Wall clock time and date at job start Sun Mar 29 2020 22:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99784 * 2 1 4 4 H 1.48497 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47081 * 299.99887 * 3 2 1 6 6 H 1.48499 * 109.47322 * 59.99612 * 3 2 1 7 7 C 1.38807 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00349 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99894 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47151 * 34.99834 * 10 9 7 12 12 C 1.53000 * 109.46958 * 274.99579 * 10 9 7 13 13 O 1.42900 * 109.47085 * 295.46700 * 12 10 9 14 14 C 1.53001 * 109.47155 * 154.99729 * 10 9 7 15 15 C 1.52993 * 109.47222 * 303.85491 * 14 10 9 16 16 C 1.53000 * 109.47316 * 179.97438 * 15 14 10 17 17 C 1.53005 * 109.46395 * 60.00305 * 16 15 14 18 18 C 1.52993 * 109.47139 * 299.99803 * 17 16 15 19 19 C 1.52994 * 109.47337 * 60.00452 * 18 17 16 20 20 H 0.97002 * 120.00270 * 0.02562 * 1 2 3 21 21 H 0.96997 * 119.99891 * 359.97438 * 9 7 2 22 22 H 1.08998 * 109.47125 * 175.46460 * 12 10 9 23 23 H 1.09004 * 109.47152 * 55.46491 * 12 10 9 24 24 H 0.96709 * 114.00010 * 180.02562 * 13 12 10 25 25 H 1.09002 * 109.46782 * 63.85434 * 14 10 9 26 26 H 1.08992 * 109.47490 * 300.00163 * 15 14 10 27 27 H 1.09008 * 109.46897 * 60.00080 * 15 14 10 28 28 H 1.09001 * 109.47613 * 300.00566 * 16 15 14 29 29 H 1.08997 * 109.47459 * 179.97438 * 16 15 14 30 30 H 1.09003 * 109.46654 * 179.97438 * 17 16 15 31 31 H 1.08993 * 109.47440 * 60.00403 * 17 16 15 32 32 H 1.09001 * 109.47242 * 299.99968 * 18 17 16 33 33 H 1.09004 * 109.46884 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.47481 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.47350 * 59.99582 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 2.9684 -3.5501 0.5917 12 6 2.4231 -4.0362 -1.4349 13 8 1.2290 -4.2789 -2.1814 14 6 1.1806 -4.7518 0.6112 15 6 0.7365 -4.3285 2.0127 16 6 -0.1416 -5.4233 2.6220 17 6 0.6562 -6.7258 2.7114 18 6 1.1003 -7.1492 1.3099 19 6 1.9783 -6.0544 0.7006 20 1 -0.4851 0.8400 -0.0004 21 1 0.3557 -2.3881 0.0005 22 1 3.0368 -4.9369 -1.4281 23 1 2.9802 -3.2204 -1.8958 24 1 1.3848 -4.5255 -3.1034 25 1 0.3032 -4.9058 -0.0170 26 1 1.6139 -4.1744 2.6408 27 1 0.1679 -3.4007 1.9489 28 1 -1.0190 -5.5771 1.9937 29 1 -0.4576 -5.1219 3.6206 30 1 0.0308 -7.5057 3.1459 31 1 1.5335 -6.5722 3.3397 32 1 0.2229 -7.3030 0.6817 33 1 1.6683 -8.0774 1.3737 34 1 2.2943 -6.3558 -0.2980 35 1 2.8557 -5.9006 1.3289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379354954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:32 Heat of formation + Delta-G solvation = -89.687165 kcal Electronic energy + Delta-G solvation = -15058.066985 eV Core-core repulsion = 12668.146270 eV Total energy + Delta-G solvation = -2389.920715 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.04298 -37.59022 -35.98598 -33.71435 -31.67002 -31.07238 -28.43385 -25.87534 -23.71777 -23.14652 -21.07789 -20.66245 -19.12985 -18.03979 -16.86954 -16.36419 -15.56540 -15.32374 -15.13138 -14.81793 -14.74701 -14.66843 -13.47329 -13.28998 -13.15066 -12.89579 -12.85250 -12.56534 -12.36145 -12.03311 -11.91610 -11.77430 -11.65717 -11.23298 -11.08028 -10.84875 -10.63432 -10.57466 -8.93462 -7.90270 -5.17112 1.45741 1.46835 1.56482 2.57112 3.41611 3.64696 3.83877 3.90196 3.99088 4.13791 4.35287 4.46642 4.51899 4.59245 4.68701 4.72914 4.76695 4.86033 4.93835 5.00955 5.05394 5.21622 5.27312 5.33834 5.41615 5.45015 5.50490 5.52919 5.69195 5.75964 6.30881 7.08794 7.36929 8.16314 8.39964 9.33746 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036579 B = 0.008684 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.289184 B = 3223.484307 C = 3637.847108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.234 4.234 8 H 0.075 0.925 9 N -0.725 5.725 10 C 0.170 3.830 11 H 0.055 0.945 12 C 0.065 3.935 13 O -0.579 6.579 14 C -0.074 4.074 15 C -0.105 4.105 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.113 4.113 19 C -0.105 4.105 20 H 0.248 0.752 21 H 0.370 0.630 22 H 0.064 0.936 23 H 0.020 0.980 24 H 0.381 0.619 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 -14.872 1.720 15.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.224 1.224 6 H -0.222 1.222 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.363 5.363 10 C 0.062 3.938 11 H 0.072 0.928 12 C -0.016 4.016 13 O -0.385 6.385 14 C -0.093 4.093 15 C -0.143 4.143 16 C -0.154 4.154 17 C -0.151 4.151 18 C -0.151 4.151 19 C -0.143 4.143 20 H 0.057 0.943 21 H 0.202 0.798 22 H 0.082 0.918 23 H 0.039 0.961 24 H 0.229 0.771 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.424 -14.610 2.310 15.439 hybrid contribution 0.097 1.372 -0.737 1.561 sum 4.521 -13.238 1.573 14.077 Atomic orbital electron populations 1.69854 1.06646 1.25612 1.60044 1.25527 0.96315 1.00956 1.04385 0.85113 0.78277 0.80148 0.76494 1.18944 1.22355 1.22232 1.19682 0.91306 0.85414 1.40165 0.90730 1.42494 1.05292 1.00530 1.88020 1.20665 0.94825 0.85852 0.92497 0.92759 1.22931 0.86402 0.97761 0.94463 1.86532 1.32735 1.92132 1.27072 1.21121 0.98261 0.94552 0.95357 1.21413 0.99167 0.97618 0.96080 1.21530 0.98145 0.95521 1.00185 1.21516 0.99916 0.96316 0.97305 1.21500 0.99497 0.97988 0.96106 1.21544 0.98106 0.93564 1.01100 0.94312 0.79791 0.91807 0.96143 0.77133 0.92829 0.92999 0.94916 0.92877 0.92067 0.90761 0.91774 0.92595 0.90226 0.91437 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.64 13.06 21.65 0.28 -61.35 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 3 Si 0.97 47.39 29.55 68.60 2.03 49.42 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 7 C -0.23 -13.30 9.93 84.03 0.83 -12.46 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.72 -38.02 4.32 -322.95 -1.40 -39.42 16 10 C 0.17 6.95 2.27 44.99 0.10 7.05 16 11 H 0.05 2.21 8.08 -2.39 -0.02 2.19 16 12 C 0.06 2.32 6.47 71.98 0.47 2.78 16 13 O -0.58 -21.10 12.67 -148.98 -1.89 -22.98 16 14 C -0.07 -2.57 1.68 -10.80 -0.02 -2.58 16 15 C -0.10 -3.75 5.00 30.59 0.15 -3.60 16 16 C -0.12 -3.29 5.92 30.60 0.18 -3.11 16 17 C -0.11 -2.51 5.92 30.59 0.18 -2.33 16 18 C -0.11 -2.49 5.92 30.59 0.18 -2.31 16 19 C -0.11 -2.75 4.94 30.59 0.15 -2.60 16 20 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 21 H 0.37 21.58 7.34 -92.71 -0.68 20.90 16 22 H 0.06 1.79 6.76 -2.39 -0.02 1.78 16 23 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.38 9.84 9.12 -74.05 -0.68 9.16 16 25 H 0.05 2.10 7.44 -2.39 -0.02 2.08 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.03 1.43 7.20 -2.38 -0.02 1.41 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.07 1.65 6.63 -2.39 -0.02 1.63 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -67.74 276.46 1.44 -66.31 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -0.29 Total: 31.46 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 2.70 Total: -23.43 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -1.11 Total: -100.77 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -1.89 Total: -22.98 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -67.74 1.44 -66.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379354954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.378 kcal (2) G-P(sol) polarization free energy of solvation -67.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds