Wall clock time and date at job start Sun Mar 29 2020 22:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47480 * 2 1 4 4 C 1.53001 * 109.47480 * 180.02562 * 3 2 1 5 5 N 1.46907 * 110.55976 * 57.32210 * 4 3 2 6 6 C 1.46894 * 111.00053 * 58.48374 * 5 4 3 7 7 C 1.50705 * 109.47125 * 174.66009 * 6 5 4 8 8 H 1.08004 * 119.99854 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00199 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99890 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 119.99769 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46691 * 90.00386 * 11 9 7 13 13 H 1.48493 * 109.46760 * 210.00486 * 11 9 7 14 14 H 1.48502 * 109.47259 * 330.00283 * 11 9 7 15 15 C 1.54503 * 110.51366 * 179.97438 * 4 3 2 16 16 C 1.54478 * 104.06229 * 118.64656 * 15 4 3 17 17 O 1.44429 * 104.80511 * 336.02308 * 16 15 4 18 18 C 1.44426 * 105.27251 * 40.50741 * 17 16 15 19 19 H 1.09003 * 109.47146 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46607 * 299.99614 * 1 2 3 21 21 H 1.08996 * 109.47086 * 59.99912 * 1 2 3 22 22 H 1.09002 * 109.46938 * 239.99681 * 2 1 3 23 23 H 1.09009 * 109.47188 * 120.00372 * 2 1 3 24 24 H 1.09002 * 109.47295 * 59.99900 * 3 2 1 25 25 H 1.09002 * 109.46861 * 300.00517 * 3 2 1 26 26 H 1.00904 * 110.99644 * 182.43592 * 5 4 3 27 27 H 1.08999 * 109.47428 * 294.65907 * 6 5 4 28 28 H 1.09003 * 109.47504 * 54.66115 * 6 5 4 29 29 H 0.96999 * 119.99774 * 179.97438 * 10 9 7 30 30 H 1.08998 * 110.51151 * 0.02562 * 15 4 3 31 31 H 1.09003 * 110.63259 * 237.34814 * 15 4 3 32 32 H 1.09004 * 110.37646 * 217.19313 * 16 15 4 33 33 H 1.09002 * 110.37510 * 94.85578 * 16 15 4 34 34 H 1.09002 * 110.36990 * 78.31863 * 18 17 16 35 35 H 1.09001 * 110.37181 * 200.65684 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0855 0.6999 -1.1588 6 6 3.5986 1.2821 -2.4165 7 6 4.2493 0.5796 -3.5802 8 1 4.9544 -0.2191 -3.4032 9 6 3.9454 0.9573 -4.8710 10 7 4.5129 0.3440 -5.8865 11 14 2.7264 2.3394 -5.1772 12 1 3.4505 3.6346 -5.2331 13 1 2.0280 2.1066 -6.4668 14 1 1.7318 2.3754 -4.0750 15 6 4.1115 2.8895 -0.0013 16 6 4.9164 2.9896 1.3134 17 8 4.3480 1.9770 2.1722 18 6 4.1119 0.8394 1.3143 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6768 1.9563 0.8900 25 1 1.6767 1.9562 -0.8900 26 1 5.0937 0.6619 -1.1443 27 1 2.5171 1.1616 -2.4780 28 1 3.8483 2.3427 -2.4466 29 1 4.2987 0.6095 -6.7945 30 1 3.2892 3.6049 -0.0007 31 1 4.7612 3.0561 -0.8605 32 1 4.7944 3.9770 1.7588 33 1 5.9708 2.7831 1.1295 34 1 5.0428 0.3031 1.1305 35 1 3.3718 0.1750 1.7604 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378840832.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:22 Heat of formation + Delta-G solvation = -77.802991 kcal Electronic energy + Delta-G solvation = -15092.118102 eV Core-core repulsion = 12702.712724 eV Total energy + Delta-G solvation = -2389.405379 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.02927 -37.35591 -35.22938 -34.15069 -31.78066 -30.37844 -28.24295 -26.98491 -24.12496 -23.30110 -22.05795 -20.25863 -19.07004 -17.31979 -17.26063 -16.62291 -16.12749 -15.89782 -15.36383 -14.85758 -14.66921 -14.15817 -14.00907 -13.70756 -13.57790 -13.04391 -12.93614 -12.74466 -12.51098 -12.16192 -12.06042 -11.83218 -11.66081 -11.44038 -11.29914 -11.22779 -10.82767 -10.68722 -9.13644 -8.31216 -6.34603 1.31648 1.34227 1.44866 2.31861 2.99111 3.04054 3.34733 3.75703 3.82286 3.93655 4.16973 4.21207 4.32692 4.40979 4.56686 4.72054 4.75350 4.82341 4.86203 4.90578 4.93659 4.97629 5.00085 5.11769 5.22891 5.29554 5.47699 5.53837 5.63450 5.71504 6.01413 6.53312 6.65753 6.77611 7.30182 8.85495 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028132 B = 0.009951 C = 0.008604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.066517 B = 2813.176286 C = 3253.562335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.095 4.095 4 C 0.079 3.921 5 N -0.665 5.665 6 C 0.181 3.819 7 C -0.526 4.526 8 H 0.038 0.962 9 C 0.010 3.990 10 N -0.947 5.947 11 Si 0.945 3.055 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.250 1.250 15 C -0.189 4.189 16 C 0.050 3.950 17 O -0.388 6.388 18 C 0.060 3.940 19 H 0.059 0.941 20 H 0.065 0.935 21 H 0.042 0.958 22 H 0.050 0.950 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.335 0.665 27 H 0.027 0.973 28 H -0.014 1.014 29 H 0.267 0.733 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 5.333 14.375 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.133 4.133 4 C -0.013 4.013 5 N -0.296 5.296 6 C 0.053 3.947 7 C -0.564 4.564 8 H 0.056 0.944 9 C -0.187 4.187 10 N -0.587 5.587 11 Si 0.768 3.232 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.174 1.174 15 C -0.228 4.228 16 C -0.027 4.027 17 O -0.307 6.307 18 C -0.017 4.017 19 H 0.078 0.922 20 H 0.084 0.916 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.153 0.847 27 H 0.045 0.955 28 H 0.004 0.996 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.423 4.853 14.450 16.179 hybrid contribution 0.455 1.108 -1.223 1.711 sum -4.968 5.961 13.228 15.336 Atomic orbital electron populations 1.21761 0.95318 1.01904 1.01557 1.21429 0.95817 0.96093 1.02137 1.21569 0.92287 0.98032 1.01392 1.22445 0.96405 0.90712 0.91757 1.60478 1.14221 1.53712 1.01182 1.19702 0.95787 0.92090 0.87140 1.21376 1.25468 1.18669 0.90909 0.94365 1.25816 0.97969 0.99209 0.95755 1.70048 1.45490 1.43840 0.99363 0.85750 0.79810 0.79380 0.78236 1.19202 1.20791 1.17375 1.23726 1.01141 0.98972 0.98982 1.23442 0.96699 0.93315 0.89249 1.89077 1.83349 1.25215 1.33026 1.23483 1.00686 0.88882 0.88638 0.92193 0.91637 0.93919 0.93104 0.91231 0.90332 0.93496 0.84670 0.95537 0.99611 0.92438 0.90180 0.91448 0.87323 0.91857 0.91918 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.12 -3.40 5.58 30.59 0.17 -3.23 16 3 C -0.10 -2.82 3.60 30.59 0.11 -2.71 16 4 C 0.08 2.45 0.59 4.54 0.00 2.45 16 5 N -0.67 -25.85 5.32 -469.13 -2.50 -28.35 16 6 C 0.18 8.38 3.74 85.56 0.32 8.70 16 7 C -0.53 -30.00 9.81 25.60 0.25 -29.75 16 8 H 0.04 2.42 8.06 -2.91 -0.02 2.39 16 9 C 0.01 0.59 5.47 84.66 0.46 1.05 16 10 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 11 Si 0.94 43.87 27.47 68.60 1.88 45.76 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 14 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 15 C -0.19 -5.39 5.79 31.61 0.18 -5.21 16 16 C 0.05 1.20 7.63 72.48 0.55 1.76 16 17 O -0.39 -10.74 11.65 -148.98 -1.74 -12.47 16 18 C 0.06 1.65 6.73 72.48 0.49 2.14 16 19 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 20 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.05 1.82 7.56 -2.39 -0.02 1.80 16 23 H 0.07 1.80 6.42 -2.38 -0.02 1.78 16 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.05 1.55 6.76 -2.39 -0.02 1.54 16 26 H 0.34 13.06 8.51 -89.69 -0.76 12.30 16 27 H 0.03 1.26 5.76 -2.39 -0.01 1.25 16 28 H -0.01 -0.62 5.93 -2.39 -0.01 -0.64 16 29 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.08 2.15 7.73 -2.39 -0.02 2.13 16 31 H 0.07 2.14 6.82 -2.39 -0.02 2.12 16 32 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.72 7.93 -2.39 -0.02 1.70 16 35 H 0.11 2.69 6.14 -2.39 -0.01 2.68 16 Total: -1.00 -63.39 272.79 1.45 -61.94 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.24 Total: 19.55 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 3.26 Total: -27.73 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -2.20 Total: -87.04 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.74 Total: -12.47 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.76 kcal Total: -63.39 1.45 -61.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378840832.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.867 kcal (2) G-P(sol) polarization free energy of solvation -63.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds