Wall clock time and date at job start Sun Mar 29 2020 22:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 110.00949 * 2 1 4 4 O 1.42903 * 109.47304 * 296.28179 * 3 2 1 5 5 C 1.54324 * 109.88680 * 238.89057 * 2 1 3 6 6 C 1.55142 * 103.01687 * 262.87725 * 5 2 1 7 7 C 1.54907 * 101.65358 * 324.34257 * 6 5 2 8 8 N 1.47438 * 109.89417 * 121.11699 * 2 1 3 9 9 C 1.46891 * 111.00277 * 242.66285 * 8 2 1 10 10 C 1.53001 * 109.47384 * 174.32217 * 9 8 2 11 11 C 1.50700 * 109.47476 * 182.55820 * 10 9 8 12 12 H 1.08003 * 119.99944 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99996 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99955 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99813 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46967 * 270.00566 * 15 13 11 17 17 H 1.48503 * 109.47012 * 30.00150 * 15 13 11 18 18 H 1.48490 * 109.47266 * 150.00398 * 15 13 11 19 19 H 1.09004 * 109.46953 * 298.88357 * 1 2 3 20 20 H 1.09003 * 109.47569 * 58.88022 * 1 2 3 21 21 H 1.08999 * 109.47225 * 178.88568 * 1 2 3 22 22 H 1.08994 * 109.47207 * 56.28906 * 3 2 1 23 23 H 1.09003 * 109.47118 * 176.28496 * 3 2 1 24 24 H 0.96695 * 114.00206 * 179.97438 * 4 3 2 25 25 H 1.08991 * 110.70748 * 144.49339 * 5 2 1 26 26 H 1.09006 * 110.70633 * 21.25568 * 5 2 1 27 27 H 1.08997 * 110.99118 * 206.25630 * 6 5 2 28 28 H 1.08995 * 110.99315 * 82.43443 * 6 5 2 29 29 H 1.08994 * 110.37839 * 278.24462 * 7 6 5 30 30 H 1.09000 * 110.46965 * 155.94728 * 7 6 5 31 31 H 1.09001 * 109.47546 * 54.32174 * 9 8 2 32 32 H 1.08997 * 109.47337 * 294.31806 * 9 8 2 33 33 H 1.09002 * 109.47158 * 62.55763 * 10 9 8 34 34 H 1.09005 * 109.46869 * 302.56112 * 10 9 8 35 35 H 0.97003 * 119.99517 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0535 1.4376 0.0000 4 8 1.6559 2.0894 -1.2080 5 6 2.0549 -0.7498 -1.2425 6 6 2.3500 -2.1708 -0.6943 7 6 2.8586 -1.8556 0.7345 8 7 2.0317 -0.7165 1.1869 9 6 2.8030 0.1813 2.0568 10 6 3.1854 -0.5571 3.3411 11 6 3.9224 0.3825 4.2604 12 1 4.0998 1.4043 3.9590 13 6 4.3691 -0.0621 5.4867 14 7 4.1526 -1.3062 5.8539 15 14 5.2820 1.1029 6.6265 16 1 6.7385 1.0286 6.3471 17 1 4.8048 2.4910 6.4012 18 1 5.0282 0.7151 8.0373 19 1 -0.3633 0.4964 0.8999 20 1 -0.3634 0.5311 -0.8798 21 1 -0.3633 -1.0275 -0.0200 22 1 1.6419 1.9742 0.8548 23 1 3.1414 1.4281 0.0666 24 1 1.9537 3.0068 -1.2763 25 1 2.9664 -0.2842 -1.6170 26 1 1.2924 -0.7876 -2.0206 27 1 3.1229 -2.6640 -1.2838 28 1 1.4421 -2.7730 -0.6616 29 1 3.9112 -1.5738 0.7092 30 1 2.7121 -2.7145 1.3894 31 1 2.1989 1.0538 2.3056 32 1 3.7071 0.5011 1.5387 33 1 3.8271 -1.4035 3.0962 34 1 2.2831 -0.9165 3.8360 35 1 4.4666 -1.6188 6.7168 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379385742.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:01 Heat of formation + Delta-G solvation = -77.297372 kcal Electronic energy + Delta-G solvation = -14962.314634 eV Core-core repulsion = 12572.931180 eV Total energy + Delta-G solvation = -2389.383453 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.95928 -37.29534 -35.67357 -33.70143 -32.50189 -30.22566 -27.79912 -26.15275 -25.69832 -23.19458 -21.60419 -19.69149 -18.56611 -18.20594 -16.82042 -16.63552 -16.39377 -15.77117 -15.34872 -14.64178 -14.56234 -14.17796 -13.98197 -13.37301 -13.19893 -12.92154 -12.89214 -12.83083 -12.48253 -12.34279 -11.94782 -11.81904 -11.54741 -11.43427 -11.32845 -11.18840 -10.85606 -10.55289 -9.20263 -8.21017 -6.32785 1.39062 1.40777 1.51792 2.39009 2.92207 3.12305 3.39338 3.67760 3.81139 4.03080 4.20512 4.27120 4.36796 4.43351 4.54474 4.57171 4.66710 4.88424 4.92706 4.95309 5.03026 5.08664 5.09866 5.19314 5.29369 5.44558 5.48188 5.63714 5.78505 6.07916 6.25250 6.31568 6.84085 6.85067 7.36434 8.91187 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040646 B = 0.007536 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.712900 B = 3714.478403 C = 4102.987311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.087 3.913 3 C 0.073 3.927 4 O -0.574 6.574 5 C -0.114 4.114 6 C -0.120 4.120 7 C 0.042 3.958 8 N -0.530 5.530 9 C 0.072 3.928 10 C 0.037 3.963 11 C -0.545 4.545 12 H 0.060 0.940 13 C 0.001 3.999 14 N -0.931 5.931 15 Si 0.967 3.033 16 H -0.272 1.272 17 H -0.262 1.262 18 H -0.282 1.282 19 H 0.042 0.958 20 H 0.071 0.929 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.395 0.605 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.025 0.975 33 H -0.009 1.009 34 H -0.010 1.010 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.800 3.730 -14.032 15.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.002 4.002 3 C -0.006 4.006 4 O -0.381 6.381 5 C -0.152 4.152 6 C -0.158 4.158 7 C -0.086 4.086 8 N -0.255 5.255 9 C -0.056 4.056 10 C 0.000 4.000 11 C -0.583 4.583 12 H 0.079 0.921 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.791 3.209 16 H -0.197 1.197 17 H -0.186 1.186 18 H -0.207 1.207 19 H 0.061 0.939 20 H 0.090 0.910 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.244 0.756 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.010 0.990 34 H 0.009 0.991 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.471 2.870 -13.722 14.714 hybrid contribution 1.522 1.096 0.854 2.061 sum -2.948 3.966 -12.868 13.784 Atomic orbital electron populations 1.21619 0.92557 1.01781 1.01230 1.21865 0.97054 0.91359 0.89902 1.22637 0.97513 0.93640 0.86816 1.86369 1.80440 1.31440 1.39861 1.22675 1.01333 0.94629 0.96555 1.22721 1.02095 0.97168 0.93807 1.23022 0.94944 0.93930 0.96711 1.63725 1.36977 1.09167 1.15657 1.22185 0.94432 0.95331 0.93625 1.18902 0.94433 0.94813 0.91879 1.21613 1.36454 0.97933 1.02302 0.92128 1.25980 0.97035 0.96880 0.99829 1.70116 1.47583 1.17385 1.22037 0.85428 0.78773 0.79135 0.77594 1.19719 1.18631 1.20708 0.93919 0.91049 0.92336 0.93610 0.94142 0.75571 0.91749 0.89348 0.89144 0.90062 0.94848 0.91820 0.91700 0.95734 0.99039 0.99116 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.20 8.60 71.98 0.62 -2.58 16 2 C 0.09 2.66 0.97 3.87 0.00 2.67 16 3 C 0.07 2.08 4.56 71.98 0.33 2.41 16 4 O -0.57 -13.53 12.74 -148.98 -1.90 -15.43 16 5 C -0.11 -2.94 5.62 31.78 0.18 -2.76 16 6 C -0.12 -3.10 7.08 31.98 0.23 -2.87 16 7 C 0.04 1.46 5.61 86.77 0.49 1.94 16 8 N -0.53 -19.95 4.82 -836.52 -4.03 -23.98 16 9 C 0.07 3.10 3.61 86.31 0.31 3.42 16 10 C 0.04 2.03 4.91 29.85 0.15 2.18 16 11 C -0.54 -31.44 9.11 25.60 0.23 -31.20 16 12 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 13 C 0.00 0.04 5.46 84.66 0.46 0.51 16 14 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 15 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 20 H 0.07 1.78 7.79 -2.39 -0.02 1.77 16 21 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.05 1.38 6.73 -2.39 -0.02 1.36 16 23 H 0.04 1.22 6.58 -2.39 -0.02 1.20 16 24 H 0.39 5.75 9.12 -74.06 -0.68 5.08 16 25 H 0.06 1.67 7.85 -2.39 -0.02 1.65 16 26 H 0.09 2.01 7.83 -2.38 -0.02 1.99 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 29 H 0.03 1.23 7.70 -2.39 -0.02 1.21 16 30 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.06 2.76 6.46 -2.39 -0.02 2.75 16 32 H 0.02 1.04 6.58 -2.39 -0.02 1.03 16 33 H -0.01 -0.51 7.43 -2.39 -0.02 -0.53 16 34 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -66.51 276.20 -0.24 -66.75 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.38 Total: 9.71 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 3.00 Total: -26.29 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -3.75 Total: -81.23 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.90 Total: -15.43 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -66.51 -0.24 -66.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379385742.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.548 kcal (2) G-P(sol) polarization free energy of solvation -66.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds