Wall clock time and date at job start Sun Mar 29 2020 22:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99784 * 2 1 4 4 H 1.48497 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47081 * 299.99887 * 3 2 1 6 6 H 1.48499 * 109.47322 * 59.99612 * 3 2 1 7 7 C 1.38807 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00349 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99894 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47151 * 34.99834 * 10 9 7 12 12 C 1.53000 * 109.46958 * 274.99579 * 10 9 7 13 13 O 1.42900 * 109.47085 * 295.46700 * 12 10 9 14 14 C 1.53001 * 109.47155 * 154.99729 * 10 9 7 15 15 C 1.52993 * 109.47222 * 303.85491 * 14 10 9 16 16 C 1.53000 * 109.47316 * 179.97438 * 15 14 10 17 17 C 1.53005 * 109.46395 * 60.00305 * 16 15 14 18 18 C 1.52993 * 109.47139 * 299.99803 * 17 16 15 19 19 C 1.52994 * 109.47337 * 60.00452 * 18 17 16 20 20 H 0.97002 * 120.00270 * 0.02562 * 1 2 3 21 21 H 0.96997 * 119.99891 * 359.97438 * 9 7 2 22 22 H 1.08998 * 109.47125 * 175.46460 * 12 10 9 23 23 H 1.09004 * 109.47152 * 55.46491 * 12 10 9 24 24 H 0.96709 * 114.00010 * 180.02562 * 13 12 10 25 25 H 1.09002 * 109.46782 * 63.85434 * 14 10 9 26 26 H 1.08992 * 109.47490 * 300.00163 * 15 14 10 27 27 H 1.09008 * 109.46897 * 60.00080 * 15 14 10 28 28 H 1.09001 * 109.47613 * 300.00566 * 16 15 14 29 29 H 1.08997 * 109.47459 * 179.97438 * 16 15 14 30 30 H 1.09003 * 109.46654 * 179.97438 * 17 16 15 31 31 H 1.08993 * 109.47440 * 60.00403 * 17 16 15 32 32 H 1.09001 * 109.47242 * 299.99968 * 18 17 16 33 33 H 1.09004 * 109.46884 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.47481 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.47350 * 59.99582 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 2.9684 -3.5501 0.5917 12 6 2.4231 -4.0362 -1.4349 13 8 1.2290 -4.2789 -2.1814 14 6 1.1806 -4.7518 0.6112 15 6 0.7365 -4.3285 2.0127 16 6 -0.1416 -5.4233 2.6220 17 6 0.6562 -6.7258 2.7114 18 6 1.1003 -7.1492 1.3099 19 6 1.9783 -6.0544 0.7006 20 1 -0.4851 0.8400 -0.0004 21 1 0.3557 -2.3881 0.0005 22 1 3.0368 -4.9369 -1.4281 23 1 2.9802 -3.2204 -1.8958 24 1 1.3848 -4.5255 -3.1034 25 1 0.3032 -4.9058 -0.0170 26 1 1.6139 -4.1744 2.6408 27 1 0.1679 -3.4007 1.9489 28 1 -1.0190 -5.5771 1.9937 29 1 -0.4576 -5.1219 3.6206 30 1 0.0308 -7.5057 3.1459 31 1 1.5335 -6.5722 3.3397 32 1 0.2229 -7.3030 0.6817 33 1 1.6683 -8.0774 1.3737 34 1 2.2943 -6.3558 -0.2980 35 1 2.8557 -5.9006 1.3289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379354954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:32 Heat of formation + Delta-G solvation = -67.892772 kcal Electronic energy + Delta-G solvation = -15057.121909 eV Core-core repulsion = 12668.146270 eV Total energy + Delta-G solvation = -2388.975639 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.66272 -36.16687 -34.17200 -31.90207 -30.39718 -29.39969 -26.84732 -23.93220 -22.25541 -21.89945 -19.63871 -19.27678 -17.15990 -16.46714 -15.29713 -14.62719 -14.00105 -13.89758 -13.76672 -13.49760 -13.12025 -13.00092 -11.95456 -11.89956 -11.70620 -11.48032 -11.00499 -10.81229 -10.78086 -10.67849 -10.49815 -10.05836 -9.85856 -9.79061 -9.52495 -9.42149 -9.11050 -8.80063 -6.84422 -5.68913 -2.96090 3.46163 3.51351 3.53819 4.63487 5.03422 5.05330 5.14313 5.17099 5.55866 5.58679 5.64762 5.74912 5.84302 5.94000 5.94190 5.96128 6.00459 6.17793 6.30237 6.32559 6.41467 6.47894 6.50530 6.59408 6.68447 6.74420 6.89515 7.11721 7.19675 7.74440 8.32103 8.49714 9.61077 10.21961 10.57712 11.53717 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036579 B = 0.008684 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.289184 B = 3223.484307 C = 3637.847108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.014 4.014 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.068 0.932 9 N -0.713 5.713 10 C 0.182 3.818 11 H 0.055 0.945 12 C 0.056 3.944 13 O -0.558 6.558 14 C -0.085 4.085 15 C -0.108 4.108 16 C -0.119 4.119 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.111 4.111 20 H 0.253 0.747 21 H 0.387 0.613 22 H 0.024 0.976 23 H 0.039 0.961 24 H 0.359 0.641 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 -13.030 1.547 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.210 4.210 3 Si 0.735 3.265 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.368 4.368 8 H 0.086 0.914 9 N -0.353 5.353 10 C 0.072 3.928 11 H 0.073 0.927 12 C -0.024 4.024 13 O -0.361 6.361 14 C -0.104 4.104 15 C -0.146 4.146 16 C -0.157 4.157 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.149 4.149 20 H 0.063 0.937 21 H 0.221 0.779 22 H 0.042 0.958 23 H 0.057 0.943 24 H 0.203 0.797 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.914 -12.718 2.155 13.225 hybrid contribution 0.541 0.872 -0.668 1.224 sum 3.455 -11.847 1.487 12.430 Atomic orbital electron populations 1.69683 1.05021 1.25290 1.57841 1.24709 0.95462 0.97495 1.03330 0.86173 0.78725 0.84508 0.77128 1.20701 1.22008 1.21968 1.19285 0.90866 0.84335 1.42301 0.91414 1.42327 1.05928 0.99201 1.87849 1.20338 0.94845 0.86939 0.90724 0.92689 1.23166 0.86307 0.96643 0.96314 1.86583 1.32351 1.91995 1.25151 1.21251 0.99117 0.93644 0.96362 1.21496 0.99308 0.98268 0.95501 1.21562 0.98590 0.95232 1.00314 1.21529 0.99700 0.97337 0.96920 1.21501 0.99643 0.97715 0.96503 1.21579 0.98092 0.95152 1.00069 0.93694 0.77917 0.95838 0.94259 0.79748 0.90727 0.92813 0.90534 0.92366 0.92705 0.92932 0.92407 0.92255 0.92887 0.92347 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.90 22.72 29.55 -169.99 -5.02 17.70 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -18.27 4.32 -53.43 -0.23 -18.50 16 10 C 0.18 3.74 2.27 -67.93 -0.15 3.59 16 11 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 12 C 0.06 1.05 6.47 37.16 0.24 1.29 16 13 O -0.56 -10.47 12.67 -35.23 -0.45 -10.92 16 14 C -0.08 -1.50 1.68 -90.62 -0.15 -1.65 16 15 C -0.11 -1.91 5.00 -26.73 -0.13 -2.05 16 16 C -0.12 -1.75 5.92 -26.73 -0.16 -1.91 16 17 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 18 C -0.12 -1.48 5.92 -26.74 -0.16 -1.64 16 19 C -0.11 -1.60 4.94 -26.73 -0.13 -1.74 16 20 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 21 H 0.39 10.79 7.34 -40.82 -0.30 10.49 16 22 H 0.02 0.37 6.76 -51.93 -0.35 0.02 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.36 4.94 9.12 45.56 0.42 5.35 16 25 H 0.07 1.46 7.44 -51.93 -0.39 1.07 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.60 7.20 -51.92 -0.37 1.23 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.82 6.63 -51.93 -0.34 0.48 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 276.46 15.07 4.17 4.17 Total: -1.00 -31.01 276.46 -6.97 -37.98 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.11 Total: 10.52 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -1.05 Total: -13.03 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.49 Total: -46.41 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.45 Total: -10.92 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.01 -6.97 -37.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379354954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.913 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds