Wall clock time and date at job start Sun Mar 29 2020 21:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47591 * 2 1 4 4 O 1.42901 * 109.47211 * 239.99516 * 2 1 3 5 5 C 1.50705 * 109.47022 * 119.99908 * 2 1 3 6 6 O 1.21275 * 120.00164 * 113.95171 * 5 2 1 7 7 N 1.34783 * 119.99820 * 293.95387 * 5 2 1 8 8 C 1.46495 * 119.99815 * 185.01321 * 7 5 2 9 9 C 1.53004 * 109.47189 * 174.92702 * 8 7 5 10 10 C 1.50697 * 115.54640 * 304.47272 * 9 8 7 11 11 H 1.08003 * 119.99411 * 95.13007 * 10 9 8 12 12 C 1.37870 * 120.00231 * 275.12048 * 10 9 8 13 13 N 1.31518 * 120.00120 * 5.28281 * 12 10 9 14 14 Si 1.86799 * 120.00027 * 185.27531 * 12 10 9 15 15 H 1.48502 * 109.46976 * 90.00334 * 14 12 10 16 16 H 1.48504 * 109.47321 * 210.00543 * 14 12 10 17 17 H 1.48503 * 109.47339 * 330.00208 * 14 12 10 18 18 C 1.53000 * 117.49652 * 158.80180 * 9 8 7 19 19 C 1.53004 * 117.49692 * 90.14289 * 9 8 7 20 20 H 1.08999 * 109.47473 * 175.15902 * 1 2 3 21 21 H 1.09004 * 109.47096 * 295.15876 * 1 2 3 22 22 H 1.08996 * 109.47349 * 55.15491 * 1 2 3 23 23 H 0.96702 * 113.99508 * 300.00890 * 4 2 1 24 24 H 0.96995 * 119.99437 * 5.00519 * 7 5 2 25 25 H 1.09007 * 109.47043 * 294.92795 * 8 7 5 26 26 H 1.09001 * 109.47536 * 54.92698 * 8 7 5 27 27 H 0.96995 * 119.99913 * 185.00133 * 13 12 10 28 28 H 1.08994 * 117.50339 * 0.02562 * 18 9 8 29 29 H 1.08999 * 117.49367 * 145.02122 * 18 9 8 30 30 H 1.08993 * 117.49498 * 214.97785 * 19 9 8 31 31 H 1.08999 * 117.49834 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2305 6 8 2.6364 -1.7564 1.1227 7 7 1.8101 -0.1832 2.4509 8 6 2.3916 -0.8142 3.6383 9 6 2.0954 0.0450 4.8692 10 6 2.5460 1.4805 4.7834 11 1 1.8532 2.2457 4.4658 12 6 3.8423 1.8168 5.1106 13 7 4.7139 0.8745 5.3970 14 14 4.3609 3.6110 5.1470 15 1 4.1375 4.1633 6.5073 16 1 5.8009 3.7173 4.7999 17 1 3.5566 4.3789 4.1627 18 6 2.1607 -0.6355 6.2379 19 6 0.8063 -0.2461 5.6402 20 1 -0.3634 -1.0240 -0.0867 21 1 -0.3633 0.4369 0.9302 22 1 -0.3634 0.5871 -0.8434 23 1 1.7209 -1.5953 -1.2328 24 1 1.2653 0.6140 2.5429 25 1 1.9567 -1.8046 3.7732 26 1 3.4702 -0.9054 3.5099 27 1 5.6048 1.1130 5.6974 28 1 2.4151 -1.6951 6.2616 29 1 2.5292 -0.0447 7.0765 30 1 0.2844 0.6006 6.0859 31 1 0.1691 -1.0494 5.2704 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379362372.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:47 Heat of formation + Delta-G solvation = -98.625515 kcal Electronic energy + Delta-G solvation = -14456.792781 eV Core-core repulsion = 11930.651376 eV Total energy + Delta-G solvation = -2526.141405 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.94617 -38.65552 -37.38626 -35.08061 -33.98624 -31.85921 -28.16701 -27.22828 -24.82765 -22.95242 -21.44836 -21.16274 -19.06733 -17.96823 -17.38880 -16.67585 -16.58104 -16.13970 -15.55435 -15.28748 -14.90185 -14.39978 -13.77909 -13.48741 -13.32586 -13.07429 -12.98429 -12.77088 -12.68820 -12.37621 -12.03466 -11.71176 -11.47837 -10.85991 -10.63982 -10.43423 -10.05829 -9.81382 -8.11094 -6.24506 1.42766 1.45378 1.52983 1.62650 2.32729 2.43747 3.18624 3.33858 3.47639 3.89001 4.04576 4.17454 4.25639 4.53104 4.66340 4.69833 4.81328 4.90348 5.00203 5.03131 5.21628 5.27004 5.52451 5.60715 5.67572 5.77420 6.35442 6.54030 6.78263 6.84869 7.32521 7.46321 8.97105 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028459 B = 0.009501 C = 0.008296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.641626 B = 2946.341009 C = 3374.255144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.096 3.904 3 H 0.135 0.865 4 O -0.557 6.557 5 C 0.470 3.530 6 O -0.598 6.598 7 N -0.690 5.690 8 C 0.176 3.824 9 C 0.003 3.997 10 C -0.500 4.500 11 H 0.068 0.932 12 C 0.023 3.977 13 N -0.909 5.909 14 Si 0.948 3.052 15 H -0.278 1.278 16 H -0.296 1.296 17 H -0.259 1.259 18 C -0.163 4.163 19 C -0.174 4.174 20 H 0.066 0.934 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.390 0.610 24 H 0.412 0.588 25 H 0.038 0.962 26 H 0.026 0.974 27 H 0.257 0.743 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.977 0.851 -6.729 12.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.033 3.967 3 H 0.152 0.848 4 O -0.363 6.363 5 C 0.257 3.743 6 O -0.480 6.480 7 N -0.340 5.340 8 C 0.051 3.949 9 C 0.003 3.997 10 C -0.538 4.538 11 H 0.086 0.914 12 C -0.178 4.178 13 N -0.546 5.546 14 Si 0.774 3.226 15 H -0.204 1.204 16 H -0.222 1.222 17 H -0.183 1.183 18 C -0.201 4.201 19 C -0.211 4.211 20 H 0.085 0.915 21 H 0.101 0.899 22 H 0.113 0.887 23 H 0.240 0.760 24 H 0.249 0.751 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.067 0.676 -6.931 11.433 hybrid contribution 0.541 0.434 0.714 0.995 sum -8.526 1.110 -6.217 10.610 Atomic orbital electron populations 1.22396 0.91236 1.04076 1.05042 1.21952 0.96497 0.96911 0.81319 0.84767 1.86526 1.78361 1.30535 1.40882 1.22389 0.79538 0.85640 0.86730 1.90633 1.44371 1.25614 1.87427 1.45840 1.51577 1.31061 1.05537 1.20578 0.95742 0.93557 0.85023 1.19085 0.97338 0.94648 0.88674 1.20676 0.95517 0.91587 1.46034 0.91375 1.25719 0.96591 1.00491 0.94988 1.70139 1.05451 1.33790 1.45255 0.85708 0.76997 0.81280 0.78601 1.20387 1.22241 1.18336 1.22428 1.00741 0.98330 0.98629 1.23049 0.90217 1.02345 1.05507 0.91474 0.89878 0.88694 0.75992 0.75111 0.94399 0.95583 0.93356 0.91260 0.91842 0.89374 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.51 71.98 0.68 -2.40 16 2 C 0.10 2.52 4.00 29.85 0.12 2.64 16 3 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 4 O -0.56 -15.68 13.00 -130.01 -1.69 -17.37 16 5 C 0.47 17.20 7.15 87.66 0.63 17.83 16 6 O -0.60 -27.15 16.33 15.95 0.26 -26.89 16 7 N -0.69 -25.76 5.29 -463.05 -2.45 -28.22 16 8 C 0.18 7.93 5.56 86.38 0.48 8.41 16 9 C 0.00 0.15 1.49 -52.93 -0.08 0.07 16 10 C -0.50 -24.73 8.26 25.60 0.21 -24.51 16 11 H 0.07 3.19 7.82 -2.91 -0.02 3.17 16 12 C 0.02 1.19 5.40 84.65 0.46 1.64 16 13 N -0.91 -51.31 12.90 21.45 0.28 -51.03 16 14 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 15 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.30 -13.32 7.11 99.48 0.71 -12.62 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 18 C -0.16 -7.29 9.45 30.62 0.29 -7.00 16 19 C -0.17 -6.64 9.93 30.62 0.30 -6.34 16 20 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.08 1.38 7.72 -2.38 -0.02 1.37 16 22 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.39 9.10 8.78 -74.06 -0.65 8.45 16 24 H 0.41 13.38 7.79 -92.71 -0.72 12.66 16 25 H 0.04 1.66 8.10 -2.38 -0.02 1.64 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 28 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -64.84 272.80 1.28 -63.56 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -0.24 Total: 26.07 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 3.09 Total: -9.67 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -2.17 Total: -79.25 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -1.43 Total: -44.26 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -64.84 1.28 -63.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379362372.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.067 kcal (2) G-P(sol) polarization free energy of solvation -64.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds