Wall clock time and date at job start Sun Mar 29 2020 21:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46993 * 2 1 4 4 O 1.42899 * 109.47047 * 119.99601 * 2 1 3 5 5 C 1.50693 * 109.47308 * 239.99672 * 2 1 3 6 6 O 1.21284 * 120.00300 * 245.00067 * 5 2 1 7 7 N 1.34782 * 120.00051 * 64.99557 * 5 2 1 8 8 C 1.46504 * 119.99909 * 179.97438 * 7 5 2 9 9 C 1.52999 * 109.46783 * 178.27907 * 8 7 5 10 10 C 1.50700 * 115.54496 * 65.14854 * 9 8 7 11 11 H 1.08004 * 120.00145 * 265.39553 * 10 9 8 12 12 C 1.37875 * 120.00322 * 85.40745 * 10 9 8 13 13 N 1.31517 * 119.99889 * 353.54579 * 12 10 9 14 14 Si 1.86798 * 120.00351 * 173.55590 * 12 10 9 15 15 H 1.48505 * 109.47377 * 59.99112 * 14 12 10 16 16 H 1.48498 * 109.47366 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47003 * 299.99401 * 14 12 10 18 18 C 1.52997 * 117.50496 * 279.47394 * 9 8 7 19 19 C 1.53000 * 117.49680 * 210.81038 * 9 8 7 20 20 H 1.09000 * 109.46994 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47147 * 300.00231 * 1 2 3 22 22 H 1.08996 * 109.47226 * 60.00449 * 1 2 3 23 23 H 0.96697 * 113.99966 * 59.99929 * 4 2 1 24 24 H 0.96998 * 119.99899 * 0.02562 * 7 5 2 25 25 H 1.08998 * 109.47202 * 298.28780 * 8 7 5 26 26 H 1.08999 * 109.46637 * 58.28628 * 8 7 5 27 27 H 0.97000 * 119.99958 * 185.06884 * 13 12 10 28 28 H 1.09000 * 117.49331 * 0.02562 * 18 9 8 29 29 H 1.08998 * 117.50302 * 145.01999 * 18 9 8 30 30 H 1.09003 * 117.49587 * 214.98062 * 19 9 8 31 31 H 1.08997 * 117.49936 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0323 -0.7104 -1.2304 6 8 2.6530 -1.7467 -1.1214 7 7 1.7918 -0.1943 -2.4520 8 6 2.2807 -0.8847 -3.6481 9 6 1.8390 -0.1176 -4.8960 10 6 2.4295 1.2597 -5.0550 11 1 1.8874 2.1240 -4.7005 12 6 3.6617 1.4167 -5.6534 13 7 4.3782 0.3604 -5.9703 14 14 4.3136 3.1297 -6.0138 15 1 4.4314 3.8918 -4.7446 16 1 5.6493 3.0265 -6.6544 17 1 3.3786 3.8330 -6.9284 18 6 0.4063 -0.3331 -5.3877 19 6 1.5814 -0.9271 -6.1685 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 1.7209 -1.5951 1.2330 24 1 1.2957 0.6346 -2.5392 25 1 3.3691 -0.9355 -3.6189 26 1 1.8705 -1.8942 -3.6780 27 1 5.2749 0.4707 -6.3233 28 1 -0.2217 -1.0212 -4.8218 29 1 -0.1091 0.5211 -5.8265 30 1 1.8385 -0.4632 -7.1208 31 1 1.7270 -2.0061 -6.1167 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379362371.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:45 Heat of formation + Delta-G solvation = -98.672798 kcal Electronic energy + Delta-G solvation = -14422.877277 eV Core-core repulsion = 11896.733821 eV Total energy + Delta-G solvation = -2526.143456 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.95577 -38.66220 -37.38433 -35.08827 -33.98147 -31.85391 -28.19539 -27.21640 -24.82199 -22.96656 -21.44133 -21.17004 -19.06438 -17.95578 -17.39872 -16.68518 -16.61447 -16.12742 -15.57336 -15.27495 -14.91859 -14.40457 -13.75899 -13.48656 -13.31248 -13.07018 -12.93575 -12.79474 -12.68928 -12.39578 -12.04608 -11.70793 -11.48533 -10.87509 -10.64362 -10.45119 -10.03809 -9.85960 -8.10541 -6.24083 1.43728 1.45042 1.51474 1.62715 2.30368 2.42799 3.17758 3.33840 3.47895 3.87957 4.04539 4.17500 4.24351 4.54446 4.63750 4.71152 4.81932 4.90814 4.99237 5.02784 5.22240 5.26783 5.55622 5.59415 5.66086 5.77298 6.35469 6.53189 6.77121 6.84395 7.31624 7.45946 8.96781 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031266 B = 0.008824 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.323564 B = 3172.334053 C = 3504.796952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.096 3.904 3 H 0.137 0.863 4 O -0.556 6.556 5 C 0.469 3.531 6 O -0.598 6.598 7 N -0.691 5.691 8 C 0.177 3.823 9 C 0.005 3.995 10 C -0.506 4.506 11 H 0.067 0.933 12 C 0.023 3.977 13 N -0.909 5.909 14 Si 0.950 3.050 15 H -0.270 1.270 16 H -0.294 1.294 17 H -0.269 1.269 18 C -0.173 4.173 19 C -0.163 4.163 20 H 0.063 0.937 21 H 0.094 0.906 22 H 0.084 0.916 23 H 0.390 0.610 24 H 0.412 0.588 25 H 0.026 0.974 26 H 0.036 0.964 27 H 0.258 0.742 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 1.774 7.984 12.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.034 3.966 3 H 0.155 0.845 4 O -0.363 6.363 5 C 0.257 3.743 6 O -0.480 6.480 7 N -0.342 5.342 8 C 0.052 3.948 9 C 0.004 3.996 10 C -0.543 4.543 11 H 0.085 0.915 12 C -0.178 4.178 13 N -0.547 5.547 14 Si 0.776 3.224 15 H -0.195 1.195 16 H -0.220 1.220 17 H -0.194 1.194 18 C -0.210 4.210 19 C -0.201 4.201 20 H 0.082 0.918 21 H 0.113 0.887 22 H 0.103 0.897 23 H 0.240 0.760 24 H 0.249 0.751 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.543 1.568 8.024 11.825 hybrid contribution 0.562 0.325 -0.838 1.059 sum -7.982 1.893 7.187 10.906 Atomic orbital electron populations 1.22393 0.91318 1.03881 1.05188 1.21948 0.96393 0.97013 0.81232 0.84516 1.86524 1.78351 1.30540 1.40860 1.22430 0.79521 0.85679 0.86717 1.90646 1.43323 1.26631 1.87426 1.45894 1.55646 1.27582 1.05061 1.20572 0.96751 0.93012 0.84443 1.19047 0.94452 0.95302 0.90782 1.20664 1.03566 0.91338 1.38766 0.91477 1.25739 0.97533 0.99671 0.94871 1.70102 1.10007 1.30583 1.43970 0.85737 0.77149 0.80817 0.78654 1.19475 1.21975 1.19420 1.23013 0.91035 1.02434 1.04483 1.22444 1.03723 0.97118 0.96839 0.91800 0.88674 0.89676 0.76015 0.75118 0.95589 0.94581 0.93262 0.89107 0.89381 0.91872 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.49 71.98 0.68 -2.31 16 2 C 0.10 2.44 4.00 29.85 0.12 2.56 16 3 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 4 O -0.56 -15.19 12.99 -129.99 -1.69 -16.88 16 5 C 0.47 16.80 7.17 87.65 0.63 17.43 16 6 O -0.60 -26.86 16.32 15.95 0.26 -26.60 16 7 N -0.69 -25.33 5.44 -463.05 -2.52 -27.84 16 8 C 0.18 7.99 5.50 86.38 0.48 8.46 16 9 C 0.00 0.22 1.38 -52.93 -0.07 0.15 16 10 C -0.51 -25.22 8.63 25.60 0.22 -25.00 16 11 H 0.07 3.18 7.82 -2.91 -0.02 3.16 16 12 C 0.02 1.18 5.39 84.65 0.46 1.64 16 13 N -0.91 -51.39 12.91 21.45 0.28 -51.12 16 14 Si 0.95 41.74 29.55 68.60 2.03 43.76 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 16 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 18 C -0.17 -6.56 9.96 30.62 0.30 -6.26 16 19 C -0.16 -7.30 9.42 30.62 0.29 -7.02 16 20 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.08 1.35 7.92 -2.39 -0.02 1.33 16 23 H 0.39 8.86 8.79 -74.06 -0.65 8.21 16 24 H 0.41 13.02 8.15 -92.71 -0.76 12.26 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.61 8.09 -2.39 -0.02 1.59 16 27 H 0.26 14.20 8.32 -92.71 -0.77 13.43 16 28 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 29 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -65.06 273.69 1.19 -63.88 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.27 Total: 25.15 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 3.10 Total: -10.35 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -2.24 Total: -78.96 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.43 Total: -43.48 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -65.06 1.19 -63.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379362371.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.796 kcal (2) G-P(sol) polarization free energy of solvation -65.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds