Wall clock time and date at job start Sun Mar 29 2020 22:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42891 * 109.47402 * 2 1 4 4 C 1.42898 * 114.00341 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47172 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00349 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00104 * 180.02562 * 5 4 3 8 8 C 1.37091 * 120.00103 * 179.97438 * 7 5 4 9 9 H 1.08001 * 120.00178 * 223.51677 * 8 7 5 10 10 C 1.38946 * 120.00175 * 43.52625 * 8 7 5 11 11 N 1.31414 * 119.99875 * 22.94401 * 10 8 7 12 12 Si 1.86796 * 120.00078 * 202.94836 * 10 8 7 13 13 H 1.48507 * 109.47196 * 269.99392 * 12 10 8 14 14 H 1.48501 * 109.47118 * 29.99757 * 12 10 8 15 15 H 1.48505 * 109.47338 * 149.99896 * 12 10 8 16 16 C 1.46508 * 119.99521 * 359.97438 * 7 5 4 17 17 C 1.53002 * 117.49453 * 187.01084 * 16 7 5 18 18 C 1.53004 * 60.00148 * 252.51359 * 17 16 7 19 19 H 1.09001 * 109.46902 * 60.00174 * 1 2 3 20 20 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47111 * 299.99617 * 1 2 3 22 22 H 1.09008 * 109.46749 * 240.00047 * 2 1 3 23 23 H 1.08997 * 109.47294 * 120.00446 * 2 1 3 24 24 H 1.09001 * 109.47354 * 60.00002 * 4 3 2 25 25 H 1.08993 * 109.47026 * 300.00121 * 4 3 2 26 26 H 0.96997 * 120.00505 * 6.11795 * 11 10 8 27 27 H 1.08999 * 115.55190 * 332.72047 * 16 7 5 28 28 H 1.08996 * 117.49764 * 0.02562 * 17 16 7 29 29 H 1.08999 * 117.49659 * 145.02224 * 17 16 7 30 30 H 1.08998 * 117.50051 * 252.51877 * 18 17 16 31 31 H 1.09000 * 117.51908 * 107.48332 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8195 2.9161 0.0012 6 8 2.9610 3.7729 0.0006 7 7 5.1210 3.2662 0.0013 8 6 5.4745 4.5908 0.0012 9 1 6.2691 4.9377 -0.6427 10 6 4.8106 5.4871 0.8299 11 7 4.1907 5.0531 1.9043 12 14 4.7992 7.3087 0.4166 13 1 5.9671 7.9683 1.0541 14 1 4.8754 7.4826 -1.0562 15 1 3.5460 7.9235 0.9234 16 6 6.1579 2.2313 0.0013 17 6 7.6095 2.6857 0.1671 18 6 7.1139 2.1890 -1.1926 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 1.8933 -0.5139 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.8341 0.9764 -0.8892 25 1 3.8332 0.9766 0.8907 26 1 4.2701 4.1230 2.1677 27 1 5.8732 1.2805 0.4521 28 1 7.7928 3.7545 0.2765 29 1 8.2800 2.0339 0.7271 30 1 7.4583 1.2104 -1.5270 31 1 6.9710 2.9309 -1.9782 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379369946.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:48 Heat of formation + Delta-G solvation = -70.226594 kcal Electronic energy + Delta-G solvation = -14659.820749 eV Core-core repulsion = 12134.910813 eV Total energy + Delta-G solvation = -2524.909936 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.78730 -38.83967 -37.74536 -34.98005 -33.00485 -32.24565 -29.01584 -26.07958 -23.68820 -23.27163 -22.99389 -21.44716 -18.76113 -18.20949 -17.66960 -17.31051 -16.39599 -15.89764 -15.56299 -15.48851 -15.02421 -14.37915 -14.10118 -13.44157 -13.23172 -13.19341 -12.67186 -12.34995 -12.27434 -12.13379 -12.02223 -11.92742 -11.80812 -11.35310 -10.69657 -10.64933 -10.07290 -9.36645 -8.58453 -6.09868 1.46348 1.59817 1.75622 2.00509 2.23409 2.59924 3.04933 3.22537 3.29772 3.85953 3.98402 4.12155 4.14870 4.15938 4.25379 4.33916 4.40110 4.45357 4.79020 4.82052 4.93183 4.99383 5.17690 5.23177 5.40678 5.70319 6.12997 6.19488 6.83160 7.10759 7.47043 8.07921 8.67223 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026174 B = 0.011143 C = 0.008328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.504981 B = 2512.141452 C = 3361.220803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.405 6.405 4 C 0.068 3.932 5 C 0.441 3.559 6 O -0.584 6.584 7 N -0.445 5.445 8 C -0.434 4.434 9 H 0.072 0.928 10 C -0.013 4.013 11 N -0.878 5.878 12 Si 1.117 2.883 13 H -0.258 1.258 14 H -0.275 1.275 15 H -0.294 1.294 16 C 0.032 3.968 17 C -0.168 4.168 18 C -0.175 4.175 19 H 0.053 0.947 20 H 0.105 0.895 21 H 0.048 0.952 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.254 0.746 27 H 0.135 0.865 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 -12.050 -3.861 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.324 6.324 4 C -0.012 4.012 5 C 0.230 3.770 6 O -0.465 6.465 7 N -0.167 5.167 8 C -0.560 4.560 9 H 0.089 0.911 10 C -0.219 4.219 11 N -0.510 5.510 12 Si 0.939 3.061 13 H -0.183 1.183 14 H -0.201 1.201 15 H -0.220 1.220 16 C -0.072 4.072 17 C -0.206 4.206 18 C -0.214 4.214 19 H 0.072 0.928 20 H 0.123 0.877 21 H 0.068 0.932 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.112 0.888 25 H 0.100 0.900 26 H 0.063 0.937 27 H 0.152 0.848 28 H 0.097 0.903 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.845 -10.028 -3.381 10.742 hybrid contribution 0.619 -1.494 -0.293 1.644 sum 2.464 -11.522 -3.673 12.342 Atomic orbital electron populations 1.21765 0.92862 1.03669 1.02200 1.22832 0.96616 0.82254 1.01483 1.88019 1.20012 1.28793 1.95601 1.22126 0.82728 0.93583 1.02760 1.20954 0.83367 0.91026 0.81646 1.90575 1.50070 1.53427 1.52447 1.43143 1.02847 1.05257 1.65432 1.19926 1.25233 0.84258 1.26623 0.91056 1.27553 0.93009 1.09916 0.91393 1.70655 1.40437 1.17731 1.22178 0.82944 0.77050 0.69858 0.76288 1.18338 1.20073 1.21989 1.22202 0.86855 0.93542 1.04640 1.23142 0.95220 1.02046 1.00188 1.23308 1.03255 1.03404 0.91399 0.92818 0.87690 0.93240 0.91423 0.92000 0.88763 0.90014 0.93691 0.84809 0.90294 0.85934 0.85134 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 10.28 71.98 0.74 -2.85 16 2 C 0.04 1.21 6.66 71.98 0.48 1.69 16 3 O -0.40 -16.88 9.88 -129.95 -1.28 -18.16 16 4 C 0.07 2.68 4.99 71.24 0.36 3.04 16 5 C 0.44 23.76 6.51 87.66 0.57 24.33 16 6 O -0.58 -38.32 14.37 15.99 0.23 -38.09 16 7 N -0.44 -22.75 2.60 -613.11 -1.59 -24.35 16 8 C -0.43 -24.74 7.76 84.04 0.65 -24.09 16 9 H 0.07 3.95 7.43 -2.91 -0.02 3.93 16 10 C -0.01 -0.76 4.22 84.92 0.36 -0.40 16 11 N -0.88 -56.87 12.36 21.66 0.27 -56.60 16 12 Si 1.12 53.90 29.98 68.60 2.06 55.96 16 13 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 15 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 16 C 0.03 1.20 5.96 44.99 0.27 1.47 16 17 C -0.17 -5.64 9.81 30.60 0.30 -5.34 16 18 C -0.18 -5.41 10.30 30.60 0.32 -5.09 16 19 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 20 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.09 3.06 8.11 -2.39 -0.02 3.04 16 25 H 0.08 2.80 7.57 -2.39 -0.02 2.78 16 26 H 0.25 16.71 7.42 -92.71 -0.69 16.03 16 27 H 0.13 4.11 6.84 -2.39 -0.02 4.09 16 28 H 0.08 3.15 6.82 -2.39 -0.02 3.13 16 29 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -80.71 266.30 4.90 -75.81 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.19 Total: 12.66 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 4.04 Total: -7.23 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -1.33 Total: -80.95 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -1.05 Total: -56.25 kcal Atomic # 14 Polarization: 53.90 SS G_CDS: 2.06 Total: 55.96 kcal Total: -80.71 4.90 -75.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379369946.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.581 kcal (2) G-P(sol) polarization free energy of solvation -80.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds