Wall clock time and date at job start Sun Mar 29 2020 22:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 C 1.53003 * 109.46593 * 179.97438 * 14 10 9 16 16 C 1.53003 * 109.46593 * 179.97438 * 15 14 10 17 17 C 1.53005 * 109.47363 * 60.00223 * 16 15 14 18 18 C 1.52998 * 109.46681 * 299.99779 * 17 16 15 19 19 C 1.52994 * 109.47372 * 60.00243 * 18 17 16 20 20 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 22 22 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 23 23 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 24 24 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 25 25 H 1.08994 * 109.47273 * 299.99863 * 14 10 9 26 26 H 1.09000 * 109.47125 * 299.99472 * 15 14 10 27 27 H 1.08994 * 109.47353 * 60.00305 * 15 14 10 28 28 H 1.08994 * 109.47273 * 299.99898 * 16 15 14 29 29 H 1.09003 * 109.46808 * 179.97438 * 16 15 14 30 30 H 1.08998 * 109.47131 * 179.97438 * 17 16 15 31 31 H 1.09002 * 109.46899 * 59.99606 * 17 16 15 32 32 H 1.08994 * 109.47182 * 299.99851 * 18 17 16 33 33 H 1.09004 * 109.46776 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47549 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47448 * 59.99414 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 8 1.2276 -4.2999 2.1631 14 6 1.1806 -4.7488 -0.6288 15 6 1.9459 -6.0737 -0.6364 16 6 1.0683 -7.1659 -1.2512 17 6 0.7034 -6.7796 -2.6859 18 6 -0.0618 -5.4547 -2.6783 19 6 0.8157 -4.3625 -2.0636 20 1 -0.4850 0.8401 0.0004 21 1 0.3555 -2.3880 -0.0068 22 1 3.0424 -4.9392 1.4103 23 1 2.9715 -3.2265 1.8893 24 1 1.3828 -4.5515 3.0838 25 1 0.2700 -4.8582 -0.0400 26 1 2.8563 -5.9641 -1.2256 27 1 2.2055 -6.3492 0.3857 28 1 0.1581 -7.2754 -0.6617 29 1 1.6137 -8.1097 -1.2570 30 1 0.0786 -7.5579 -3.1240 31 1 1.6137 -6.6701 -3.2755 32 1 -0.9720 -5.5642 -2.0888 33 1 -0.3214 -5.1793 -3.7005 34 1 0.2707 -3.4185 -2.0586 35 1 1.7260 -4.2530 -2.6531 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379354953.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:29 Heat of formation + Delta-G solvation = -89.638145 kcal Electronic energy + Delta-G solvation = -15055.104132 eV Core-core repulsion = 12665.185542 eV Total energy + Delta-G solvation = -2389.918589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.04672 -37.58456 -35.98562 -33.71401 -31.66516 -31.08928 -28.41260 -25.87892 -23.72307 -23.14689 -21.07584 -20.66984 -19.11603 -18.03597 -16.87276 -16.36687 -15.58734 -15.30214 -15.13377 -14.81120 -14.73636 -14.67630 -13.48659 -13.30090 -13.12703 -12.88127 -12.79138 -12.58279 -12.36353 -12.10720 -11.91667 -11.78077 -11.65402 -11.23091 -11.06368 -10.85182 -10.63300 -10.57476 -8.93640 -7.89915 -5.16903 1.45562 1.48909 1.54927 2.57453 3.41533 3.64741 3.84016 3.90096 3.99067 4.13625 4.35613 4.46424 4.51992 4.58950 4.68288 4.72677 4.76737 4.86660 4.93950 5.00459 5.05754 5.21580 5.27178 5.33594 5.41500 5.44828 5.49927 5.52721 5.68951 5.75570 6.30891 7.08836 7.36936 8.16375 8.40189 9.33725 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.008644 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.436017 B = 3238.633339 C = 3653.951194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.237 4.237 8 H 0.074 0.926 9 N -0.725 5.725 10 C 0.171 3.829 11 H 0.054 0.946 12 C 0.065 3.935 13 O -0.578 6.578 14 C -0.073 4.073 15 C -0.105 4.105 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.106 4.106 20 H 0.248 0.752 21 H 0.370 0.630 22 H 0.064 0.936 23 H 0.020 0.980 24 H 0.381 0.619 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.515 -14.841 -1.729 15.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.092 0.908 9 N -0.363 5.363 10 C 0.062 3.938 11 H 0.072 0.928 12 C -0.016 4.016 13 O -0.384 6.384 14 C -0.092 4.092 15 C -0.143 4.143 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.144 4.144 20 H 0.057 0.943 21 H 0.202 0.798 22 H 0.082 0.918 23 H 0.038 0.962 24 H 0.228 0.772 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.395 -14.567 -2.320 15.392 hybrid contribution 0.124 1.355 0.733 1.545 sum 4.518 -13.213 -1.586 14.054 Atomic orbital electron populations 1.69843 1.06653 1.25784 1.59859 1.25535 0.96312 1.00977 1.04290 0.85245 0.77161 0.79466 0.78103 1.20398 1.22363 1.20554 1.19611 0.91295 0.85447 1.40529 0.90769 1.42476 1.05258 1.00527 1.88080 1.20664 0.94825 0.85831 0.92497 0.92766 1.22937 0.86426 0.97679 0.94515 1.86534 1.32751 1.91781 1.27371 1.21106 0.98382 0.94549 0.95148 1.21547 0.98299 0.93343 1.01104 1.21507 0.99605 0.98117 0.95889 1.21517 1.00247 0.96177 0.97099 1.21524 0.98221 0.95438 1.00187 1.21428 0.99357 0.97687 0.95884 0.94283 0.79835 0.91766 0.96208 0.77152 0.93035 0.91690 0.91475 0.92681 0.90235 0.90771 0.91692 0.92952 0.91981 0.94939 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.67 13.06 21.65 0.28 -61.39 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 3 Si 0.97 47.37 29.55 68.60 2.03 49.39 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.24 -13.51 9.93 84.04 0.83 -12.67 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.72 -38.13 4.38 -322.93 -1.41 -39.54 16 10 C 0.17 6.97 2.27 44.99 0.10 7.07 16 11 H 0.05 2.21 8.08 -2.39 -0.02 2.19 16 12 C 0.06 2.32 6.35 71.98 0.46 2.78 16 13 O -0.58 -21.08 12.73 -148.98 -1.90 -22.97 16 14 C -0.07 -2.54 1.63 -10.79 -0.02 -2.55 16 15 C -0.11 -2.75 4.85 30.60 0.15 -2.60 16 16 C -0.11 -2.51 5.92 30.60 0.18 -2.33 16 17 C -0.11 -2.50 5.92 30.60 0.18 -2.32 16 18 C -0.12 -3.27 5.92 30.59 0.18 -3.08 16 19 C -0.11 -3.75 5.05 30.59 0.15 -3.59 16 20 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 21 H 0.37 21.62 7.58 -92.71 -0.70 20.92 16 22 H 0.06 1.81 6.71 -2.39 -0.02 1.79 16 23 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.38 9.84 9.12 -74.06 -0.68 9.16 16 25 H 0.05 2.04 7.56 -2.39 -0.02 2.02 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.07 1.66 6.54 -2.39 -0.02 1.65 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.03 1.41 7.45 -2.39 -0.02 1.39 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -67.70 276.83 1.38 -66.32 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -0.31 Total: 31.71 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 2.69 Total: -23.52 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -1.13 Total: -100.93 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -1.90 Total: -22.97 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -67.70 1.38 -66.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379354953.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.315 kcal (2) G-P(sol) polarization free energy of solvation -67.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds