Wall clock time and date at job start Sun Mar 29 2020 22:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 110.06722 * 2 1 4 4 O 1.42907 * 109.46950 * 58.79289 * 3 2 1 5 5 C 1.53994 * 109.91891 * 121.20455 * 2 1 3 6 6 C 1.54591 * 105.13875 * 118.12586 * 5 2 1 7 7 C 1.54944 * 102.92550 * 338.04568 * 6 5 2 8 8 N 1.47903 * 109.91575 * 238.79950 * 2 1 3 9 9 C 1.46898 * 111.00465 * 26.48932 * 8 2 1 10 10 C 1.52997 * 109.47185 * 177.62838 * 9 8 2 11 11 C 1.50696 * 109.47077 * 177.11026 * 10 9 8 12 12 H 1.08008 * 119.99993 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00329 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99665 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00320 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46968 * 269.99950 * 15 13 11 17 17 H 1.48499 * 109.47259 * 149.99693 * 15 13 11 18 18 H 1.48500 * 109.47463 * 29.99493 * 15 13 11 19 19 H 1.08995 * 109.46838 * 176.43345 * 1 2 3 20 20 H 1.08994 * 109.47212 * 296.43484 * 1 2 3 21 21 H 1.09003 * 109.47006 * 56.43742 * 1 2 3 22 22 H 1.08998 * 109.47277 * 178.79078 * 3 2 1 23 23 H 1.09000 * 109.47111 * 298.80080 * 3 2 1 24 24 H 0.96697 * 113.99793 * 180.02562 * 4 3 2 25 25 H 1.09006 * 110.30638 * 359.21771 * 5 2 1 26 26 H 1.08994 * 110.39421 * 237.08738 * 5 2 1 27 27 H 1.08999 * 110.72520 * 219.68662 * 6 5 2 28 28 H 1.09001 * 110.87843 * 96.47435 * 6 5 2 29 29 H 1.08991 * 110.66996 * 278.98210 * 7 6 5 30 30 H 1.08997 * 110.80882 * 155.90836 * 7 6 5 31 31 H 1.09005 * 109.46992 * 57.62355 * 9 8 2 32 32 H 1.08998 * 109.46704 * 297.62890 * 9 8 2 33 33 H 1.08993 * 109.47370 * 57.10803 * 10 9 8 34 34 H 1.08999 * 109.47120 * 297.10476 * 10 9 8 35 35 H 0.96999 * 119.99903 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0550 1.4371 0.0000 4 8 1.5627 2.1241 1.1524 5 6 2.0547 -0.7501 1.2383 6 6 2.8536 -1.9482 0.6762 7 6 2.2661 -2.1193 -0.7473 8 7 2.0339 -0.7204 -1.1894 9 6 1.0592 -0.6702 -2.2874 10 6 1.6389 -1.3732 -3.5164 11 6 0.6124 -1.3841 -4.6196 12 1 -0.3568 -0.9349 -4.4600 13 6 0.9100 -1.9684 -5.8325 14 7 2.0899 -2.5158 -6.0268 15 14 -0.3627 -1.9826 -7.1998 16 1 -1.1907 -3.2107 -7.0926 17 1 0.3245 -1.9621 -8.5160 18 1 -1.2339 -0.7862 -7.0776 19 1 -0.3633 -1.0256 -0.0639 20 1 -0.3633 0.4575 0.9202 21 1 -0.3633 0.5682 -0.8564 22 1 3.1447 1.4259 0.0217 23 1 1.7147 1.9483 -0.9005 24 1 1.8560 3.0432 1.2175 25 1 1.2225 -1.1029 1.8477 26 1 2.7060 -0.1036 1.8264 27 1 2.6804 -2.8424 1.2750 28 1 3.9179 -1.7176 0.6290 29 1 1.3276 -2.6724 -0.7122 30 1 2.9801 -2.6167 -1.4037 31 1 0.8412 0.3693 -2.5324 32 1 0.1411 -1.1716 -1.9813 33 1 1.9046 -2.3980 -3.2573 34 1 2.5286 -0.8413 -3.8533 35 1 2.7509 -2.5082 -5.3169 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379385741.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:59 Heat of formation + Delta-G solvation = -84.621750 kcal Electronic energy + Delta-G solvation = -14956.488317 eV Core-core repulsion = 12566.787255 eV Total energy + Delta-G solvation = -2389.701062 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.97419 -37.45705 -35.96830 -33.63556 -32.54938 -29.96245 -27.75454 -26.21757 -25.56055 -23.51055 -21.64683 -19.77712 -18.90375 -18.24662 -16.85919 -16.76917 -15.72422 -15.67149 -15.43865 -15.22608 -14.83940 -14.27949 -13.78741 -13.58010 -13.45822 -13.25775 -12.75589 -12.58097 -12.40718 -12.09883 -11.97896 -11.87213 -11.70567 -11.55448 -11.42129 -10.87275 -10.73413 -10.55543 -9.40510 -8.71865 -6.42051 1.50642 1.60285 1.78215 2.53254 2.74629 3.14015 3.53944 3.66629 3.79192 3.93495 4.14463 4.26304 4.34323 4.39743 4.45229 4.55330 4.58337 4.60580 4.76497 4.81616 4.95289 4.97456 5.08301 5.10147 5.15117 5.25874 5.31623 5.40630 5.83705 6.05607 6.13157 6.18057 6.55412 6.89213 7.40533 8.69334 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.044092 B = 0.007228 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.878106 B = 3872.881709 C = 4184.331691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.082 3.918 3 C 0.106 3.894 4 O -0.578 6.578 5 C -0.106 4.106 6 C -0.115 4.115 7 C 0.036 3.964 8 N -0.521 5.521 9 C 0.082 3.918 10 C 0.021 3.979 11 C -0.621 4.621 12 H 0.049 0.951 13 C -0.037 4.037 14 N -0.936 5.936 15 Si 1.121 2.879 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.269 1.269 19 H 0.045 0.955 20 H 0.076 0.924 21 H 0.046 0.954 22 H 0.055 0.945 23 H 0.033 0.967 24 H 0.398 0.602 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.034 0.966 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.028 0.972 33 H -0.009 1.009 34 H -0.013 1.013 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.853 5.821 14.832 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.008 4.008 3 C 0.027 3.973 4 O -0.386 6.386 5 C -0.144 4.144 6 C -0.153 4.153 7 C -0.092 4.092 8 N -0.246 5.246 9 C -0.046 4.046 10 C -0.016 4.016 11 C -0.659 4.659 12 H 0.068 0.932 13 C -0.235 4.235 14 N -0.573 5.573 15 Si 0.942 3.058 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.194 1.194 19 H 0.064 0.936 20 H 0.095 0.905 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.247 0.753 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.010 0.990 34 H 0.005 0.995 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.922 5.026 13.214 14.168 hybrid contribution -0.012 0.555 1.328 1.440 sum -0.934 5.582 14.542 15.605 Atomic orbital electron populations 1.22233 0.95687 1.00964 1.02406 1.21828 0.93794 0.94234 0.90899 1.21770 0.97282 0.91040 0.87202 1.86350 1.76675 1.30422 1.45109 1.22376 1.00062 0.96451 0.95518 1.22503 1.00240 0.98913 0.93601 1.23163 0.99287 0.89514 0.97203 1.64593 1.42593 1.11619 1.05818 1.21977 0.92688 0.99243 0.90724 1.19078 0.95371 0.93938 0.93245 1.22463 1.01521 1.41275 1.00688 0.93244 1.27470 1.00954 0.92418 1.02641 1.70880 1.06177 1.44014 1.36262 0.82899 0.72641 0.77611 0.72695 1.19669 1.20613 1.19375 0.93579 0.90541 0.93478 0.92658 0.94850 0.75270 0.90710 0.89786 0.89133 0.90375 0.94758 0.91757 0.92527 0.95423 0.99033 0.99462 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 6.78 71.98 0.49 -4.19 16 2 C 0.08 2.47 0.71 3.67 0.00 2.48 16 3 C 0.11 2.84 6.07 71.98 0.44 3.27 16 4 O -0.58 -12.78 12.63 -148.98 -1.88 -14.66 16 5 C -0.11 -2.65 5.98 31.47 0.19 -2.47 16 6 C -0.11 -2.91 7.06 31.80 0.22 -2.69 16 7 C 0.04 1.24 5.61 86.65 0.49 1.73 16 8 N -0.52 -19.42 4.92 -834.10 -4.11 -23.53 16 9 C 0.08 3.61 3.58 86.30 0.31 3.92 16 10 C 0.02 1.15 4.31 29.85 0.13 1.28 16 11 C -0.62 -36.70 9.11 25.60 0.23 -36.46 16 12 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 13 C -0.04 -2.22 5.46 84.65 0.46 -1.76 16 14 N -0.94 -59.52 13.65 21.45 0.29 -59.23 16 15 Si 1.12 51.24 29.90 68.60 2.05 53.29 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 H 0.05 1.44 7.47 -2.39 -0.02 1.42 16 20 H 0.08 2.07 7.80 -2.39 -0.02 2.05 16 21 H 0.05 1.53 6.80 -2.39 -0.02 1.51 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.40 4.97 9.12 -74.06 -0.68 4.30 16 25 H 0.07 1.74 7.69 -2.38 -0.02 1.72 16 26 H 0.08 1.92 7.54 -2.39 -0.02 1.90 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.03 1.22 7.93 -2.39 -0.02 1.20 16 30 H 0.06 2.42 7.61 -2.39 -0.02 2.40 16 31 H 0.06 2.52 7.64 -2.38 -0.02 2.50 16 32 H 0.03 1.23 6.34 -2.39 -0.02 1.22 16 33 H -0.01 -0.49 6.80 -2.39 -0.02 -0.51 16 34 H -0.01 -0.77 8.01 -2.39 -0.02 -0.79 16 35 H 0.26 16.52 7.22 -92.71 -0.67 15.85 16 Total: -1.00 -68.56 275.38 -0.20 -68.77 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.48 Total: 10.24 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 2.96 Total: -34.89 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -3.81 Total: -82.75 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.88 Total: -14.66 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -68.56 -0.20 -68.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379385741.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.857 kcal (2) G-P(sol) polarization free energy of solvation -68.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds