Wall clock time and date at job start Sun Mar 29 2020 22:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 C 1.53003 * 109.46593 * 179.97438 * 14 10 9 16 16 C 1.53003 * 109.46593 * 179.97438 * 15 14 10 17 17 C 1.53005 * 109.47363 * 60.00223 * 16 15 14 18 18 C 1.52998 * 109.46681 * 299.99779 * 17 16 15 19 19 C 1.52994 * 109.47372 * 60.00243 * 18 17 16 20 20 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 22 22 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 23 23 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 24 24 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 25 25 H 1.08994 * 109.47273 * 299.99863 * 14 10 9 26 26 H 1.09000 * 109.47125 * 299.99472 * 15 14 10 27 27 H 1.08994 * 109.47353 * 60.00305 * 15 14 10 28 28 H 1.08994 * 109.47273 * 299.99898 * 16 15 14 29 29 H 1.09003 * 109.46808 * 179.97438 * 16 15 14 30 30 H 1.08998 * 109.47131 * 179.97438 * 17 16 15 31 31 H 1.09002 * 109.46899 * 59.99606 * 17 16 15 32 32 H 1.08994 * 109.47182 * 299.99851 * 18 17 16 33 33 H 1.09004 * 109.46776 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47549 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47448 * 59.99414 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 8 1.2276 -4.2999 2.1631 14 6 1.1806 -4.7488 -0.6288 15 6 1.9459 -6.0737 -0.6364 16 6 1.0683 -7.1659 -1.2512 17 6 0.7034 -6.7796 -2.6859 18 6 -0.0618 -5.4547 -2.6783 19 6 0.8157 -4.3625 -2.0636 20 1 -0.4850 0.8401 0.0004 21 1 0.3555 -2.3880 -0.0068 22 1 3.0424 -4.9392 1.4103 23 1 2.9715 -3.2265 1.8893 24 1 1.3828 -4.5515 3.0838 25 1 0.2700 -4.8582 -0.0400 26 1 2.8563 -5.9641 -1.2256 27 1 2.2055 -6.3492 0.3857 28 1 0.1581 -7.2754 -0.6617 29 1 1.6137 -8.1097 -1.2570 30 1 0.0786 -7.5579 -3.1240 31 1 1.6137 -6.6701 -3.2755 32 1 -0.9720 -5.5642 -2.0888 33 1 -0.3214 -5.1793 -3.7005 34 1 0.2707 -3.4185 -2.0586 35 1 1.7260 -4.2530 -2.6531 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379354953.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:29 Heat of formation + Delta-G solvation = -67.831173 kcal Electronic energy + Delta-G solvation = -15054.158510 eV Core-core repulsion = 12665.185542 eV Total energy + Delta-G solvation = -2388.972968 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.66766 -36.16154 -34.16876 -31.90189 -30.39726 -29.41374 -26.82512 -23.94047 -22.25032 -21.90659 -19.63915 -19.28042 -17.14826 -16.46142 -15.30168 -14.63922 -13.99676 -13.90514 -13.75929 -13.49178 -13.13393 -12.98620 -11.98279 -11.89367 -11.69322 -11.45710 -11.00648 -10.80490 -10.76834 -10.67582 -10.50161 -10.11883 -9.86868 -9.77321 -9.52206 -9.43210 -9.11282 -8.78981 -6.84506 -5.68404 -2.95667 3.46967 3.51274 3.52482 4.63799 5.03340 5.05429 5.14153 5.17195 5.56063 5.58436 5.64928 5.74790 5.84369 5.93542 5.93901 5.96018 6.00022 6.17995 6.30529 6.32508 6.42103 6.47433 6.50250 6.59677 6.67804 6.74339 6.89197 7.10215 7.19269 7.73658 8.32309 8.50208 9.61380 10.22302 10.58129 11.54103 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.008644 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.436017 B = 3238.633339 C = 3653.951194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.238 4.238 8 H 0.067 0.933 9 N -0.713 5.713 10 C 0.182 3.818 11 H 0.055 0.945 12 C 0.056 3.944 13 O -0.558 6.558 14 C -0.083 4.083 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.109 4.109 20 H 0.254 0.746 21 H 0.386 0.614 22 H 0.024 0.976 23 H 0.039 0.961 24 H 0.358 0.642 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -13.031 -1.555 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.370 4.370 8 H 0.085 0.915 9 N -0.353 5.353 10 C 0.072 3.928 11 H 0.073 0.927 12 C -0.025 4.025 13 O -0.361 6.361 14 C -0.103 4.103 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.146 4.146 20 H 0.064 0.936 21 H 0.221 0.779 22 H 0.042 0.958 23 H 0.057 0.943 24 H 0.202 0.798 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.890 -12.707 -2.164 13.210 hybrid contribution 0.563 0.865 0.664 1.227 sum 3.453 -11.842 -1.500 12.427 Atomic orbital electron populations 1.69664 1.05027 1.25529 1.57653 1.24709 0.95458 0.97485 1.03277 0.86317 0.78522 0.83915 0.77713 1.21391 1.21749 1.21465 1.19194 0.90802 0.84361 1.42602 0.91524 1.42309 1.05907 0.99185 1.87885 1.20338 0.94849 0.86923 0.90724 0.92690 1.23176 0.86301 0.96603 0.96377 1.86585 1.32386 1.91649 1.25458 1.21238 0.99458 0.93526 0.96041 1.21583 0.98144 0.95034 1.00118 1.21508 0.99843 0.97783 0.96244 1.21531 0.99919 0.97265 0.96769 1.21554 0.98781 0.95084 1.00258 1.21506 0.99356 0.98441 0.95337 0.93587 0.77935 0.95804 0.94263 0.79765 0.90757 0.92648 0.92244 0.92234 0.92894 0.92925 0.92418 0.92339 0.92715 0.90595 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.90 22.73 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.71 9.93 -15.06 -0.15 -6.86 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.71 -18.30 4.38 -53.42 -0.23 -18.53 16 10 C 0.18 3.75 2.27 -67.93 -0.15 3.60 16 11 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 12 C 0.06 1.05 6.35 37.16 0.24 1.28 16 13 O -0.56 -10.46 12.73 -35.23 -0.45 -10.91 16 14 C -0.08 -1.48 1.63 -90.61 -0.15 -1.62 16 15 C -0.11 -1.61 4.85 -26.73 -0.13 -1.73 16 16 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 17 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 18 C -0.12 -1.74 5.92 -26.74 -0.16 -1.90 16 19 C -0.11 -1.91 5.05 -26.73 -0.13 -2.05 16 20 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 21 H 0.39 10.81 7.58 -40.82 -0.31 10.50 16 22 H 0.02 0.38 6.71 -51.93 -0.35 0.03 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.36 4.93 9.12 45.56 0.42 5.35 16 25 H 0.07 1.46 7.56 -51.93 -0.39 1.07 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.84 6.54 -51.93 -0.34 0.50 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.57 7.45 -51.93 -0.39 1.19 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 276.83 15.07 4.17 4.17 Total: -1.00 -30.98 276.83 -6.99 -37.97 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.13 Total: 10.57 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -1.05 Total: -13.03 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.49 Total: -46.48 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.45 Total: -10.91 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.98 -6.99 -37.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379354953.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.864 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds