Wall clock time and date at job start Sun Mar 29 2020 22:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 110.00949 * 2 1 4 4 O 1.42903 * 109.47304 * 296.28179 * 3 2 1 5 5 C 1.54324 * 109.88680 * 238.89057 * 2 1 3 6 6 C 1.55142 * 103.01687 * 262.87725 * 5 2 1 7 7 C 1.54907 * 101.65358 * 324.34257 * 6 5 2 8 8 N 1.47438 * 109.89417 * 121.11699 * 2 1 3 9 9 C 1.46891 * 111.00277 * 242.66285 * 8 2 1 10 10 C 1.53001 * 109.47384 * 174.32217 * 9 8 2 11 11 C 1.50700 * 109.47476 * 182.55820 * 10 9 8 12 12 H 1.08003 * 119.99944 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99996 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99955 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99813 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46967 * 270.00566 * 15 13 11 17 17 H 1.48503 * 109.47012 * 30.00150 * 15 13 11 18 18 H 1.48490 * 109.47266 * 150.00398 * 15 13 11 19 19 H 1.09004 * 109.46953 * 298.88357 * 1 2 3 20 20 H 1.09003 * 109.47569 * 58.88022 * 1 2 3 21 21 H 1.08999 * 109.47225 * 178.88568 * 1 2 3 22 22 H 1.08994 * 109.47207 * 56.28906 * 3 2 1 23 23 H 1.09003 * 109.47118 * 176.28496 * 3 2 1 24 24 H 0.96695 * 114.00206 * 179.97438 * 4 3 2 25 25 H 1.08991 * 110.70748 * 144.49339 * 5 2 1 26 26 H 1.09006 * 110.70633 * 21.25568 * 5 2 1 27 27 H 1.08997 * 110.99118 * 206.25630 * 6 5 2 28 28 H 1.08995 * 110.99315 * 82.43443 * 6 5 2 29 29 H 1.08994 * 110.37839 * 278.24462 * 7 6 5 30 30 H 1.09000 * 110.46965 * 155.94728 * 7 6 5 31 31 H 1.09001 * 109.47546 * 54.32174 * 9 8 2 32 32 H 1.08997 * 109.47337 * 294.31806 * 9 8 2 33 33 H 1.09002 * 109.47158 * 62.55763 * 10 9 8 34 34 H 1.09005 * 109.46869 * 302.56112 * 10 9 8 35 35 H 0.97003 * 119.99517 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0535 1.4376 0.0000 4 8 1.6559 2.0894 -1.2080 5 6 2.0549 -0.7498 -1.2425 6 6 2.3500 -2.1708 -0.6943 7 6 2.8586 -1.8556 0.7345 8 7 2.0317 -0.7165 1.1869 9 6 2.8030 0.1813 2.0568 10 6 3.1854 -0.5571 3.3411 11 6 3.9224 0.3825 4.2604 12 1 4.0998 1.4043 3.9590 13 6 4.3691 -0.0621 5.4867 14 7 4.1526 -1.3062 5.8539 15 14 5.2820 1.1029 6.6265 16 1 6.7385 1.0286 6.3471 17 1 4.8048 2.4910 6.4012 18 1 5.0282 0.7151 8.0373 19 1 -0.3633 0.4964 0.8999 20 1 -0.3634 0.5311 -0.8798 21 1 -0.3633 -1.0275 -0.0200 22 1 1.6419 1.9742 0.8548 23 1 3.1414 1.4281 0.0666 24 1 1.9537 3.0068 -1.2763 25 1 2.9664 -0.2842 -1.6170 26 1 1.2924 -0.7876 -2.0206 27 1 3.1229 -2.6640 -1.2838 28 1 1.4421 -2.7730 -0.6616 29 1 3.9112 -1.5738 0.7092 30 1 2.7121 -2.7145 1.3894 31 1 2.1989 1.0538 2.3056 32 1 3.7071 0.5011 1.5387 33 1 3.8271 -1.4035 3.0962 34 1 2.2831 -0.9165 3.8360 35 1 4.4666 -1.6188 6.7168 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379385742.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:02 Heat of formation + Delta-G solvation = -54.341854 kcal Electronic energy + Delta-G solvation = -14961.319208 eV Core-core repulsion = 12572.931180 eV Total energy + Delta-G solvation = -2388.388027 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.63192 -36.16133 -33.72281 -31.88662 -31.27514 -28.37749 -26.56453 -24.54904 -24.09681 -21.60728 -20.06014 -18.31548 -17.22985 -16.29475 -15.44439 -15.25601 -14.45592 -14.43230 -13.89201 -13.37669 -13.02917 -12.56705 -12.27505 -11.97224 -11.93431 -11.49139 -11.28144 -11.03552 -10.82468 -10.67645 -10.51841 -10.39469 -10.19326 -10.08136 -9.60980 -9.33217 -9.11672 -8.34687 -7.71110 -5.99919 -4.02579 3.30957 3.37346 3.40235 4.16016 4.43887 4.64730 4.87736 5.04972 5.19514 5.35937 5.42595 5.49289 5.61642 5.75006 5.88509 5.95457 6.05095 6.11222 6.20226 6.24658 6.33692 6.38760 6.47233 6.50421 6.67247 6.96147 7.50864 7.54243 7.68753 7.80401 7.89089 8.08420 8.42692 9.04598 9.61009 11.11430 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040646 B = 0.007536 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.712900 B = 3714.478403 C = 4102.987311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.097 3.903 3 C 0.065 3.935 4 O -0.573 6.573 5 C -0.121 4.121 6 C -0.133 4.133 7 C 0.047 3.953 8 N -0.515 5.515 9 C 0.051 3.949 10 C 0.028 3.972 11 C -0.522 4.522 12 H 0.053 0.947 13 C 0.058 3.942 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.274 1.274 18 H -0.286 1.286 19 H 0.054 0.946 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.374 0.626 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.022 0.978 33 H 0.016 0.984 34 H 0.025 0.975 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 2.566 -12.829 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.007 3.993 3 C -0.014 4.014 4 O -0.377 6.377 5 C -0.159 4.159 6 C -0.171 4.171 7 C -0.080 4.080 8 N -0.240 5.240 9 C -0.076 4.076 10 C -0.009 4.009 11 C -0.561 4.561 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.199 1.199 18 H -0.212 1.212 19 H 0.073 0.927 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.220 0.780 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.565 1.684 -12.492 13.406 hybrid contribution 1.589 1.476 0.513 2.228 sum -2.976 3.160 -11.979 12.741 Atomic orbital electron populations 1.21661 0.93429 1.01513 1.01141 1.21699 0.96435 0.90728 0.90398 1.22898 0.98229 0.94012 0.86251 1.86423 1.80414 1.29715 1.41177 1.22707 1.00886 0.95142 0.97166 1.22758 1.01152 0.96814 0.96366 1.23008 0.95571 0.94938 0.94524 1.63840 1.37310 1.08913 1.13967 1.22580 0.93975 0.95721 0.95278 1.19080 0.96690 0.95359 0.89788 1.21181 1.36147 0.97289 1.01500 0.92898 1.24993 0.96210 0.95117 0.97980 1.69974 1.46505 1.15287 1.21364 0.86606 0.80062 0.81215 0.80174 1.20726 1.19920 1.21160 0.92710 0.92566 0.92614 0.92746 0.93339 0.77981 0.91823 0.91107 0.91374 0.91007 0.93627 0.90068 0.91824 0.95997 0.96592 0.95665 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.60 37.16 0.32 -1.46 16 2 C 0.10 1.55 0.97 -130.61 -0.13 1.42 16 3 C 0.06 0.97 4.56 37.16 0.17 1.14 16 4 O -0.57 -7.52 12.74 -35.23 -0.45 -7.97 16 5 C -0.12 -1.71 5.62 -24.90 -0.14 -1.85 16 6 C -0.13 -1.85 7.08 -24.59 -0.17 -2.02 16 7 C 0.05 0.82 5.61 -2.29 -0.01 0.81 16 8 N -0.51 -9.66 4.82 -215.76 -1.04 -10.71 16 9 C 0.05 1.09 3.61 -3.83 -0.01 1.08 16 10 C 0.03 0.74 4.91 -27.88 -0.14 0.60 16 11 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 12 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 15 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 20 H 0.06 0.78 7.79 -51.93 -0.40 0.37 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.05 0.85 6.73 -51.93 -0.35 0.50 16 23 H 0.05 0.76 6.58 -51.93 -0.34 0.42 16 24 H 0.37 3.25 9.12 45.56 0.42 3.66 16 25 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 26 H 0.07 0.94 7.83 -51.93 -0.41 0.53 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.83 7.70 -51.93 -0.40 0.43 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.06 1.34 6.46 -51.93 -0.34 1.01 16 32 H 0.02 0.46 6.58 -51.93 -0.34 0.12 16 33 H 0.02 0.44 7.43 -51.93 -0.39 0.05 16 34 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 276.20 15.07 4.16 4.16 Total: -1.00 -30.91 276.20 -7.17 -38.08 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.03 Total: -0.14 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -0.53 Total: -13.86 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.30 Total: -36.95 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.45 Total: -7.97 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.91 -7.17 -38.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379385742.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.261 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds