Wall clock time and date at job start Sun Mar 29 2020 22:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42891 * 109.47402 * 2 1 4 4 C 1.42898 * 114.00341 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47172 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00349 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00104 * 180.02562 * 5 4 3 8 8 C 1.37091 * 120.00103 * 179.97438 * 7 5 4 9 9 H 1.08001 * 120.00178 * 223.51677 * 8 7 5 10 10 C 1.38946 * 120.00175 * 43.52625 * 8 7 5 11 11 N 1.31414 * 119.99875 * 22.94401 * 10 8 7 12 12 Si 1.86796 * 120.00078 * 202.94836 * 10 8 7 13 13 H 1.48507 * 109.47196 * 269.99392 * 12 10 8 14 14 H 1.48501 * 109.47118 * 29.99757 * 12 10 8 15 15 H 1.48505 * 109.47338 * 149.99896 * 12 10 8 16 16 C 1.46508 * 119.99521 * 359.97438 * 7 5 4 17 17 C 1.53002 * 117.49453 * 187.01084 * 16 7 5 18 18 C 1.53004 * 60.00148 * 252.51359 * 17 16 7 19 19 H 1.09001 * 109.46902 * 60.00174 * 1 2 3 20 20 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47111 * 299.99617 * 1 2 3 22 22 H 1.09008 * 109.46749 * 240.00047 * 2 1 3 23 23 H 1.08997 * 109.47294 * 120.00446 * 2 1 3 24 24 H 1.09001 * 109.47354 * 60.00002 * 4 3 2 25 25 H 1.08993 * 109.47026 * 300.00121 * 4 3 2 26 26 H 0.96997 * 120.00505 * 6.11795 * 11 10 8 27 27 H 1.08999 * 115.55190 * 332.72047 * 16 7 5 28 28 H 1.08996 * 117.49764 * 0.02562 * 17 16 7 29 29 H 1.08999 * 117.49659 * 145.02224 * 17 16 7 30 30 H 1.08998 * 117.50051 * 252.51877 * 18 17 16 31 31 H 1.09000 * 117.51908 * 107.48332 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8195 2.9161 0.0012 6 8 2.9610 3.7729 0.0006 7 7 5.1210 3.2662 0.0013 8 6 5.4745 4.5908 0.0012 9 1 6.2691 4.9377 -0.6427 10 6 4.8106 5.4871 0.8299 11 7 4.1907 5.0531 1.9043 12 14 4.7992 7.3087 0.4166 13 1 5.9671 7.9683 1.0541 14 1 4.8754 7.4826 -1.0562 15 1 3.5460 7.9235 0.9234 16 6 6.1579 2.2313 0.0013 17 6 7.6095 2.6857 0.1671 18 6 7.1139 2.1890 -1.1926 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 1.8933 -0.5139 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.8341 0.9764 -0.8892 25 1 3.8332 0.9766 0.8907 26 1 4.2701 4.1230 2.1677 27 1 5.8732 1.2805 0.4521 28 1 7.7928 3.7545 0.2765 29 1 8.2800 2.0339 0.7271 30 1 7.4583 1.2104 -1.5270 31 1 6.9710 2.9309 -1.9782 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379369946.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:48 Heat of formation + Delta-G solvation = -46.343075 kcal Electronic energy + Delta-G solvation = -14658.785082 eV Core-core repulsion = 12134.910813 eV Total energy + Delta-G solvation = -2523.874269 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.94049 -37.34612 -35.99243 -32.95138 -31.32372 -30.72230 -27.26753 -24.08329 -22.53710 -21.81001 -21.35809 -19.50092 -16.78945 -16.50118 -16.12779 -15.89108 -14.64383 -14.06039 -13.95622 -13.64213 -13.42579 -12.73820 -12.58128 -12.23315 -11.60660 -11.48429 -11.04329 -10.86235 -10.83515 -10.70976 -10.25539 -10.06251 -9.89503 -9.71462 -9.26813 -8.64245 -8.04353 -7.33140 -6.36014 -3.88347 3.43068 3.55501 3.68995 3.80903 3.89712 4.45623 4.64139 4.86243 5.19090 5.26580 5.37976 5.43417 5.49197 5.58996 5.64632 5.66377 5.76550 5.81290 5.97509 6.07161 6.13194 6.25660 6.31945 6.62944 6.85565 7.50153 7.91419 8.40307 8.82686 9.17717 9.56194 10.09061 10.92236 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026174 B = 0.011143 C = 0.008328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.504981 B = 2512.141452 C = 3361.220803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.053 3.947 5 C 0.461 3.539 6 O -0.516 6.516 7 N -0.431 5.431 8 C -0.430 4.430 9 H 0.072 0.928 10 C 0.038 3.962 11 N -0.843 5.843 12 Si 1.078 2.922 13 H -0.290 1.290 14 H -0.286 1.286 15 H -0.280 1.280 16 C 0.064 3.936 17 C -0.172 4.172 18 C -0.202 4.202 19 H 0.063 0.937 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.270 0.730 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.669 -9.889 -3.078 10.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.279 6.279 4 C -0.028 4.028 5 C 0.248 3.752 6 O -0.392 6.392 7 N -0.155 5.155 8 C -0.556 4.556 9 H 0.089 0.911 10 C -0.175 4.175 11 N -0.473 5.473 12 Si 0.905 3.095 13 H -0.217 1.217 14 H -0.212 1.212 15 H -0.206 1.206 16 C -0.042 4.042 17 C -0.209 4.209 18 C -0.241 4.241 19 H 0.082 0.918 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.426 -7.825 -2.586 8.252 hybrid contribution 1.002 -2.058 -0.460 2.335 sum 1.428 -9.883 -3.046 10.440 Atomic orbital electron populations 1.21704 0.93914 1.01583 1.03404 1.22458 0.95673 0.84713 0.99477 1.88059 1.19866 1.24805 1.95200 1.22314 0.82245 0.97964 1.00239 1.19823 0.83638 0.88639 0.83131 1.90633 1.48182 1.50978 1.49437 1.42907 1.01512 1.04758 1.66297 1.19744 1.25970 0.82324 1.27530 0.91053 1.26221 0.93475 1.06064 0.91703 1.70535 1.37708 1.18790 1.20290 0.83405 0.76562 0.73768 0.75737 1.21706 1.21206 1.20579 1.21805 0.87397 0.93715 1.01313 1.23085 0.96075 1.02946 0.98812 1.23276 1.06135 1.01856 0.92878 0.91838 0.91501 0.91759 0.93852 0.93836 0.92040 0.92430 0.91921 0.88054 0.87256 0.89702 0.89696 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 37.16 0.38 -1.55 16 2 C 0.05 0.81 6.66 37.16 0.25 1.06 16 3 O -0.36 -7.66 9.88 -55.14 -0.54 -8.20 16 4 C 0.05 1.09 4.99 36.01 0.18 1.27 16 5 C 0.46 12.28 6.51 -10.98 -0.07 12.21 16 6 O -0.52 -16.30 14.37 -14.36 -0.21 -16.51 16 7 N -0.43 -11.04 2.60 -107.72 -0.28 -11.32 16 8 C -0.43 -12.06 7.76 -14.94 -0.12 -12.18 16 9 H 0.07 1.95 7.43 -52.49 -0.39 1.56 16 10 C 0.04 1.13 4.22 -17.47 -0.07 1.05 16 11 N -0.84 -26.36 12.36 55.50 0.69 -25.68 16 12 Si 1.08 26.26 29.98 -169.99 -5.10 21.16 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 C 0.06 1.27 5.96 -67.92 -0.40 0.87 16 17 C -0.17 -3.10 9.81 -26.73 -0.26 -3.36 16 18 C -0.20 -3.48 10.30 -26.73 -0.28 -3.76 16 19 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 20 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 25 H 0.06 1.06 7.57 -51.93 -0.39 0.67 16 26 H 0.27 8.54 7.42 -40.82 -0.30 8.24 16 27 H 0.10 1.76 6.84 -51.93 -0.36 1.40 16 28 H 0.11 2.22 6.82 -51.93 -0.35 1.87 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 LS Contribution 266.30 15.07 4.01 4.01 Total: -1.00 -34.97 266.30 -6.22 -41.19 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.39 Total: -0.26 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -0.39 Total: -4.39 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.41 Total: -37.00 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.75 Total: -24.71 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -5.10 Total: 21.16 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.97 -6.22 -41.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379369946.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.156 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds