Wall clock time and date at job start Sun Mar 29 2020 22:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00148 * 2 1 4 4 C 1.52995 * 109.47393 * 180.02562 * 3 2 1 5 5 H 1.08992 * 109.47281 * 184.99617 * 4 3 2 6 6 N 1.46502 * 109.47333 * 64.99616 * 4 3 2 7 7 C 1.34771 * 120.00084 * 155.00545 * 6 4 3 8 8 O 1.21692 * 120.00234 * 359.97438 * 7 6 4 9 9 C 1.46372 * 120.00242 * 180.02562 * 7 6 4 10 10 H 1.08004 * 119.99821 * 353.93011 * 9 7 6 11 11 C 1.40043 * 120.00324 * 173.93232 * 9 7 6 12 12 N 1.30675 * 120.00012 * 6.14890 * 11 9 7 13 13 Si 1.86801 * 120.00266 * 186.14464 * 11 9 7 14 14 H 1.48495 * 109.47129 * 94.98171 * 13 11 9 15 15 H 1.48504 * 109.47464 * 214.98410 * 13 11 9 16 16 H 1.48505 * 109.46805 * 334.98408 * 13 11 9 17 17 C 1.53006 * 109.46797 * 304.99700 * 4 3 2 18 18 C 1.53000 * 117.49873 * 248.74480 * 17 4 3 19 19 C 1.52997 * 117.49667 * 180.08583 * 17 4 3 20 20 H 1.09001 * 109.47327 * 299.99966 * 1 2 3 21 21 H 1.08998 * 109.47161 * 60.00485 * 1 2 3 22 22 H 1.09006 * 109.47401 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47111 * 59.99191 * 3 2 1 24 24 H 1.09001 * 109.46387 * 299.99523 * 3 2 1 25 25 H 0.97004 * 119.99647 * 334.99520 * 6 4 3 26 26 H 0.96999 * 119.99562 * 180.02562 * 12 11 9 27 27 H 1.08994 * 115.55003 * 34.41921 * 17 4 3 28 28 H 1.09004 * 117.49862 * 0.02562 * 18 17 4 29 29 H 1.09002 * 117.49686 * 145.02014 * 18 17 4 30 30 H 1.09001 * 117.50127 * 214.97793 * 19 17 4 31 31 H 1.09001 * 117.50062 * 359.97438 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1764 0.0888 6 7 3.9757 0.5644 -1.2527 7 6 5.2195 0.7944 -1.7178 8 8 5.9768 1.5178 -1.0980 9 6 5.6592 0.1751 -2.9690 10 1 5.0249 -0.5422 -3.4686 11 6 6.9024 0.5126 -3.5184 12 7 7.7209 1.2866 -2.8562 13 14 7.3907 -0.1438 -5.1977 14 1 7.0555 0.8610 -6.2385 15 1 8.8515 -0.4105 -5.2194 16 1 6.6534 -1.4037 -5.4703 17 6 3.9789 0.3194 1.1808 18 6 4.7356 1.0098 2.3173 19 6 5.4797 0.0793 1.3563 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6885 1.8464 0.8899 24 1 1.6886 1.8462 -0.8901 25 1 3.3719 -0.0121 -1.7469 26 1 8.5819 1.5206 -3.2369 27 1 3.3045 -0.4945 1.4466 28 1 4.9170 2.0806 2.2236 29 1 4.5592 0.6498 3.3309 30 1 5.7927 -0.8925 1.7382 31 1 6.1511 0.5373 0.6300 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379387636.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:34 Heat of formation + Delta-G solvation = -63.835527 kcal Electronic energy + Delta-G solvation = -14545.298185 eV Core-core repulsion = 12020.665387 eV Total energy + Delta-G solvation = -2524.632798 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.64071 -37.03244 -35.72390 -32.87620 -32.18083 -29.06649 -26.44002 -25.64540 -22.91007 -21.54373 -20.32312 -19.06996 -17.18032 -16.13326 -15.68164 -15.46993 -14.99801 -14.70210 -13.88689 -13.72960 -13.36602 -12.35994 -12.15419 -11.91299 -11.43786 -11.22073 -11.06027 -11.00140 -10.67916 -10.52693 -10.37613 -10.17759 -9.55652 -9.47524 -9.33155 -8.80501 -7.54749 -7.32346 -6.15083 -4.57958 3.16447 3.23964 3.27624 3.97986 4.14401 4.48216 4.63756 5.05538 5.18631 5.33378 5.40093 5.52740 5.67717 5.69811 5.74393 5.86247 5.92887 6.06066 6.16635 6.26697 6.53296 6.72448 6.87810 7.34795 7.38159 7.49033 8.03756 8.20925 8.41431 9.07851 9.64044 10.64657 10.84462 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034076 B = 0.008929 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.490688 B = 3135.062350 C = 3723.888875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.059 3.941 4 C 0.188 3.812 5 H 0.087 0.913 6 N -0.755 5.755 7 C 0.560 3.440 8 O -0.579 6.579 9 C -0.545 4.545 10 H 0.066 0.934 11 C 0.089 3.911 12 N -0.768 5.768 13 Si 0.905 3.095 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.265 1.265 17 C -0.157 4.157 18 C -0.188 4.188 19 C -0.176 4.176 20 H 0.036 0.964 21 H 0.038 0.962 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.384 0.616 26 H 0.267 0.733 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.422 -1.357 4.458 11.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.018 4.018 4 C 0.081 3.919 5 H 0.104 0.896 6 N -0.408 5.408 7 C 0.364 3.636 8 O -0.463 6.463 9 C -0.582 4.582 10 H 0.085 0.915 11 C -0.130 4.130 12 N -0.397 5.397 13 Si 0.730 3.270 14 H -0.199 1.199 15 H -0.205 1.205 16 H -0.189 1.189 17 C -0.177 4.177 18 C -0.226 4.226 19 C -0.213 4.213 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.100 0.900 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.215 0.785 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.570 -0.888 4.913 10.794 hybrid contribution -0.361 -0.445 -0.977 1.133 sum -9.931 -1.333 3.937 10.766 Atomic orbital electron populations 1.22693 0.81996 1.02289 0.99549 1.87940 1.18767 1.28123 1.95267 1.22876 0.94425 0.84529 0.99942 1.20166 0.89442 0.96895 0.85366 0.89557 1.46108 1.17053 1.54185 1.23490 1.18145 0.78960 0.80961 0.85532 1.90506 1.53478 1.41968 1.60347 1.20899 1.03171 1.26682 1.07450 0.91526 1.25676 0.95681 0.93681 0.98010 1.70023 1.06753 1.27378 1.35509 0.86406 0.78076 0.79787 0.82757 1.19910 1.20517 1.18929 1.22615 0.95664 1.02123 0.97277 1.22884 1.06825 0.98788 0.94105 1.23375 0.95637 0.99537 1.02738 0.94546 0.94355 0.90021 0.92954 0.92993 0.78460 0.92236 0.88359 0.89378 0.90240 0.90733 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.91 9.46 -35.23 -0.33 -6.24 16 3 C 0.06 0.92 5.68 37.16 0.21 1.14 16 4 C 0.19 3.71 2.67 -67.93 -0.18 3.53 16 5 H 0.09 1.87 7.33 -51.93 -0.38 1.49 16 6 N -0.75 -17.26 5.04 -55.22 -0.28 -17.54 16 7 C 0.56 15.69 7.07 -12.99 -0.09 15.60 16 8 O -0.58 -17.92 12.07 5.20 0.06 -17.85 16 9 C -0.54 -15.47 9.53 -35.63 -0.34 -15.81 16 10 H 0.07 1.77 7.85 -52.48 -0.41 1.35 16 11 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 12 N -0.77 -22.87 11.85 55.55 0.66 -22.21 16 13 Si 0.90 20.32 29.56 -169.99 -5.03 15.29 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 C -0.16 -3.01 5.22 -90.62 -0.47 -3.48 16 18 C -0.19 -3.35 10.18 -26.69 -0.27 -3.62 16 19 C -0.18 -3.72 9.74 -26.70 -0.26 -3.98 16 20 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 21 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.38 8.19 8.36 -40.82 -0.34 7.85 16 26 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 27 H 0.10 1.82 7.39 -51.93 -0.38 1.43 16 28 H 0.09 1.57 8.05 -51.93 -0.42 1.16 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.13 3.48 5.02 -51.93 -0.26 3.22 16 LS Contribution 265.20 15.07 4.00 4.00 Total: -1.00 -32.35 265.20 -5.60 -37.95 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.29 Total: 9.38 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.39 Total: -2.77 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.38 Total: -39.75 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.27 Total: -24.09 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.35 -5.60 -37.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379387636.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.887 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds