Wall clock time and date at job start Sun Mar 29 2020 21:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47545 * 2 1 4 4 O 1.42896 * 109.47249 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47166 * 120.00252 * 2 1 3 6 6 C 1.34777 * 119.99718 * 299.89542 * 5 2 1 7 7 O 1.21694 * 120.00240 * 359.97438 * 6 5 2 8 8 C 1.46377 * 119.99920 * 180.02562 * 6 5 2 9 9 H 1.07999 * 119.99836 * 0.02562 * 8 6 5 10 10 C 1.40048 * 119.99832 * 179.97438 * 8 6 5 11 11 N 1.30671 * 120.00140 * 359.97438 * 10 8 6 12 12 Si 1.86801 * 119.99953 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47242 * 89.99624 * 12 10 8 14 14 H 1.48506 * 109.47169 * 210.00276 * 12 10 8 15 15 H 1.48507 * 109.46808 * 329.99772 * 12 10 8 16 16 C 1.53000 * 109.46859 * 239.99735 * 2 1 3 17 17 C 1.52998 * 117.52058 * 354.65404 * 16 2 1 18 18 C 1.52998 * 117.49880 * 63.28485 * 16 2 1 19 19 H 1.09002 * 109.47238 * 180.02562 * 1 2 3 20 20 H 1.09007 * 109.46817 * 299.99921 * 1 2 3 21 21 H 1.08996 * 109.47293 * 60.00032 * 1 2 3 22 22 H 1.09005 * 109.46904 * 300.00116 * 3 2 1 23 23 H 1.08995 * 109.47008 * 59.99719 * 3 2 1 24 24 H 0.96703 * 113.99547 * 179.97438 * 4 3 2 25 25 H 0.96998 * 120.00465 * 119.90064 * 5 2 1 26 26 H 0.97006 * 119.99862 * 179.97438 * 11 10 8 27 27 H 1.09009 * 115.54961 * 208.95165 * 16 2 1 28 28 H 1.08998 * 117.49818 * 214.96893 * 17 16 2 29 29 H 1.09002 * 117.49345 * 359.97438 * 17 16 2 30 30 H 1.09002 * 117.49736 * 359.97190 * 18 16 2 31 31 H 1.09000 * 117.50319 * 144.97241 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 7 2.0184 -0.6907 1.1962 6 6 1.6945 -0.2290 2.4203 7 8 0.9968 0.7618 2.5320 8 6 2.1828 -0.9187 3.6154 9 1 2.8030 -1.7973 3.5163 10 6 1.8467 -0.4386 4.8874 11 7 1.0976 0.6253 5.0073 12 14 2.4705 -1.3184 6.4126 13 1 3.7799 -0.7445 6.8144 14 1 1.4940 -1.1455 7.5180 15 1 2.6336 -2.7648 6.1179 16 6 2.0399 -0.7213 -1.2492 17 6 1.0018 -1.3892 -2.1532 18 6 1.7002 -0.1062 -2.6083 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 1.6768 1.9563 -0.8900 23 1 1.6768 1.9563 0.8899 24 1 3.8624 2.3258 0.0002 25 1 2.5748 -1.4802 1.1072 26 1 0.8645 0.9575 5.8883 27 1 3.0080 -1.2118 -1.1466 28 1 1.2869 -2.3191 -2.6453 29 1 -0.0447 -1.3152 -1.8577 30 1 1.1129 0.8121 -2.6124 31 1 2.4447 -0.1917 -3.3998 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379378864.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:02 Heat of formation + Delta-G solvation = -89.899630 kcal Electronic energy + Delta-G solvation = -14863.670107 eV Core-core repulsion = 12337.907084 eV Total energy + Delta-G solvation = -2525.763023 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.68755 -38.32105 -36.99952 -34.89387 -34.10094 -31.33535 -28.13415 -27.21456 -24.75353 -23.00305 -21.79240 -19.82201 -19.03634 -18.18632 -17.61926 -17.13970 -16.00347 -15.84283 -15.27438 -15.03112 -14.58620 -14.05856 -13.89573 -13.28792 -13.13764 -12.93130 -12.71129 -12.64432 -12.54778 -12.09715 -12.00536 -11.61464 -11.26058 -10.97570 -10.85416 -10.79420 -9.56367 -9.28946 -8.22919 -6.79184 1.39377 1.40854 1.55239 2.25769 2.53064 2.85452 3.19442 3.46969 3.69860 3.78494 4.07880 4.16766 4.33193 4.42902 4.54934 4.65927 4.79511 4.85629 4.88323 5.02997 5.16566 5.26838 5.32265 5.35418 5.51528 5.94485 6.28830 6.44743 6.91804 6.93068 7.65546 8.57137 8.75476 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049328 B = 0.008476 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.488924 B = 3302.585598 C = 3383.189372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.213 3.787 3 C 0.074 3.926 4 O -0.575 6.575 5 N -0.741 5.741 6 C 0.549 3.451 7 O -0.616 6.616 8 C -0.579 4.579 9 H 0.077 0.923 10 C 0.032 3.968 11 N -0.820 5.820 12 Si 0.992 3.008 13 H -0.264 1.264 14 H -0.272 1.272 15 H -0.252 1.252 16 C -0.160 4.160 17 C -0.175 4.175 18 C -0.157 4.157 19 H 0.061 0.939 20 H 0.040 0.960 21 H 0.078 0.922 22 H 0.062 0.938 23 H 0.026 0.974 24 H 0.384 0.616 25 H 0.387 0.613 26 H 0.272 0.728 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.054 -2.561 -11.316 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.126 3.874 3 C -0.004 4.004 4 O -0.381 6.381 5 N -0.394 5.394 6 C 0.352 3.648 7 O -0.502 6.502 8 C -0.616 4.616 9 H 0.096 0.904 10 C -0.183 4.183 11 N -0.449 5.449 12 Si 0.812 3.188 13 H -0.189 1.189 14 H -0.196 1.196 15 H -0.176 1.176 16 C -0.179 4.179 17 C -0.211 4.211 18 C -0.194 4.194 19 H 0.080 0.920 20 H 0.059 0.941 21 H 0.097 0.903 22 H 0.080 0.920 23 H 0.045 0.955 24 H 0.231 0.769 25 H 0.220 0.780 26 H 0.082 0.918 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.354 -2.364 -11.151 11.479 hybrid contribution 0.500 0.202 0.895 1.045 sum 1.854 -2.162 -10.256 10.644 Atomic orbital electron populations 1.22151 0.94964 1.01966 1.01870 1.19578 0.92770 0.90197 0.84869 1.22560 0.81011 0.97744 0.99125 1.86426 1.19794 1.34174 1.97684 1.45818 1.56639 1.32406 1.04492 1.18330 0.79678 0.83746 0.83005 1.90480 1.43342 1.29546 1.86875 1.21436 1.34708 1.14508 0.90900 0.90435 1.26847 0.93017 0.94699 1.03718 1.70172 1.28912 1.20647 1.25215 0.85108 0.78476 0.79388 0.75845 1.18856 1.19648 1.17584 1.22190 1.00172 1.05061 0.90438 1.23254 0.98154 0.97333 1.02395 1.22975 1.03386 0.97275 0.95809 0.92003 0.94060 0.90347 0.92049 0.95524 0.76905 0.78013 0.91787 0.88120 0.87332 0.88221 0.88664 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.81 6.98 71.98 0.50 -5.31 16 2 C 0.21 8.30 0.70 3.60 0.00 8.30 16 3 C 0.07 2.94 5.54 71.98 0.40 3.34 16 4 O -0.57 -21.66 13.15 -148.98 -1.96 -23.62 16 5 N -0.74 -34.74 4.97 -427.14 -2.12 -36.86 16 6 C 0.55 32.04 7.17 86.36 0.62 32.66 16 7 O -0.62 -39.87 11.22 -4.33 -0.05 -39.92 16 8 C -0.58 -33.79 9.54 24.83 0.24 -33.56 16 9 H 0.08 4.16 7.85 -2.91 -0.02 4.14 16 10 C 0.03 1.82 5.50 85.30 0.47 2.29 16 11 N -0.82 -50.52 11.83 21.84 0.26 -50.27 16 12 Si 0.99 42.14 29.56 68.60 2.03 44.17 16 13 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 14 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 15 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 16 C -0.16 -4.82 4.97 -10.79 -0.05 -4.87 16 17 C -0.17 -4.14 9.52 30.59 0.29 -3.85 16 18 C -0.16 -3.62 9.38 30.59 0.29 -3.34 16 19 H 0.06 2.25 7.14 -2.39 -0.02 2.24 16 20 H 0.04 1.97 6.17 -2.38 -0.01 1.96 16 21 H 0.08 2.41 7.14 -2.39 -0.02 2.40 16 22 H 0.06 1.99 7.09 -2.38 -0.02 1.97 16 23 H 0.03 1.31 6.15 -2.39 -0.01 1.30 16 24 H 0.38 10.90 9.12 -74.06 -0.68 10.23 16 25 H 0.39 16.65 8.40 -92.71 -0.78 15.87 16 26 H 0.27 15.24 8.29 -92.70 -0.77 14.48 16 27 H 0.10 3.11 8.07 -2.38 -0.02 3.09 16 28 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.10 2.40 5.83 -2.39 -0.01 2.39 16 30 H 0.09 2.13 7.07 -2.39 -0.02 2.11 16 31 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -74.79 255.96 0.62 -74.17 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: -0.29 Total: 36.65 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 2.75 Total: -4.32 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -1.86 Total: -87.13 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: -2.01 Total: -63.54 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -74.79 0.62 -74.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379378864.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.729 kcal (2) G-P(sol) polarization free energy of solvation -74.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds