53 6.08 -2.39 -0.01 1.52 16 24 H 0.08 2.24 8.13 -2.39 -0.02 2.22 16 25 H 0.04 1.49 7.03 -2.39 -0.02 1.47 16 26 H 0.34 13.21 7.22 -89.69 -0.65 12.56 16 27 H 0.00 0.07 6.54 -2.39 -0.02 0.05 16 28 H -0.03 -1.67 6.22 -2.39 -0.01 -1.69 16 29 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.07 2.30 7.73 -2.39 -0.02 2.29 16 31 H 0.06 2.57 6.84 -2.39 -0.02 2.55 16 32 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 35 H 0.11 2.64 6.48 -2.39 -0.02 2.63 16 Total: -1.00 -62.37 274.07 1.56 -60.81 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.42 Total: 18.93 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 3.28 Total: -26.34 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -2.43 Total: -86.37 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -1.74 Total: -13.35 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -62.37 1.56 -60.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378840831.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.832 kcal (2) G-P(sol) polarization free energy of solvation -62.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds