Wall clock time and date at job start Sun Mar 29 2020 21:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46993 * 2 1 4 4 O 1.42899 * 109.47047 * 119.99601 * 2 1 3 5 5 C 1.50693 * 109.47308 * 239.99672 * 2 1 3 6 6 O 1.21284 * 120.00300 * 245.00067 * 5 2 1 7 7 N 1.34782 * 120.00051 * 64.99557 * 5 2 1 8 8 C 1.46504 * 119.99909 * 179.97438 * 7 5 2 9 9 C 1.52999 * 109.46783 * 178.27907 * 8 7 5 10 10 C 1.50700 * 115.54496 * 65.14854 * 9 8 7 11 11 H 1.08004 * 120.00145 * 265.39553 * 10 9 8 12 12 C 1.37875 * 120.00322 * 85.40745 * 10 9 8 13 13 N 1.31517 * 119.99889 * 353.54579 * 12 10 9 14 14 Si 1.86798 * 120.00351 * 173.55590 * 12 10 9 15 15 H 1.48505 * 109.47377 * 59.99112 * 14 12 10 16 16 H 1.48498 * 109.47366 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47003 * 299.99401 * 14 12 10 18 18 C 1.52997 * 117.50496 * 279.47394 * 9 8 7 19 19 C 1.53000 * 117.49680 * 210.81038 * 9 8 7 20 20 H 1.09000 * 109.46994 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47147 * 300.00231 * 1 2 3 22 22 H 1.08996 * 109.47226 * 60.00449 * 1 2 3 23 23 H 0.96697 * 113.99966 * 59.99929 * 4 2 1 24 24 H 0.96998 * 119.99899 * 0.02562 * 7 5 2 25 25 H 1.08998 * 109.47202 * 298.28780 * 8 7 5 26 26 H 1.08999 * 109.46637 * 58.28628 * 8 7 5 27 27 H 0.97000 * 119.99958 * 185.06884 * 13 12 10 28 28 H 1.09000 * 117.49331 * 0.02562 * 18 9 8 29 29 H 1.08998 * 117.50302 * 145.01999 * 18 9 8 30 30 H 1.09003 * 117.49587 * 214.98062 * 19 9 8 31 31 H 1.08997 * 117.49936 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0323 -0.7104 -1.2304 6 8 2.6530 -1.7467 -1.1214 7 7 1.7918 -0.1943 -2.4520 8 6 2.2807 -0.8847 -3.6481 9 6 1.8390 -0.1176 -4.8960 10 6 2.4295 1.2597 -5.0550 11 1 1.8874 2.1240 -4.7005 12 6 3.6617 1.4167 -5.6534 13 7 4.3782 0.3604 -5.9703 14 14 4.3136 3.1297 -6.0138 15 1 4.4314 3.8918 -4.7446 16 1 5.6493 3.0265 -6.6544 17 1 3.3786 3.8330 -6.9284 18 6 0.4063 -0.3331 -5.3877 19 6 1.5814 -0.9271 -6.1685 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 1.7209 -1.5951 1.2330 24 1 1.2957 0.6346 -2.5392 25 1 3.3691 -0.9355 -3.6189 26 1 1.8705 -1.8942 -3.6780 27 1 5.2749 0.4707 -6.3233 28 1 -0.2217 -1.0212 -4.8218 29 1 -0.1091 0.5211 -5.8265 30 1 1.8385 -0.4632 -7.1208 31 1 1.7270 -2.0061 -6.1167 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379362371.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:45 Heat of formation + Delta-G solvation = -76.809448 kcal Electronic energy + Delta-G solvation = -14421.929211 eV Core-core repulsion = 11896.733821 eV Total energy + Delta-G solvation = -2525.195390 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.49092 -37.01531 -36.04586 -33.47451 -32.01650 -30.75880 -26.52477 -25.36583 -23.58333 -21.24504 -19.94049 -19.42938 -17.60695 -16.23450 -15.98281 -15.35258 -14.77691 -14.54707 -14.09845 -13.82644 -13.29626 -12.77245 -12.47637 -12.10943 -11.82855 -11.63456 -11.48773 -11.03170 -10.95815 -10.62237 -10.56703 -10.31352 -9.68866 -9.13697 -9.01988 -8.53865 -8.33114 -8.13106 -6.11387 -4.20776 3.07802 3.24638 3.31092 3.31913 3.75873 4.32284 4.39671 5.00392 5.04248 5.15455 5.18082 5.34873 5.61799 5.82250 5.98611 6.00785 6.28608 6.41659 6.51086 6.64138 6.83048 7.04947 7.21042 7.38377 7.43524 7.59635 7.77400 8.21591 8.29200 8.76758 8.80851 9.46455 10.96388 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031266 B = 0.008824 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.323564 B = 3172.334053 C = 3504.796952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 H 0.122 0.878 4 O -0.544 6.544 5 C 0.474 3.526 6 O -0.553 6.553 7 N -0.698 5.698 8 C 0.161 3.839 9 C 0.028 3.972 10 C -0.503 4.503 11 H 0.060 0.940 12 C 0.074 3.926 13 N -0.874 5.874 14 Si 0.892 3.108 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.210 4.210 19 C -0.148 4.148 20 H 0.062 0.938 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.380 0.620 24 H 0.400 0.600 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.263 0.737 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.572 0.473 7.038 10.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.024 3.976 3 H 0.140 0.860 4 O -0.349 6.349 5 C 0.258 3.742 6 O -0.432 6.432 7 N -0.347 5.347 8 C 0.038 3.962 9 C 0.027 3.973 10 C -0.541 4.541 11 H 0.078 0.922 12 C -0.131 4.131 13 N -0.510 5.510 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.248 4.248 19 C -0.186 4.186 20 H 0.081 0.919 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.229 0.771 24 H 0.235 0.765 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.681 0.238 7.065 9.727 hybrid contribution 0.011 0.767 -0.568 0.955 sum -6.671 1.005 6.497 9.366 Atomic orbital electron populations 1.22428 0.94453 1.03231 1.03571 1.21837 0.94169 0.97410 0.84140 0.86048 1.86547 1.77771 1.29617 1.40964 1.21442 0.80745 0.86230 0.85763 1.90668 1.41397 1.24425 1.86755 1.46020 1.55679 1.27306 1.05733 1.21022 0.99602 0.92573 0.82971 1.19026 0.91852 0.95918 0.90513 1.20299 1.03750 0.90094 1.39951 0.92196 1.24998 0.96882 0.96608 0.94574 1.69963 1.09883 1.28703 1.42408 0.86677 0.78095 0.84618 0.78705 1.20202 1.21247 1.20179 1.23024 0.92444 1.02510 1.06793 1.22497 1.01377 0.96966 0.97789 0.91908 0.90945 0.90686 0.77119 0.76539 0.90916 0.94477 0.92714 0.91679 0.90314 0.89778 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.49 37.16 0.35 -1.54 16 2 C 0.09 1.21 4.00 -27.89 -0.11 1.10 16 3 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 4 O -0.54 -7.95 12.99 -55.09 -0.72 -8.67 16 5 C 0.47 8.71 7.17 -10.99 -0.08 8.63 16 6 O -0.55 -12.35 16.32 -14.31 -0.23 -12.59 16 7 N -0.70 -13.17 5.44 -60.29 -0.33 -13.49 16 8 C 0.16 3.63 5.50 -4.04 -0.02 3.61 16 9 C 0.03 0.64 1.38 -155.66 -0.21 0.42 16 10 C -0.50 -12.75 8.63 -34.44 -0.30 -13.05 16 11 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 12 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 13 N -0.87 -24.16 12.91 55.43 0.72 -23.44 16 14 Si 0.89 20.40 29.55 -169.99 -5.02 15.38 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C -0.21 -4.26 9.96 -26.69 -0.27 -4.53 16 19 C -0.15 -3.34 9.42 -26.69 -0.25 -3.59 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.07 0.74 7.92 -51.93 -0.41 0.33 16 23 H 0.38 4.60 8.79 45.56 0.40 5.00 16 24 H 0.40 6.76 8.15 -40.82 -0.33 6.43 16 25 H 0.07 1.90 8.14 -51.93 -0.42 1.48 16 26 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 27 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.08 2.02 8.14 -51.93 -0.42 1.59 16 31 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 273.69 15.07 4.12 4.12 Total: -1.00 -30.12 273.69 -6.14 -36.25 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -3.69 Total: 9.53 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -0.99 Total: -7.10 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.39 Total: -36.93 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.95 Total: -21.25 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.12 -6.14 -36.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379362371.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.556 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds