Wall clock time and date at job start Sun Mar 29 2020 22:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47508 * 2 1 4 4 C 1.37191 * 120.00222 * 265.81395 * 3 2 1 5 5 H 1.08001 * 120.00068 * 146.04958 * 4 3 2 6 6 C 1.38885 * 119.99819 * 326.04935 * 4 3 2 7 7 N 1.31462 * 120.00245 * 337.99673 * 6 4 3 8 8 Si 1.86800 * 119.99821 * 157.99736 * 6 4 3 9 9 H 1.48506 * 109.47026 * 60.00055 * 8 6 4 10 10 H 1.48496 * 109.47341 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47404 * 299.99980 * 8 6 4 12 12 C 1.34780 * 119.99665 * 85.81089 * 3 2 1 13 13 O 1.21504 * 119.99680 * 180.02562 * 12 3 2 14 14 O 1.34665 * 120.00011 * 0.02562 * 12 3 2 15 15 C 1.45201 * 117.00054 * 179.97438 * 14 12 3 16 16 C 1.52998 * 109.47206 * 180.02562 * 15 14 12 17 17 C 1.53005 * 117.49582 * 243.62447 * 16 15 14 18 18 C 1.53000 * 117.49813 * 175.00237 * 16 15 14 19 19 H 1.09011 * 109.46777 * 299.99728 * 1 2 3 20 20 H 1.08994 * 109.47487 * 59.99214 * 1 2 3 21 21 H 1.08999 * 109.47637 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47085 * 240.00096 * 2 1 3 23 23 H 1.09002 * 109.47510 * 120.00439 * 2 1 3 24 24 H 0.97002 * 119.99973 * 179.97438 * 7 6 4 25 25 H 1.09006 * 109.46782 * 59.99876 * 15 14 12 26 26 H 1.09000 * 109.47103 * 300.00618 * 15 14 12 27 27 H 1.08997 * 115.55095 * 29.33078 * 16 15 14 28 28 H 1.09001 * 117.49902 * 359.97438 * 17 16 15 29 29 H 1.08996 * 117.49758 * 145.02168 * 17 16 15 30 30 H 1.08999 * 117.49875 * 214.98121 * 18 16 15 31 31 H 1.09003 * 117.49802 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3289 1.9990 -1.1849 5 1 2.1572 3.0588 -1.3025 6 6 2.8639 1.2616 -2.2332 7 7 3.4693 0.1199 -1.9920 8 14 2.7232 1.8922 -3.9859 9 1 3.3983 3.2106 -4.0934 10 1 3.3690 0.9279 -4.9123 11 1 1.2899 2.0393 -4.3456 12 6 2.1626 2.0449 1.1642 13 8 2.5673 3.1906 1.1641 14 8 1.8583 1.4383 2.3273 15 6 2.0386 2.2133 3.5419 16 6 1.6454 1.3637 4.7520 17 6 0.4545 1.8350 5.5891 18 6 1.8759 1.9629 6.1408 19 1 -0.3633 0.5139 0.8901 20 1 -0.3634 0.5139 -0.8898 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 3.8426 -0.3952 -2.7242 25 1 1.4096 3.1027 3.5020 26 1 3.0834 2.5109 3.6313 27 1 1.7868 0.2890 4.6378 28 1 -0.0485 2.7506 5.2779 29 1 -0.1878 1.0703 6.0257 30 1 2.1687 1.2824 6.9403 31 1 2.3081 2.9623 6.1923 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379386964.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:00 Heat of formation + Delta-G solvation = -72.938246 kcal Electronic energy + Delta-G solvation = -14450.910465 eV Core-core repulsion = 11925.882944 eV Total energy + Delta-G solvation = -2525.027522 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.18082 -38.72675 -37.46616 -36.48416 -33.94588 -31.30975 -28.92768 -26.82840 -24.09045 -23.27884 -22.10835 -21.66518 -19.14633 -18.54513 -17.83430 -17.30574 -16.81347 -16.03190 -15.37972 -15.21900 -14.76104 -14.47228 -13.95924 -13.62996 -13.57616 -12.84264 -12.72130 -12.45628 -12.40078 -12.22828 -12.08508 -11.88802 -11.83635 -11.47584 -11.13846 -10.96026 -10.84467 -9.60284 -8.38374 -6.12587 1.40118 1.44042 1.52308 1.72908 2.09124 2.40733 2.84743 2.99082 3.46069 3.85822 3.91175 4.08106 4.21944 4.38269 4.47889 4.56355 4.63042 4.76228 4.79652 4.98692 5.00919 5.14508 5.24075 5.25563 5.39672 5.50987 5.63798 6.17304 6.41201 7.06394 7.31852 8.01877 8.65911 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.055070 B = 0.007455 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.321825 B = 3755.027138 C = 3970.745327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.104 3.896 3 N -0.434 5.434 4 C -0.338 4.338 5 H 0.072 0.928 6 C 0.002 3.998 7 N -0.889 5.889 8 Si 0.997 3.003 9 H -0.274 1.274 10 H -0.269 1.269 11 H -0.261 1.261 12 C 0.583 3.417 13 O -0.647 6.647 14 O -0.375 6.375 15 C 0.114 3.886 16 C -0.175 4.175 17 C -0.169 4.169 18 C -0.152 4.152 19 H 0.043 0.957 20 H 0.046 0.954 21 H 0.086 0.914 22 H 0.098 0.902 23 H 0.054 0.946 24 H 0.278 0.722 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.655 -2.332 9.126 10.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 N -0.161 5.161 4 C -0.465 4.465 5 H 0.090 0.910 6 C -0.201 4.201 7 N -0.527 5.527 8 Si 0.819 3.181 9 H -0.199 1.199 10 H -0.193 1.193 11 H -0.186 1.186 12 C 0.339 3.661 13 O -0.544 6.544 14 O -0.290 6.290 15 C 0.039 3.961 16 C -0.194 4.194 17 C -0.205 4.205 18 C -0.189 4.189 19 H 0.062 0.938 20 H 0.065 0.935 21 H 0.105 0.895 22 H 0.116 0.884 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.133 0.867 28 H 0.112 0.888 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.452 -2.191 9.099 10.832 hybrid contribution 0.340 0.498 -0.741 0.955 sum -5.113 -1.694 8.358 9.943 Atomic orbital electron populations 1.22009 0.95198 1.02411 1.00911 1.21653 0.94317 0.82534 1.03402 1.42806 1.58497 1.13683 1.01107 1.19453 1.43797 0.95407 0.87815 0.91009 1.26268 0.92870 0.96632 1.04297 1.70021 1.32315 1.15904 1.34433 0.84964 0.79260 0.78067 0.75818 1.19949 1.19307 1.18559 1.18946 0.80365 0.84923 0.81877 1.90725 1.56369 1.20004 1.87312 1.86195 1.82672 1.45805 1.14309 1.22427 1.00485 0.93139 0.80062 1.22076 1.06859 1.00219 0.90210 1.23201 0.91330 1.03589 1.02425 1.23120 0.98870 1.02951 0.93919 0.93777 0.93513 0.89548 0.88444 0.92734 0.91273 0.92520 0.92793 0.86712 0.88788 0.86627 0.86002 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.68 10.21 71.98 0.74 -4.95 16 2 C 0.10 4.92 5.65 86.38 0.49 5.41 16 3 N -0.43 -24.15 2.56 -764.67 -1.95 -26.10 16 4 C -0.34 -19.75 8.98 84.01 0.75 -19.00 16 5 H 0.07 4.40 7.70 -2.91 -0.02 4.38 16 6 C 0.00 0.10 4.94 84.90 0.42 0.52 16 7 N -0.89 -48.53 11.31 21.65 0.24 -48.29 16 8 Si 1.00 42.04 29.61 68.60 2.03 44.07 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 11 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 12 C 0.58 32.45 8.33 129.79 1.08 33.53 16 13 O -0.65 -39.71 15.96 19.83 0.32 -39.39 16 14 O -0.38 -17.41 9.12 -55.75 -0.51 -17.92 16 15 C 0.11 4.25 5.75 71.98 0.41 4.67 16 16 C -0.18 -4.76 6.07 -10.79 -0.07 -4.83 16 17 C -0.17 -3.53 10.18 30.60 0.31 -3.22 16 18 C -0.15 -2.98 10.25 30.60 0.31 -2.67 16 19 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 20 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 22 H 0.10 4.92 5.32 -2.39 -0.01 4.91 16 23 H 0.05 2.49 7.51 -2.39 -0.02 2.47 16 24 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 25 H 0.06 2.12 7.87 -2.38 -0.02 2.10 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.09 2.01 8.03 -2.39 -0.02 1.99 16 29 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -68.51 270.10 5.68 -62.82 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.10 Total: 15.35 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 4.45 Total: 9.46 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -1.71 Total: -74.39 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -0.19 Total: -57.32 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -68.51 5.68 -62.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379386964.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.116 kcal (2) G-P(sol) polarization free energy of solvation -68.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds