Wall clock time and date at job start Sun Mar 29 2020 22:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 110.06722 * 2 1 4 4 O 1.42907 * 109.46950 * 58.79289 * 3 2 1 5 5 C 1.53994 * 109.91891 * 121.20455 * 2 1 3 6 6 C 1.54591 * 105.13875 * 118.12586 * 5 2 1 7 7 C 1.54944 * 102.92550 * 338.04568 * 6 5 2 8 8 N 1.47903 * 109.91575 * 238.79950 * 2 1 3 9 9 C 1.46898 * 111.00465 * 26.48932 * 8 2 1 10 10 C 1.52997 * 109.47185 * 177.62838 * 9 8 2 11 11 C 1.50696 * 109.47077 * 177.11026 * 10 9 8 12 12 H 1.08008 * 119.99993 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00329 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99665 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00320 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46968 * 269.99950 * 15 13 11 17 17 H 1.48499 * 109.47259 * 149.99693 * 15 13 11 18 18 H 1.48500 * 109.47463 * 29.99493 * 15 13 11 19 19 H 1.08995 * 109.46838 * 176.43345 * 1 2 3 20 20 H 1.08994 * 109.47212 * 296.43484 * 1 2 3 21 21 H 1.09003 * 109.47006 * 56.43742 * 1 2 3 22 22 H 1.08998 * 109.47277 * 178.79078 * 3 2 1 23 23 H 1.09000 * 109.47111 * 298.80080 * 3 2 1 24 24 H 0.96697 * 113.99793 * 180.02562 * 4 3 2 25 25 H 1.09006 * 110.30638 * 359.21771 * 5 2 1 26 26 H 1.08994 * 110.39421 * 237.08738 * 5 2 1 27 27 H 1.08999 * 110.72520 * 219.68662 * 6 5 2 28 28 H 1.09001 * 110.87843 * 96.47435 * 6 5 2 29 29 H 1.08991 * 110.66996 * 278.98210 * 7 6 5 30 30 H 1.08997 * 110.80882 * 155.90836 * 7 6 5 31 31 H 1.09005 * 109.46992 * 57.62355 * 9 8 2 32 32 H 1.08998 * 109.46704 * 297.62890 * 9 8 2 33 33 H 1.08993 * 109.47370 * 57.10803 * 10 9 8 34 34 H 1.08999 * 109.47120 * 297.10476 * 10 9 8 35 35 H 0.96999 * 119.99903 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0550 1.4371 0.0000 4 8 1.5627 2.1241 1.1524 5 6 2.0547 -0.7501 1.2383 6 6 2.8536 -1.9482 0.6762 7 6 2.2661 -2.1193 -0.7473 8 7 2.0339 -0.7204 -1.1894 9 6 1.0592 -0.6702 -2.2874 10 6 1.6389 -1.3732 -3.5164 11 6 0.6124 -1.3841 -4.6196 12 1 -0.3568 -0.9349 -4.4600 13 6 0.9100 -1.9684 -5.8325 14 7 2.0899 -2.5158 -6.0268 15 14 -0.3627 -1.9826 -7.1998 16 1 -1.1907 -3.2107 -7.0926 17 1 0.3245 -1.9621 -8.5160 18 1 -1.2339 -0.7862 -7.0776 19 1 -0.3633 -1.0256 -0.0639 20 1 -0.3633 0.4575 0.9202 21 1 -0.3633 0.5682 -0.8564 22 1 3.1447 1.4259 0.0217 23 1 1.7147 1.9483 -0.9005 24 1 1.8560 3.0432 1.2175 25 1 1.2225 -1.1029 1.8477 26 1 2.7060 -0.1036 1.8264 27 1 2.6804 -2.8424 1.2750 28 1 3.9179 -1.7176 0.6290 29 1 1.3276 -2.6724 -0.7122 30 1 2.9801 -2.6167 -1.4037 31 1 0.8412 0.3693 -2.5324 32 1 0.1411 -1.1716 -1.9813 33 1 1.9046 -2.3980 -3.2573 34 1 2.5286 -0.8413 -3.8533 35 1 2.7509 -2.5082 -5.3169 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379385741.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:59 Heat of formation + Delta-G solvation = -60.767938 kcal Electronic energy + Delta-G solvation = -14955.453938 eV Core-core repulsion = 12566.787255 eV Total energy + Delta-G solvation = -2388.666683 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64133 -36.35184 -33.94246 -31.92238 -31.25345 -28.12754 -26.52925 -24.73588 -23.72861 -21.82129 -20.15875 -18.38805 -17.27346 -16.68555 -15.52184 -15.41568 -14.35959 -13.98979 -13.81434 -13.69414 -13.25076 -12.66147 -12.43799 -12.17221 -11.80998 -11.55841 -11.36591 -10.99304 -10.80241 -10.76965 -10.49571 -10.32962 -10.12035 -9.99048 -9.77988 -9.64886 -8.55146 -8.29411 -7.89625 -6.34135 -4.02701 3.44174 3.48096 3.63832 3.96675 4.55810 4.79411 4.85954 4.98086 5.13034 5.37790 5.43706 5.44371 5.58954 5.73062 5.80184 5.84862 5.93192 6.04145 6.10125 6.18341 6.23713 6.29760 6.38832 6.43356 6.52610 6.83943 7.31399 7.36061 7.60591 7.65522 7.73122 8.26615 8.49160 8.91307 9.69705 11.07062 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.044092 B = 0.007228 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.878106 B = 3872.881709 C = 4184.331691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.091 3.909 3 C 0.098 3.902 4 O -0.575 6.575 5 C -0.113 4.113 6 C -0.127 4.127 7 C 0.043 3.957 8 N -0.511 5.511 9 C 0.061 3.939 10 C 0.015 3.985 11 C -0.603 4.603 12 H 0.047 0.953 13 C 0.015 3.985 14 N -0.913 5.913 15 Si 1.071 2.929 16 H -0.288 1.288 17 H -0.284 1.284 18 H -0.289 1.289 19 H 0.053 0.947 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.376 0.624 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.008 0.992 34 H 0.013 0.987 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 5.251 13.607 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.001 3.999 3 C 0.020 3.980 4 O -0.379 6.379 5 C -0.151 4.151 6 C -0.165 4.165 7 C -0.085 4.085 8 N -0.236 5.236 9 C -0.066 4.066 10 C -0.023 4.023 11 C -0.642 4.642 12 H 0.065 0.935 13 C -0.188 4.188 14 N -0.550 5.550 15 Si 0.900 3.100 16 H -0.215 1.215 17 H -0.210 1.210 18 H -0.215 1.215 19 H 0.072 0.928 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.222 0.778 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.026 0.974 34 H 0.032 0.968 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.168 4.430 11.946 12.742 hybrid contribution -0.282 0.699 1.647 1.812 sum -0.450 5.129 13.594 14.536 Atomic orbital electron populations 1.22300 0.95728 1.01565 1.02295 1.21647 0.93630 0.93217 0.91408 1.21989 0.97182 0.91921 0.86945 1.86408 1.76564 1.28633 1.46320 1.22392 0.99559 0.96659 0.96461 1.22534 1.00112 0.97744 0.96074 1.23124 0.99853 0.90447 0.95091 1.64676 1.43498 1.10369 1.05081 1.22380 0.92566 1.00424 0.91215 1.19213 0.96725 0.94737 0.91583 1.22042 1.00951 1.41520 0.99657 0.93455 1.25822 0.99912 0.93471 0.99629 1.70739 1.05352 1.42275 1.36608 0.83518 0.74651 0.76128 0.75746 1.21504 1.20957 1.21524 0.92840 0.92025 0.92099 0.93139 0.93594 0.77825 0.91748 0.91126 0.91522 0.91088 0.93940 0.89844 0.92158 0.95102 0.97397 0.96835 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 6.78 37.16 0.25 -2.28 16 2 C 0.09 1.44 0.71 -130.53 -0.09 1.35 16 3 C 0.10 1.40 6.07 37.16 0.23 1.63 16 4 O -0.57 -7.17 12.63 -35.23 -0.45 -7.61 16 5 C -0.11 -1.57 5.98 -25.38 -0.15 -1.72 16 6 C -0.13 -1.75 7.06 -24.87 -0.18 -1.92 16 7 C 0.04 0.74 5.61 -1.89 -0.01 0.72 16 8 N -0.51 -9.54 4.92 -214.99 -1.06 -10.60 16 9 C 0.06 1.33 3.58 -3.83 -0.01 1.32 16 10 C 0.01 0.39 4.31 -27.89 -0.12 0.27 16 11 C -0.60 -17.54 9.11 -34.44 -0.31 -17.85 16 12 H 0.05 1.35 7.74 -52.48 -0.41 0.95 16 13 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 14 N -0.91 -28.47 13.65 55.43 0.76 -27.71 16 15 Si 1.07 25.74 29.90 -169.99 -5.08 20.66 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H 0.05 0.86 7.47 -51.93 -0.39 0.47 16 20 H 0.06 0.90 7.80 -51.93 -0.41 0.50 16 21 H 0.06 1.01 6.80 -51.93 -0.35 0.65 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.38 2.91 9.12 45.56 0.42 3.32 16 25 H 0.06 0.86 7.69 -51.93 -0.40 0.46 16 26 H 0.07 0.93 7.54 -51.93 -0.39 0.54 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.75 7.93 -51.93 -0.41 0.34 16 30 H 0.08 1.52 7.61 -51.93 -0.40 1.12 16 31 H 0.06 1.32 7.64 -51.93 -0.40 0.92 16 32 H 0.03 0.68 6.34 -51.93 -0.33 0.35 16 33 H 0.01 0.21 6.80 -51.93 -0.35 -0.14 16 34 H 0.01 0.38 8.01 -51.93 -0.42 -0.04 16 35 H 0.27 8.40 7.22 -40.82 -0.29 8.10 16 LS Contribution 275.38 15.07 4.15 4.15 Total: -1.00 -31.87 275.38 -7.19 -39.06 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.01 Total: 0.18 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -0.50 Total: -18.13 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: -0.30 Total: -38.31 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.45 Total: -7.61 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.87 -7.19 -39.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379385741.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.709 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds