Wall clock time and date at job start Sun Mar 29 2020 22:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47508 * 2 1 4 4 C 1.37191 * 120.00222 * 265.81395 * 3 2 1 5 5 H 1.08001 * 120.00068 * 146.04958 * 4 3 2 6 6 C 1.38885 * 119.99819 * 326.04935 * 4 3 2 7 7 N 1.31462 * 120.00245 * 337.99673 * 6 4 3 8 8 Si 1.86800 * 119.99821 * 157.99736 * 6 4 3 9 9 H 1.48506 * 109.47026 * 60.00055 * 8 6 4 10 10 H 1.48496 * 109.47341 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47404 * 299.99980 * 8 6 4 12 12 C 1.34780 * 119.99665 * 85.81089 * 3 2 1 13 13 O 1.21504 * 119.99680 * 180.02562 * 12 3 2 14 14 O 1.34665 * 120.00011 * 0.02562 * 12 3 2 15 15 C 1.45201 * 117.00054 * 179.97438 * 14 12 3 16 16 C 1.52998 * 109.47206 * 180.02562 * 15 14 12 17 17 C 1.53005 * 117.49582 * 243.62447 * 16 15 14 18 18 C 1.53000 * 117.49813 * 175.00237 * 16 15 14 19 19 H 1.09011 * 109.46777 * 299.99728 * 1 2 3 20 20 H 1.08994 * 109.47487 * 59.99214 * 1 2 3 21 21 H 1.08999 * 109.47637 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47085 * 240.00096 * 2 1 3 23 23 H 1.09002 * 109.47510 * 120.00439 * 2 1 3 24 24 H 0.97002 * 119.99973 * 179.97438 * 7 6 4 25 25 H 1.09006 * 109.46782 * 59.99876 * 15 14 12 26 26 H 1.09000 * 109.47103 * 300.00618 * 15 14 12 27 27 H 1.08997 * 115.55095 * 29.33078 * 16 15 14 28 28 H 1.09001 * 117.49902 * 359.97438 * 17 16 15 29 29 H 1.08996 * 117.49758 * 145.02168 * 17 16 15 30 30 H 1.08999 * 117.49875 * 214.98121 * 18 16 15 31 31 H 1.09003 * 117.49802 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3289 1.9990 -1.1849 5 1 2.1572 3.0588 -1.3025 6 6 2.8639 1.2616 -2.2332 7 7 3.4693 0.1199 -1.9920 8 14 2.7232 1.8922 -3.9859 9 1 3.3983 3.2106 -4.0934 10 1 3.3690 0.9279 -4.9123 11 1 1.2899 2.0393 -4.3456 12 6 2.1626 2.0449 1.1642 13 8 2.5673 3.1906 1.1641 14 8 1.8583 1.4383 2.3273 15 6 2.0386 2.2133 3.5419 16 6 1.6454 1.3637 4.7520 17 6 0.4545 1.8350 5.5891 18 6 1.8759 1.9629 6.1408 19 1 -0.3633 0.5139 0.8901 20 1 -0.3634 0.5139 -0.8898 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 3.8426 -0.3952 -2.7242 25 1 1.4096 3.1027 3.5020 26 1 3.0834 2.5109 3.6313 27 1 1.7868 0.2890 4.6378 28 1 -0.0485 2.7506 5.2779 29 1 -0.1878 1.0703 6.0257 30 1 2.1687 1.2824 6.9403 31 1 2.3081 2.9623 6.1923 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379386964.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:00 Heat of formation + Delta-G solvation = -54.104240 kcal Electronic energy + Delta-G solvation = -14450.093762 eV Core-core repulsion = 11925.882944 eV Total energy + Delta-G solvation = -2524.210818 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.24098 -37.38593 -35.74793 -34.48292 -31.88762 -29.45573 -27.39164 -24.83662 -22.38822 -22.23429 -20.51532 -20.11280 -17.14292 -16.57760 -16.10942 -15.44588 -15.10191 -14.40155 -14.05126 -13.55970 -13.07388 -12.68591 -12.30427 -11.79938 -11.70096 -11.52570 -11.11592 -11.02450 -10.84140 -10.47386 -10.40459 -10.34290 -10.23482 -10.00005 -9.48792 -9.05369 -8.93885 -7.52875 -6.32180 -3.96380 3.21577 3.21917 3.26920 3.44718 3.87075 4.16047 4.28673 4.82654 4.94618 5.00406 5.07063 5.46779 5.58935 5.60879 5.84071 5.87591 5.97211 6.10257 6.13723 6.27756 6.37532 6.43894 6.71936 6.99179 7.32846 7.39482 7.62715 8.28616 8.48699 9.16426 9.39360 10.09064 10.72531 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.055070 B = 0.007455 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.321825 B = 3755.027138 C = 3970.745327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 N -0.424 5.424 4 C -0.298 4.298 5 H 0.094 0.906 6 C 0.033 3.967 7 N -0.870 5.870 8 Si 0.927 3.073 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.593 3.407 13 O -0.610 6.610 14 O -0.379 6.379 15 C 0.120 3.880 16 C -0.151 4.151 17 C -0.179 4.179 18 C -0.174 4.174 19 H 0.043 0.957 20 H 0.054 0.946 21 H 0.049 0.951 22 H 0.113 0.887 23 H 0.051 0.949 24 H 0.269 0.731 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.832 -1.478 8.828 10.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.019 4.019 3 N -0.151 5.151 4 C -0.425 4.425 5 H 0.112 0.888 6 C -0.171 4.171 7 N -0.508 5.508 8 Si 0.753 3.247 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.349 3.651 13 O -0.503 6.503 14 O -0.294 6.294 15 C 0.044 3.956 16 C -0.169 4.169 17 C -0.216 4.216 18 C -0.211 4.211 19 H 0.062 0.938 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.130 0.870 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.133 0.867 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.614 -1.298 8.771 9.995 hybrid contribution 0.041 0.259 -0.726 0.772 sum -4.573 -1.040 8.045 9.312 Atomic orbital electron populations 1.22135 0.98233 1.00154 1.01326 1.21553 0.91845 0.84367 1.04111 1.42511 1.58706 1.12666 1.01237 1.19408 1.41188 0.95668 0.86224 0.88849 1.25388 0.94318 0.96703 1.00683 1.69952 1.32857 1.15201 1.32776 0.85994 0.78698 0.78685 0.81293 1.19696 1.20902 1.19801 1.18748 0.80426 0.85195 0.80778 1.90781 1.54619 1.18388 1.86514 1.86199 1.83238 1.45625 1.14338 1.22091 1.00936 0.92294 0.80304 1.22174 1.03252 1.00824 0.90629 1.23075 0.91137 1.03307 1.04051 1.22961 0.99621 1.02553 0.95925 0.93805 0.92727 0.93219 0.86962 0.93040 0.92098 0.92132 0.91693 0.86736 0.88660 0.88712 0.88484 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.21 37.15 0.38 -2.81 16 2 C 0.11 2.49 5.65 -4.04 -0.02 2.46 16 3 N -0.42 -11.54 2.56 -120.22 -0.31 -11.84 16 4 C -0.30 -8.50 8.98 -14.91 -0.13 -8.63 16 5 H 0.09 2.75 7.70 -52.49 -0.40 2.34 16 6 C 0.03 0.89 4.94 -17.47 -0.09 0.80 16 7 N -0.87 -23.82 11.31 55.49 0.63 -23.19 16 8 Si 0.93 20.71 29.61 -169.99 -5.03 15.68 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 C 0.59 16.00 8.33 54.06 0.45 16.45 16 13 O -0.61 -17.95 15.96 -19.27 -0.31 -18.26 16 14 O -0.38 -8.62 9.12 -40.39 -0.37 -8.98 16 15 C 0.12 2.20 5.75 37.16 0.21 2.41 16 16 C -0.15 -2.13 6.07 -90.62 -0.55 -2.68 16 17 C -0.18 -2.09 10.18 -26.73 -0.27 -2.36 16 18 C -0.17 -1.93 10.25 -26.73 -0.27 -2.20 16 19 H 0.04 0.86 8.14 -51.92 -0.42 0.43 16 20 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.11 2.84 5.32 -51.93 -0.28 2.56 16 23 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 24 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.06 1.10 7.87 -51.93 -0.41 0.70 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 28 H 0.09 1.10 8.03 -51.93 -0.42 0.69 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 270.10 15.07 4.07 4.07 Total: -1.00 -31.32 270.10 -6.03 -37.35 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.41 Total: 1.75 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.30 Total: 3.44 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.32 Total: -35.04 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.68 Total: -27.24 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.32 -6.03 -37.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379386964.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.759 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds